Wall clock time and date at job start Tue Mar 31 2020 05:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86806 * 120.00095 * 2 1 4 4 H 1.48501 * 109.46896 * 269.99572 * 3 2 1 5 5 H 1.48493 * 109.47203 * 29.99881 * 3 2 1 6 6 H 1.48504 * 109.46938 * 149.99867 * 3 2 1 7 7 C 1.40031 * 120.00076 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99936 * 197.23432 * 7 2 1 9 9 C 1.41555 * 119.99852 * 17.23723 * 7 2 1 10 10 C 1.41179 * 120.99096 * 203.19924 * 9 7 2 11 11 C 1.36566 * 119.14547 * 179.97438 * 10 9 7 12 12 N 1.32100 * 121.26288 * 359.74005 * 11 10 9 13 13 C 1.32535 * 122.21871 * 0.53691 * 12 11 10 14 14 N 1.39076 * 119.65333 * 179.74587 * 13 12 11 15 15 C 1.46827 * 111.00009 * 235.03691 * 14 13 12 16 16 C 1.53295 * 109.40174 * 189.75702 * 15 14 13 17 17 C 1.51433 * 108.24295 * 306.20650 * 16 15 14 18 18 O 1.20763 * 121.11228 * 229.30494 * 17 16 15 19 19 C 1.51432 * 117.77947 * 49.02418 * 17 16 15 20 20 F 1.39905 * 109.70738 * 70.66195 * 19 17 16 21 21 F 1.39894 * 109.71523 * 191.24644 * 19 17 16 22 22 C 1.46829 * 111.00696 * 359.72260 * 14 13 12 23 23 C 1.38745 * 120.68355 * 359.46647 * 13 12 11 24 24 H 0.96998 * 119.99615 * 0.02562 * 1 2 3 25 25 H 1.07994 * 120.42920 * 359.95615 * 10 9 7 26 26 H 1.07995 * 119.36682 * 180.02562 * 11 10 9 27 27 H 1.09003 * 109.48216 * 309.73440 * 15 14 13 28 28 H 1.09001 * 109.48504 * 69.76108 * 15 14 13 29 29 H 1.09000 * 109.71219 * 186.51641 * 16 15 14 30 30 H 1.09003 * 109.71001 * 65.89218 * 16 15 14 31 31 H 1.09006 * 109.47629 * 50.26616 * 22 14 13 32 32 H 1.08997 * 109.49526 * 290.23528 * 22 14 13 33 33 H 1.07999 * 120.66102 * 180.23774 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6178 0.0000 4 1 2.4891 2.0464 -1.4001 5 1 1.4390 2.6527 0.7000 6 1 3.5390 1.4401 0.7001 7 6 2.0076 -1.2127 0.0005 8 1 3.0512 -1.2335 0.2777 9 6 1.3475 -2.4112 -0.3622 10 6 1.8279 -3.6658 0.0720 11 6 1.1613 -4.7982 -0.2999 12 7 0.0765 -4.7396 -1.0515 13 6 -0.4166 -3.5910 -1.4922 14 7 -1.5594 -3.5918 -2.2849 15 6 -1.3218 -2.8876 -3.5512 16 6 -2.6540 -2.6964 -4.2852 17 6 -3.3215 -4.0493 -4.4162 18 8 -3.7535 -4.4319 -5.4771 19 6 -3.4235 -4.9093 -3.1739 20 9 -4.3520 -4.3511 -2.2887 21 9 -3.8260 -6.2019 -3.5265 22 6 -2.0425 -4.9598 -2.5106 23 6 0.1921 -2.3876 -1.1662 24 1 -0.4849 0.8401 -0.0004 25 1 2.7113 -3.7292 0.6899 26 1 1.5254 -5.7597 0.0305 27 1 -0.8759 -1.9140 -3.3476 28 1 -0.6453 -3.4747 -4.1723 29 1 -2.4715 -2.2790 -5.2754 30 1 -3.2948 -2.0240 -3.7147 31 1 -2.1163 -5.4813 -1.5562 32 1 -1.3459 -5.4889 -3.1609 33 1 -0.2122 -1.4516 -1.5224 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166973284.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:04 Heat of formation + Delta-G solvation = -89.850910 kcal Electronic energy + Delta-G solvation = -22201.046684 eV Core-core repulsion = 18476.729542 eV Total energy + Delta-G solvation = -3724.317142 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.092 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.97831 -47.02179 -40.00165 -38.98228 -36.80909 -34.22667 -31.85502 -30.75574 -30.39298 -27.91632 -26.15265 -23.88869 -23.62727 -21.56758 -20.84236 -19.65945 -18.07655 -17.22357 -17.19820 -16.82050 -15.75010 -15.60623 -15.26247 -15.06551 -14.39032 -14.34117 -13.87961 -13.85201 -13.73535 -13.44709 -13.32044 -13.09236 -12.78453 -12.38891 -12.21111 -11.96865 -11.74205 -11.50690 -11.34088 -11.11700 -10.90924 -10.36847 -10.17923 -9.69370 -9.57129 -9.16943 -8.24966 -8.13299 -7.18303 -6.95271 -4.73045 1.35354 2.54645 2.69124 2.95831 2.98701 3.05286 3.11346 3.62314 3.76066 4.07629 4.33886 4.46607 4.53019 4.68912 4.96658 5.19452 5.37682 5.47687 5.49601 5.63464 5.85376 5.90934 5.95485 6.38199 6.63647 6.68180 6.84703 6.89793 7.01768 7.14833 7.35057 7.44490 7.75563 8.06016 8.38767 8.60854 8.62664 9.37826 9.94315 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.023434 B = 0.005193 C = 0.004576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.552379 B = 5390.499229 C = 6117.979817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.775 5.775 2 C 0.078 3.922 3 Si 0.911 3.089 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.451 4.451 8 H 0.083 0.917 9 C 0.137 3.863 10 C -0.280 4.280 11 C 0.120 3.880 12 N -0.608 5.608 13 C 0.287 3.713 14 N -0.469 5.469 15 C 0.059 3.941 16 C -0.156 4.156 17 C 0.336 3.664 18 O -0.416 6.416 19 C 0.251 3.749 20 F -0.171 7.171 21 F -0.183 7.183 22 C 0.039 3.961 23 C -0.217 4.217 24 H 0.285 0.715 25 H 0.102 0.898 26 H 0.122 0.878 27 H 0.110 0.890 28 H 0.049 0.951 29 H 0.109 0.891 30 H 0.122 0.878 31 H 0.122 0.878 32 H 0.075 0.925 33 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.660 -1.263 -5.538 6.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.399 5.399 2 C -0.143 4.143 3 Si 0.735 3.265 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.184 1.184 7 C -0.481 4.481 8 H 0.101 0.899 9 C 0.129 3.871 10 C -0.304 4.304 11 C -0.033 4.033 12 N -0.328 5.328 13 C 0.063 3.937 14 N -0.187 5.187 15 C -0.068 4.068 16 C -0.194 4.194 17 C 0.206 3.794 18 O -0.285 6.285 19 C 0.213 3.787 20 F -0.152 7.152 21 F -0.164 7.164 22 C -0.090 4.090 23 C -0.242 4.242 24 H 0.096 0.904 25 H 0.120 0.880 26 H 0.139 0.861 27 H 0.128 0.872 28 H 0.067 0.933 29 H 0.127 0.873 30 H 0.140 0.860 31 H 0.140 0.860 32 H 0.093 0.907 33 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -3.970 -1.873 -6.103 7.518 hybrid contribution 1.083 1.010 0.222 1.498 sum -2.887 -0.863 -5.881 6.608 Atomic orbital electron populations 1.69785 1.07640 1.29784 1.32738 1.26000 0.94791 1.01601 0.91948 0.86249 0.80546 0.80151 0.79522 1.19068 1.20079 1.18443 1.19642 0.98102 0.90769 1.39627 0.89879 1.17689 0.90184 0.92290 0.86937 1.21592 1.05316 0.93888 1.09569 1.21324 0.90827 0.96906 0.94217 1.67094 1.16596 1.27822 1.21337 1.19104 0.88478 0.90754 0.95383 1.58998 1.29983 1.14499 1.15268 1.22339 0.94449 1.01614 0.88417 1.22449 0.98415 0.94505 1.04037 1.25839 0.75694 0.89578 0.88260 1.90449 1.36187 1.72031 1.29813 1.21867 0.89793 0.77980 0.89055 1.93081 1.67698 1.85014 1.69426 1.93041 1.91921 1.39052 1.92392 1.22786 0.90011 0.92347 1.03883 1.21620 1.00949 0.95951 1.05717 0.90374 0.88025 0.86075 0.87178 0.93288 0.87302 0.86032 0.86034 0.90652 0.84960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.24 10.91 55.55 0.61 -17.63 16 2 C 0.08 1.77 5.20 -17.34 -0.09 1.67 16 3 Si 0.91 16.95 29.59 -169.99 -5.03 11.92 16 4 H -0.27 -4.87 7.11 56.52 0.40 -4.47 16 5 H -0.28 -5.06 7.11 56.52 0.40 -4.66 16 6 H -0.26 -4.83 7.11 56.52 0.40 -4.43 16 7 C -0.45 -10.91 9.12 -37.65 -0.34 -11.25 16 8 H 0.08 1.93 7.90 -52.49 -0.41 1.52 16 9 C 0.14 3.37 5.61 -106.56 -0.60 2.78 16 10 C -0.28 -6.35 9.85 -39.07 -0.38 -6.73 16 11 C 0.12 2.57 11.10 -18.04 -0.20 2.37 16 12 N -0.61 -13.38 8.58 -12.82 -0.11 -13.49 16 13 C 0.29 6.26 6.41 -154.98 -0.99 5.27 16 14 N -0.47 -8.57 4.59 -173.01 -0.79 -9.36 16 15 C 0.06 0.87 5.32 -3.71 -0.02 0.85 16 16 C -0.16 -1.92 6.35 -27.37 -0.17 -2.09 16 17 C 0.34 4.94 6.48 -28.31 -0.18 4.75 16 18 O -0.42 -6.85 17.52 6.00 0.11 -6.75 16 19 C 0.25 3.99 2.29 -27.37 -0.06 3.93 16 20 F -0.17 -2.87 17.07 2.25 0.04 -2.83 16 21 F -0.18 -3.02 16.79 2.25 0.04 -2.98 16 22 C 0.04 0.65 4.26 -3.71 -0.02 0.64 16 23 C -0.22 -5.12 7.83 -38.43 -0.30 -5.43 16 24 H 0.29 6.08 8.29 -40.82 -0.34 5.74 16 25 H 0.10 2.13 8.06 -52.49 -0.42 1.71 16 26 H 0.12 2.21 8.06 -52.49 -0.42 1.78 16 27 H 0.11 1.68 6.53 -51.93 -0.34 1.34 16 28 H 0.05 0.70 8.10 -51.93 -0.42 0.28 16 29 H 0.11 1.08 8.14 -51.93 -0.42 0.65 16 30 H 0.12 1.39 8.14 -51.93 -0.42 0.97 16 31 H 0.12 2.20 7.52 -51.93 -0.39 1.81 16 32 H 0.08 1.23 8.10 -51.93 -0.42 0.81 16 33 H 0.13 3.15 5.23 -52.49 -0.27 2.87 16 LS Contribution 290.27 15.07 4.37 4.37 Total: -1.00 -26.83 290.27 -7.23 -34.05 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -3.09 Total: 5.93 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: -3.37 Total: -3.24 kcal Atomic # 7 Polarization: -40.18 SS G_CDS: -0.30 Total: -40.48 kcal Atomic # 8 Polarization: -6.85 SS G_CDS: 0.11 Total: -6.75 kcal Atomic # 9 Polarization: -5.88 SS G_CDS: 0.08 Total: -5.80 kcal Atomic # 14 Polarization: 16.95 SS G_CDS: -5.03 Total: 11.92 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -26.83 -7.23 -34.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166973284.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.796 kcal (2) G-P(sol) polarization free energy of solvation -26.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds