Wall clock time and date at job start Tue Mar 31 2020 05:42:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.48529 * 110.99966 * 2 1 4 4 C 1.54944 * 103.22755 * 200.28300 * 3 2 1 5 5 C 1.54595 * 102.91946 * 37.41039 * 4 3 2 6 6 H 1.08997 * 110.39612 * 219.08295 * 5 4 3 7 7 N 1.46507 * 110.30642 * 96.96542 * 5 4 3 8 8 C 1.38529 * 120.00316 * 157.83305 * 7 5 4 9 9 C 1.40042 * 120.44757 * 359.97438 * 8 7 5 10 10 C 1.38799 * 118.59397 * 180.02562 * 9 8 7 11 11 Cl 1.73599 * 120.34066 * 179.97438 * 10 9 8 12 12 N 1.32204 * 119.32625 * 0.02562 * 10 9 8 13 13 C 1.33429 * 120.86041 * 0.02562 * 12 10 9 14 14 C 1.41576 * 119.24008 * 179.97438 * 13 12 10 15 15 H 1.07996 * 119.99902 * 179.97438 * 14 13 12 16 16 C 1.40057 * 119.99541 * 0.02562 * 14 13 12 17 17 N 1.30694 * 120.00200 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 119.99721 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47383 * 59.99377 * 18 16 14 20 20 H 1.48500 * 109.47512 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47302 * 299.99935 * 18 16 14 22 22 N 1.32567 * 120.45115 * 180.02562 * 8 7 5 23 23 C 1.47906 * 110.99434 * 242.60342 * 2 1 3 24 24 H 1.09004 * 109.47113 * 177.39545 * 1 2 3 25 25 H 1.09000 * 109.46752 * 297.39358 * 1 2 3 26 26 H 1.08999 * 109.47235 * 57.39612 * 1 2 3 27 27 H 1.08999 * 110.66877 * 318.71159 * 3 2 1 28 28 H 1.08993 * 110.66973 * 81.68172 * 3 2 1 29 29 H 1.09001 * 110.72014 * 279.06097 * 4 3 2 30 30 H 1.08994 * 110.72609 * 155.77345 * 4 3 2 31 31 H 0.96998 * 119.99812 * 337.82155 * 7 5 4 32 32 H 1.07998 * 120.70525 * 0.02562 * 9 8 7 33 33 H 0.97004 * 119.99471 * 180.02562 * 17 16 14 34 34 H 1.08996 * 109.92157 * 26.49340 * 23 2 1 35 35 H 1.08997 * 110.08392 * 265.28533 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3866 0.0000 4 6 3.4492 1.2106 -0.5229 5 6 3.2982 0.1053 -1.5931 6 1 4.1466 -0.5779 -1.5559 7 7 3.1845 0.7010 -2.9268 8 6 3.4969 -0.0484 -4.0491 9 6 3.9229 -1.3762 -3.9199 10 6 4.2264 -2.0915 -5.0700 11 17 4.7593 -3.7401 -4.9624 12 7 4.1065 -1.5041 -6.2483 13 6 3.6993 -0.2370 -6.3432 14 6 3.5836 0.3582 -7.6225 15 1 3.2547 1.3829 -7.7136 16 6 3.8945 -0.3821 -8.7700 17 7 4.2920 -1.6223 -8.6598 18 14 3.7425 0.4034 -10.4579 19 1 4.6409 1.5832 -10.5377 20 1 4.1275 -0.5826 -11.4994 21 1 2.3387 0.8346 -10.6787 22 7 3.3976 0.4818 -5.2601 23 6 1.9989 -0.6354 -1.2260 24 1 -0.3633 -1.0266 -0.0467 25 1 -0.3633 0.4728 0.9124 26 1 -0.3634 0.5537 -0.8657 27 1 1.4238 2.0204 -0.6729 28 1 2.0014 1.7987 1.0090 29 1 4.1115 0.8835 0.2786 30 1 3.8123 2.1351 -0.9717 31 1 2.8902 1.6202 -3.0238 32 1 4.0134 -1.8340 -2.9459 33 1 4.5077 -2.1349 -9.4546 34 1 1.2757 -0.5403 -2.0359 35 1 2.2116 -1.6881 -1.0400 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167270048.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:26 Heat of formation + Delta-G solvation = 52.684824 kcal Electronic energy + Delta-G solvation = -19647.011541 eV Core-core repulsion = 16512.964644 eV Total energy + Delta-G solvation = -3134.046898 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.094 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.55723 -38.59792 -35.64702 -35.13525 -33.48912 -31.77680 -30.80338 -29.20795 -28.07332 -26.38782 -25.34483 -22.19775 -22.00231 -21.14934 -20.29629 -18.10792 -16.62858 -16.43122 -15.61104 -15.49296 -14.78561 -14.45802 -14.23653 -13.79733 -13.55972 -13.46524 -13.13243 -12.86005 -12.70045 -11.87674 -11.57273 -11.52699 -11.48732 -11.38191 -11.23904 -11.09295 -10.85639 -10.83145 -10.42380 -10.20788 -10.00236 -9.14737 -9.03295 -8.55459 -8.27299 -7.50623 -7.19179 -6.58341 -4.82023 2.51626 2.95388 2.96662 3.04320 3.06974 3.12962 3.69223 3.87060 4.11157 4.57337 4.57663 4.69956 5.04593 5.23263 5.34750 5.40028 5.48638 5.61357 5.76058 5.79029 5.83701 5.92303 6.00977 6.06331 6.08406 6.38218 6.41882 6.70592 6.82760 6.90994 6.94501 7.12832 7.69592 8.08782 8.17199 8.50805 8.57476 9.03399 10.07315 10.21972 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.020141 B = 0.004713 C = 0.004086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.841910 B = 5939.674322 C = 6851.167205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.522 5.522 3 C 0.033 3.967 4 C -0.129 4.129 5 C 0.152 3.848 6 H 0.092 0.908 7 N -0.723 5.723 8 C 0.455 3.545 9 C -0.405 4.405 10 C 0.269 3.731 11 Cl -0.082 7.082 12 N -0.527 5.527 13 C 0.434 3.566 14 C -0.394 4.394 15 H 0.095 0.905 16 C 0.065 3.935 17 N -0.701 5.701 18 Si 0.920 3.080 19 H -0.263 1.263 20 H -0.276 1.276 21 H -0.263 1.263 22 N -0.642 5.642 23 C 0.019 3.981 24 H 0.068 0.932 25 H 0.066 0.934 26 H 0.028 0.972 27 H 0.045 0.955 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.395 0.605 32 H 0.112 0.888 33 H 0.278 0.722 34 H 0.055 0.945 35 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.994 2.635 11.427 12.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.246 5.246 3 C -0.095 4.095 4 C -0.168 4.168 5 C 0.045 3.955 6 H 0.110 0.890 7 N -0.360 5.360 8 C 0.208 3.792 9 C -0.438 4.438 10 C 0.088 3.912 11 Cl -0.054 7.054 12 N -0.249 5.249 13 C 0.199 3.801 14 C -0.430 4.430 15 H 0.113 0.887 16 C -0.163 4.163 17 N -0.322 5.322 18 Si 0.743 3.257 19 H -0.187 1.187 20 H -0.201 1.201 21 H -0.187 1.187 22 N -0.372 5.372 23 C -0.111 4.111 24 H 0.086 0.914 25 H 0.085 0.915 26 H 0.047 0.953 27 H 0.063 0.937 28 H 0.099 0.901 29 H 0.105 0.895 30 H 0.098 0.902 31 H 0.231 0.769 32 H 0.130 0.870 33 H 0.089 0.911 34 H 0.074 0.926 35 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.765 2.297 10.905 11.482 hybrid contribution -0.400 0.334 -0.605 0.799 sum -3.165 2.632 10.299 11.091 Atomic orbital electron populations 1.22501 0.88063 1.02059 1.00652 1.64787 1.08055 1.14690 1.37087 1.23263 0.95086 0.90250 1.00924 1.22785 0.96819 0.99004 0.98191 1.21562 0.97302 0.94880 0.81782 0.89029 1.44227 1.75130 1.14693 1.01923 1.18141 0.87130 0.87133 0.86760 1.20929 1.28449 0.96569 0.97837 1.21446 0.92674 0.85866 0.91189 1.98296 1.88785 1.20267 1.98073 1.68599 1.22150 1.11887 1.22232 1.19460 0.86561 0.83226 0.90894 1.19317 1.36994 0.99328 0.87315 0.88698 1.26125 0.93767 0.94723 1.01659 1.70141 1.23779 1.07199 1.31096 0.86181 0.79975 0.79708 0.79799 1.18720 1.20054 1.18743 1.68229 1.32497 1.39450 0.97005 1.23530 0.96927 0.99701 0.90913 0.91358 0.91499 0.95335 0.93688 0.90061 0.89532 0.90158 0.76938 0.87035 0.91088 0.92622 0.89813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.40 60.07 0.56 0.73 16 2 N -0.52 -6.26 5.55 -238.71 -1.33 -7.58 16 3 C 0.03 0.34 6.56 -1.90 -0.01 0.33 16 4 C -0.13 -1.40 6.68 -24.87 -0.17 -1.57 16 5 C 0.15 2.12 2.97 -66.57 -0.20 1.92 16 6 H 0.09 1.34 6.59 -51.93 -0.34 0.99 16 7 N -0.72 -12.47 5.14 -52.45 -0.27 -12.74 16 8 C 0.46 10.20 7.70 -154.99 -1.19 9.01 16 9 C -0.40 -9.07 9.12 -38.70 -0.35 -9.42 16 10 C 0.27 6.66 7.33 -17.18 -0.13 6.54 16 11 Cl -0.08 -1.74 29.15 -51.86 -1.51 -3.26 16 12 N -0.53 -14.67 7.86 -9.83 -0.08 -14.74 16 13 C 0.43 12.14 7.37 -158.34 -1.17 10.97 16 14 C -0.39 -10.60 9.37 -37.63 -0.35 -10.95 16 15 H 0.09 2.43 7.85 -52.49 -0.41 2.02 16 16 C 0.07 1.63 5.50 -17.35 -0.10 1.54 16 17 N -0.70 -18.39 11.42 55.55 0.63 -17.75 16 18 Si 0.92 18.25 29.56 -169.99 -5.02 13.23 16 19 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 20 H -0.28 -5.30 7.11 56.52 0.40 -4.90 16 21 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 22 N -0.64 -16.58 10.39 -11.89 -0.12 -16.71 16 23 C 0.02 0.26 6.50 -2.75 -0.02 0.24 16 24 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 25 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.03 0.31 8.00 -51.93 -0.42 -0.10 16 27 H 0.04 0.48 7.96 -51.93 -0.41 0.07 16 28 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.08 0.83 7.96 -51.93 -0.41 0.42 16 31 H 0.40 6.45 8.66 -40.82 -0.35 6.10 16 32 H 0.11 2.20 6.38 -52.49 -0.33 1.87 16 33 H 0.28 6.59 8.29 -40.82 -0.34 6.25 16 34 H 0.06 0.87 7.51 -51.93 -0.39 0.48 16 35 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 LS Contribution 308.82 15.07 4.65 4.65 Total: -1.00 -29.45 308.82 -10.48 -39.93 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -4.32 Total: 5.62 kcal Atomic # 6 Polarization: 12.46 SS G_CDS: -3.12 Total: 9.34 kcal Atomic # 7 Polarization: -68.36 SS G_CDS: -1.16 Total: -69.52 kcal Atomic # 14 Polarization: 18.25 SS G_CDS: -5.02 Total: 13.23 kcal Atomic # 17 Polarization: -1.74 SS G_CDS: -1.51 Total: -3.26 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -29.45 -10.48 -39.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167270048.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.616 kcal (2) G-P(sol) polarization free energy of solvation -29.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds