Wall clock time and date at job start Tue Mar 31 2020 05:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.32279 * 120.66916 * 2 1 4 4 C 1.32248 * 119.57916 * 180.25003 * 3 2 1 5 5 Cl 1.73601 * 119.49105 * 179.75362 * 4 3 2 6 6 N 1.31970 * 121.02785 * 359.77772 * 4 3 2 7 7 N 1.28747 * 121.44525 * 359.97438 * 6 4 3 8 8 C 1.32730 * 120.31396 * 0.02562 * 7 6 4 9 9 N 1.39128 * 120.51079 * 179.97438 * 8 7 6 10 10 C 1.46493 * 119.99788 * 0.02562 * 9 8 7 11 11 H 1.09003 * 109.41639 * 35.13937 * 10 9 8 12 12 C 1.52963 * 109.41468 * 155.00110 * 10 9 8 13 13 C 1.53227 * 109.40733 * 183.63462 * 12 10 9 14 14 C 1.51269 * 108.53442 * 305.37116 * 13 12 10 15 15 C 1.37878 * 120.84795 * 231.32244 * 14 13 12 16 16 N 1.31516 * 120.00070 * 190.01123 * 15 14 13 17 17 Si 1.86802 * 120.00130 * 10.01424 * 15 14 13 18 18 H 1.48498 * 109.46961 * 179.97438 * 17 15 14 19 19 H 1.48501 * 109.46877 * 60.00007 * 17 15 14 20 20 H 1.48496 * 109.46825 * 299.99886 * 17 15 14 21 21 C 1.51265 * 118.30126 * 51.60093 * 14 13 12 22 22 C 1.52963 * 109.35905 * 275.31684 * 10 9 8 23 23 H 1.08990 * 109.47312 * 270.21701 * 1 2 3 24 24 H 1.08997 * 109.47445 * 30.22707 * 1 2 3 25 25 H 1.09007 * 109.46463 * 150.21768 * 1 2 3 26 26 H 0.97004 * 119.99917 * 180.02562 * 9 8 7 27 27 H 1.09000 * 109.48353 * 63.64959 * 12 10 9 28 28 H 1.09004 * 109.49099 * 303.62223 * 12 10 9 29 29 H 1.09000 * 109.62687 * 185.65389 * 13 12 10 30 30 H 1.09004 * 109.62641 * 65.08365 * 13 12 10 31 31 H 0.97003 * 119.99606 * 5.66673 * 16 15 14 32 32 H 1.09000 * 109.62661 * 68.11553 * 21 14 13 33 33 H 1.09004 * 109.62903 * 188.68873 * 21 14 13 34 34 H 1.09000 * 109.47638 * 296.31480 * 22 10 9 35 35 H 1.09000 * 109.47707 * 56.33531 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1818 1.1378 0.0000 4 6 3.5040 1.1126 -0.0050 5 17 4.3872 2.6072 -0.0115 6 7 4.1626 -0.0310 -0.0056 7 7 3.5460 -1.1612 -0.0009 8 6 2.2193 -1.2005 0.0042 9 7 1.5487 -2.4195 0.0088 10 6 2.3074 -3.6727 0.0085 11 1 3.2162 -3.5463 0.5969 12 6 1.4543 -4.7836 0.6232 13 6 2.2792 -6.0723 0.7061 14 6 2.8161 -6.3890 -0.6722 15 6 2.6412 -7.6380 -1.2292 16 7 3.2773 -7.9602 -2.3343 17 14 1.5006 -8.8728 -0.4144 18 1 1.4864 -10.1299 -1.2046 19 1 0.1269 -8.3119 -0.3527 20 1 1.9813 -9.1577 0.9614 21 6 3.5554 -5.3023 -1.4210 22 6 2.6794 -4.0399 -1.4290 23 1 -0.3633 0.0039 1.0275 24 1 -0.3634 0.8879 -0.5173 25 1 -0.3632 -0.8920 -0.5105 26 1 0.5789 -2.4396 0.0122 27 1 0.5757 -4.9538 0.0009 28 1 1.1392 -4.4886 1.6241 29 1 1.6463 -6.8906 1.0495 30 1 3.1089 -5.9319 1.3989 31 1 3.9313 -7.3516 -2.7124 32 1 4.5012 -5.0920 -0.9215 33 1 3.7429 -5.6257 -2.4449 34 1 1.7718 -4.2276 -2.0027 35 1 3.2326 -3.2175 -1.8826 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167845066.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:02 Heat of formation + Delta-G solvation = 51.357998 kcal Electronic energy + Delta-G solvation = -19814.458284 eV Core-core repulsion = 16680.353851 eV Total energy + Delta-G solvation = -3134.104433 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.094 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.85219 -38.09803 -37.00653 -35.62393 -35.13949 -32.59630 -30.77449 -29.80204 -29.31521 -27.07965 -24.33344 -23.74123 -22.28344 -21.31443 -20.03425 -18.71707 -17.71284 -17.18165 -16.50084 -16.17188 -15.33821 -14.06301 -13.94508 -13.82916 -13.68207 -13.34951 -13.01727 -12.82896 -12.50067 -12.39638 -11.96440 -11.87897 -11.72239 -11.57158 -11.27273 -11.22502 -10.93847 -10.69630 -10.40754 -10.24639 -10.14425 -9.69319 -9.43804 -9.28013 -8.61060 -8.38381 -7.98948 -6.50799 -4.10105 0.40969 0.78693 1.29934 2.93969 3.34663 3.35046 3.35557 3.52244 3.55846 3.98437 4.25100 4.41603 4.76434 5.01791 5.13874 5.15569 5.27283 5.42794 5.63563 5.67197 5.95421 6.26436 6.34057 6.44806 6.55483 6.61191 6.69829 6.80096 6.87998 7.11297 7.22502 7.25343 7.36843 7.55785 7.96352 8.25552 8.44155 8.78281 9.52446 10.86374 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.034238 B = 0.003916 C = 0.003671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.602441 B = 7148.076436 C = 7624.570914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.112 3.888 3 N -0.434 5.434 4 C 0.223 3.777 5 Cl 0.023 6.977 6 N -0.214 5.214 7 N -0.235 5.235 8 C 0.303 3.697 9 N -0.684 5.684 10 C 0.157 3.843 11 H 0.084 0.916 12 C -0.116 4.116 13 C 0.000 4.000 14 C -0.573 4.573 15 C 0.038 3.962 16 N -0.902 5.902 17 Si 1.058 2.942 18 H -0.287 1.287 19 H -0.285 1.285 20 H -0.286 1.286 21 C 0.007 3.993 22 C -0.111 4.111 23 H 0.092 0.908 24 H 0.092 0.908 25 H 0.083 0.917 26 H 0.408 0.592 27 H 0.058 0.942 28 H 0.039 0.961 29 H 0.030 0.970 30 H 0.017 0.983 31 H 0.273 0.727 32 H 0.010 0.990 33 H 0.037 0.963 34 H 0.050 0.950 35 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.510 15.407 5.288 17.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.055 4.055 3 N -0.155 5.155 4 C -0.075 4.075 5 Cl 0.051 6.949 6 N -0.063 5.063 7 N -0.095 5.095 8 C 0.055 3.945 9 N -0.315 5.315 10 C 0.055 3.945 11 H 0.103 0.897 12 C -0.155 4.155 13 C -0.038 4.038 14 C -0.592 4.592 15 C -0.168 4.168 16 N -0.536 5.536 17 Si 0.887 3.113 18 H -0.213 1.213 19 H -0.212 1.212 20 H -0.212 1.212 21 C -0.032 4.032 22 C -0.150 4.150 23 H 0.110 0.890 24 H 0.110 0.890 25 H 0.102 0.898 26 H 0.246 0.754 27 H 0.076 0.924 28 H 0.057 0.943 29 H 0.048 0.952 30 H 0.036 0.964 31 H 0.085 0.915 32 H 0.028 0.972 33 H 0.055 0.945 34 H 0.068 0.932 35 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -5.869 13.890 5.091 15.915 hybrid contribution -0.454 1.829 0.121 1.889 sum -6.323 15.719 5.213 17.727 Atomic orbital electron populations 1.20738 0.86333 1.04665 1.04236 1.22101 0.98575 0.86600 0.98272 1.68052 1.07567 1.29853 1.10042 1.24145 0.87726 0.90479 1.05126 1.98408 1.72974 1.26845 1.96718 1.73414 1.31426 0.93814 1.07685 1.74029 1.04759 1.15046 1.15633 1.20737 0.92734 0.88842 0.92194 1.45361 1.08775 1.02224 1.75106 1.21249 0.94745 0.79898 0.98652 0.89749 1.21935 0.99035 0.96848 0.97641 1.19506 0.94754 0.91855 0.97723 1.21006 1.38562 0.98164 1.01442 1.25744 0.98442 0.97123 0.95526 1.70794 1.23888 1.39092 1.19869 0.83677 0.76011 0.76211 0.75407 1.21284 1.21175 1.21218 1.19448 0.94145 0.91849 0.97718 1.22014 1.00227 0.98834 0.93974 0.88987 0.88967 0.89828 0.75357 0.92367 0.94262 0.95150 0.96429 0.91485 0.97164 0.94471 0.93157 0.94706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.79 9.81 36.01 0.35 -0.44 16 2 C 0.11 1.41 6.85 -81.89 -0.56 0.85 16 3 N -0.43 -6.08 10.45 -7.58 -0.08 -6.16 16 4 C 0.22 3.37 8.25 -91.61 -0.76 2.61 16 5 Cl 0.02 0.29 29.28 -51.86 -1.52 -1.23 16 6 N -0.21 -3.67 11.53 31.68 0.37 -3.31 16 7 N -0.23 -4.15 10.55 31.31 0.33 -3.82 16 8 C 0.30 4.52 7.53 -154.44 -1.16 3.35 16 9 N -0.68 -9.53 5.14 -53.73 -0.28 -9.81 16 10 C 0.16 2.78 2.38 -67.97 -0.16 2.62 16 11 H 0.08 1.65 7.58 -51.93 -0.39 1.26 16 12 C -0.12 -2.06 5.40 -26.63 -0.14 -2.21 16 13 C 0.00 0.00 5.65 -27.49 -0.16 -0.16 16 14 C -0.57 -14.37 5.48 -98.92 -0.54 -14.91 16 15 C 0.04 1.00 5.45 -17.82 -0.10 0.90 16 16 N -0.90 -25.92 13.57 55.43 0.75 -25.17 16 17 Si 1.06 23.70 27.20 -169.99 -4.62 19.07 16 18 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.29 -6.00 7.11 56.52 0.40 -5.60 16 20 H -0.29 -6.10 7.11 56.52 0.40 -5.69 16 21 C 0.01 0.16 5.81 -27.26 -0.16 0.00 16 22 C -0.11 -2.26 5.53 -26.41 -0.15 -2.41 16 23 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.08 0.53 6.66 -51.92 -0.35 0.19 16 26 H 0.41 4.39 6.73 -40.82 -0.27 4.11 16 27 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.03 0.64 5.16 -51.93 -0.27 0.37 16 30 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.27 7.84 6.65 -40.82 -0.27 7.57 16 32 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 33 H 0.04 0.95 6.18 -51.93 -0.32 0.63 16 34 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 301.29 15.07 4.54 4.54 Total: -1.00 -29.10 301.29 -8.09 -37.20 By element: Atomic # 1 Polarization: 2.51 SS G_CDS: -4.05 Total: -1.54 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: -3.53 Total: -9.79 kcal Atomic # 7 Polarization: -49.35 SS G_CDS: 1.09 Total: -48.26 kcal Atomic # 14 Polarization: 23.70 SS G_CDS: -4.62 Total: 19.07 kcal Atomic # 17 Polarization: 0.29 SS G_CDS: -1.52 Total: -1.23 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -29.10 -8.09 -37.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167845066.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.555 kcal (2) G-P(sol) polarization free energy of solvation -29.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds