Wall clock time and date at job start Tue Mar 31 2020 05:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.47951 * 111.00119 * 2 1 4 4 C 1.53933 * 86.18397 * 222.41897 * 3 2 1 5 5 C 1.53002 * 113.73119 * 138.08274 * 4 3 2 6 6 N 1.46504 * 109.47015 * 176.90303 * 5 4 3 7 7 C 1.38533 * 120.00278 * 179.97438 * 6 5 4 8 8 C 1.40045 * 120.44711 * 359.97438 * 7 6 5 9 9 C 1.38805 * 118.59175 * 179.97438 * 8 7 6 10 10 Cl 1.73597 * 120.33646 * 179.97438 * 9 8 7 11 11 N 1.32205 * 119.32382 * 359.97438 * 9 8 7 12 12 C 1.33416 * 120.86039 * 0.02562 * 11 9 8 13 13 C 1.41581 * 119.23443 * 180.02562 * 12 11 9 14 14 H 1.08003 * 119.99921 * 179.97438 * 13 12 11 15 15 C 1.40048 * 120.00157 * 359.97232 * 13 12 11 16 16 N 1.30694 * 119.99747 * 0.02562 * 15 13 12 17 17 Si 1.86792 * 120.00328 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47066 * 60.00242 * 17 15 13 19 19 H 1.48501 * 109.47377 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47362 * 300.00448 * 17 15 13 21 21 N 1.32566 * 120.45154 * 179.97438 * 7 6 5 22 22 C 1.48192 * 111.06994 * 260.56894 * 2 1 3 23 23 H 1.09003 * 109.47262 * 59.99974 * 1 2 3 24 24 H 1.09012 * 109.47280 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.46909 * 299.99409 * 1 2 3 26 26 H 1.09004 * 113.75449 * 108.09797 * 3 2 1 27 27 H 1.09002 * 113.85999 * 336.75301 * 3 2 1 28 28 H 1.08997 * 113.73400 * 269.25656 * 4 3 2 29 29 H 1.08994 * 109.47588 * 56.89687 * 5 4 3 30 30 H 1.09001 * 109.46731 * 296.89678 * 5 4 3 31 31 H 0.97004 * 119.99552 * 359.97438 * 6 5 4 32 32 H 1.08003 * 120.70506 * 359.70531 * 8 7 6 33 33 H 0.97000 * 119.99862 * 179.97438 * 16 15 13 34 34 H 1.09000 * 113.75706 * 23.23987 * 22 2 1 35 35 H 1.08997 * 113.82668 * 251.80903 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9992 1.3812 0.0000 4 6 3.0211 0.8792 -1.0360 5 6 3.2610 1.8571 -2.1880 6 7 4.2977 1.3225 -3.0745 7 6 4.6870 2.0375 -4.1953 8 6 4.0954 3.2721 -4.4904 9 6 4.5151 3.9561 -5.6229 10 17 3.8120 5.4897 -6.0319 11 7 5.4557 3.4277 -6.3870 12 6 6.0028 2.2495 -6.0828 13 6 7.0080 1.7158 -6.9251 14 1 7.4595 0.7632 -6.6903 15 6 7.4167 2.4231 -8.0626 16 7 6.8706 3.5760 -8.3464 17 14 8.7423 1.7187 -9.1742 18 1 8.2949 0.4074 -9.7087 19 1 8.9922 2.6536 -10.3006 20 1 9.9942 1.5351 -8.3968 21 7 5.6246 1.5624 -5.0032 22 6 2.0017 -0.2266 -1.3641 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0278 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 2.4459 1.6801 0.9483 27 1 1.3022 2.1211 -0.3935 28 1 3.9458 0.5068 -0.5954 29 1 3.5852 2.8177 -1.7878 30 1 2.3364 1.9909 -2.7496 31 1 4.7116 0.4678 -2.8765 32 1 3.3259 3.6813 -3.8526 33 1 7.1539 4.0661 -9.1341 34 1 1.3042 0.0406 -2.1580 35 1 2.4505 -1.2100 -1.5039 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170252067.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:18 Heat of formation + Delta-G solvation = 77.827936 kcal Electronic energy + Delta-G solvation = -19151.362004 eV Core-core repulsion = 16018.405394 eV Total energy + Delta-G solvation = -3132.956610 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.094 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.17569 -38.97923 -35.80270 -35.45139 -33.52931 -31.76120 -30.78055 -29.23440 -26.53938 -26.30720 -26.15246 -22.72692 -22.09458 -21.22452 -19.82259 -17.95790 -16.74666 -16.15714 -16.03619 -15.26577 -15.04233 -14.82497 -14.24449 -14.06001 -13.77641 -13.35641 -13.27546 -12.93858 -12.79753 -12.65425 -11.72172 -11.47988 -11.37914 -11.30604 -11.18304 -10.90481 -10.81801 -10.75247 -10.41474 -10.21169 -9.92780 -9.12979 -9.04994 -9.03353 -8.26398 -7.49239 -7.16444 -6.57148 -4.80713 2.52673 2.96698 2.97442 3.05384 3.08133 3.14700 3.70905 3.72814 3.88878 4.36095 4.61748 4.62322 4.86634 5.07261 5.18142 5.21502 5.26661 5.45539 5.54999 5.60631 5.67785 5.79707 5.89249 6.05995 6.08301 6.12443 6.35624 6.41558 6.78107 6.81774 6.92829 7.12905 7.70996 8.10518 8.20263 8.52553 8.59073 9.05029 10.08733 10.23413 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.021976 B = 0.003961 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.834787 B = 7067.706293 C = 8132.830968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.011 4.011 2 N -0.488 5.488 3 C 0.010 3.990 4 C -0.125 4.125 5 C 0.146 3.854 6 N -0.728 5.728 7 C 0.455 3.545 8 C -0.406 4.406 9 C 0.269 3.731 10 Cl -0.083 7.083 11 N -0.528 5.528 12 C 0.435 3.565 13 C -0.395 4.395 14 H 0.096 0.904 15 C 0.065 3.935 16 N -0.702 5.702 17 Si 0.920 3.080 18 H -0.263 1.263 19 H -0.276 1.276 20 H -0.263 1.263 21 N -0.641 5.641 22 C 0.006 3.994 23 H 0.036 0.964 24 H 0.069 0.931 25 H 0.067 0.933 26 H 0.091 0.909 27 H 0.073 0.927 28 H 0.106 0.894 29 H 0.061 0.939 30 H 0.056 0.944 31 H 0.398 0.602 32 H 0.110 0.890 33 H 0.278 0.722 34 H 0.074 0.926 35 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.028 -2.615 10.201 13.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 N -0.210 5.210 3 C -0.119 4.119 4 C -0.144 4.144 5 C 0.020 3.980 6 N -0.365 5.365 7 C 0.208 3.792 8 C -0.439 4.439 9 C 0.088 3.912 10 Cl -0.055 7.055 11 N -0.249 5.249 12 C 0.199 3.801 13 C -0.430 4.430 14 H 0.114 0.886 15 C -0.163 4.163 16 N -0.323 5.323 17 Si 0.744 3.256 18 H -0.187 1.187 19 H -0.201 1.201 20 H -0.187 1.187 21 N -0.371 5.371 22 C -0.122 4.122 23 H 0.054 0.946 24 H 0.088 0.912 25 H 0.086 0.914 26 H 0.109 0.891 27 H 0.091 0.909 28 H 0.124 0.876 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.233 0.767 32 H 0.128 0.872 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.329 -3.013 9.954 12.723 hybrid contribution -0.551 0.598 -0.524 0.967 sum -7.880 -2.415 9.430 12.524 Atomic orbital electron populations 1.22861 0.89732 1.02381 1.01072 1.68505 1.09056 1.18509 1.24919 1.23925 0.96678 0.91544 0.99797 1.23208 0.99023 0.96318 0.95880 1.21185 0.91194 0.96233 0.89387 1.44011 1.43339 1.23944 1.25243 1.18136 0.88303 0.86999 0.85766 1.20906 1.15558 1.01329 1.06133 1.21441 0.92487 0.86818 0.90464 1.98293 1.82191 1.30694 1.94338 1.68592 1.11651 1.13914 1.30764 1.19455 0.90503 0.83555 0.86578 1.19327 1.14576 1.05038 1.04050 0.88641 1.26128 0.97413 0.94545 0.98192 1.70141 1.31719 1.09354 1.21078 0.86175 0.80694 0.79695 0.79074 1.18715 1.20093 1.18712 1.68229 1.20556 1.38363 1.09996 1.24137 0.96906 1.00433 0.90747 0.94585 0.91225 0.91427 0.89083 0.90850 0.87622 0.92092 0.92539 0.76729 0.87226 0.91107 0.90796 0.89180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.10 9.65 60.06 0.58 0.48 16 2 N -0.49 -4.98 6.55 -246.39 -1.61 -6.59 16 3 C 0.01 0.09 7.55 -2.77 -0.02 0.07 16 4 C -0.13 -1.31 3.93 -89.69 -0.35 -1.66 16 5 C 0.15 1.92 4.76 -4.04 -0.02 1.90 16 6 N -0.73 -12.47 5.71 -60.25 -0.34 -12.81 16 7 C 0.46 10.28 7.71 -154.99 -1.19 9.08 16 8 C -0.41 -9.17 9.23 -38.69 -0.36 -9.53 16 9 C 0.27 6.70 7.33 -17.18 -0.13 6.57 16 10 Cl -0.08 -1.77 29.15 -51.86 -1.51 -3.28 16 11 N -0.53 -14.75 7.86 -9.84 -0.08 -14.83 16 12 C 0.43 12.20 7.37 -158.35 -1.17 11.03 16 13 C -0.39 -10.64 9.37 -37.63 -0.35 -10.99 16 14 H 0.10 2.45 7.85 -52.48 -0.41 2.03 16 15 C 0.07 1.63 5.50 -17.36 -0.10 1.54 16 16 N -0.70 -18.45 11.42 55.55 0.63 -17.82 16 17 Si 0.92 18.28 29.56 -169.99 -5.02 13.26 16 18 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 19 H -0.28 -5.32 7.11 56.52 0.40 -4.92 16 20 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 21 N -0.64 -16.64 10.39 -11.89 -0.12 -16.77 16 22 C 0.01 0.07 7.54 -2.63 -0.02 0.05 16 23 H 0.04 0.30 7.63 -51.93 -0.40 -0.10 16 24 H 0.07 0.56 8.14 -51.92 -0.42 0.14 16 25 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.07 0.63 7.88 -51.93 -0.41 0.22 16 28 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.06 0.81 7.97 -51.93 -0.41 0.40 16 30 H 0.06 0.76 7.70 -51.93 -0.40 0.36 16 31 H 0.40 6.39 8.60 -40.82 -0.35 6.04 16 32 H 0.11 2.17 6.85 -52.48 -0.36 1.81 16 33 H 0.28 6.60 8.29 -40.82 -0.34 6.26 16 34 H 0.07 0.77 7.40 -51.93 -0.38 0.39 16 35 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 312.78 15.07 4.71 4.71 Total: -1.00 -29.96 312.78 -10.85 -40.81 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -4.37 Total: 4.77 kcal Atomic # 6 Polarization: 11.66 SS G_CDS: -3.12 Total: 8.54 kcal Atomic # 7 Polarization: -67.29 SS G_CDS: -1.53 Total: -68.81 kcal Atomic # 14 Polarization: 18.28 SS G_CDS: -5.02 Total: 13.26 kcal Atomic # 17 Polarization: -1.77 SS G_CDS: -1.51 Total: -3.28 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -29.96 -10.85 -40.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170252067.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.638 kcal (2) G-P(sol) polarization free energy of solvation -29.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds