Wall clock time and date at job start Tue Mar 31 2020 05:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.47951 * 111.00119 * 2 1 4 4 C 1.53933 * 86.18397 * 222.41897 * 3 2 1 5 5 C 1.53002 * 113.73119 * 138.08274 * 4 3 2 6 6 N 1.46504 * 109.47015 * 176.90303 * 5 4 3 7 7 C 1.38533 * 120.00278 * 179.97438 * 6 5 4 8 8 C 1.40045 * 120.44711 * 359.97438 * 7 6 5 9 9 C 1.38805 * 118.59175 * 179.97438 * 8 7 6 10 10 Cl 1.73597 * 120.33646 * 179.97438 * 9 8 7 11 11 N 1.32205 * 119.32382 * 359.97438 * 9 8 7 12 12 C 1.33416 * 120.86039 * 0.02562 * 11 9 8 13 13 C 1.41581 * 119.23443 * 180.02562 * 12 11 9 14 14 H 1.08003 * 119.99921 * 179.97438 * 13 12 11 15 15 C 1.40048 * 120.00157 * 359.97232 * 13 12 11 16 16 N 1.30694 * 119.99747 * 0.02562 * 15 13 12 17 17 Si 1.86792 * 120.00328 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47066 * 60.00242 * 17 15 13 19 19 H 1.48501 * 109.47377 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47362 * 300.00448 * 17 15 13 21 21 N 1.32566 * 120.45154 * 179.97438 * 7 6 5 22 22 C 1.48192 * 111.06994 * 260.56894 * 2 1 3 23 23 H 1.09003 * 109.47262 * 59.99974 * 1 2 3 24 24 H 1.09012 * 109.47280 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.46909 * 299.99409 * 1 2 3 26 26 H 1.09004 * 113.75449 * 108.09797 * 3 2 1 27 27 H 1.09002 * 113.85999 * 336.75301 * 3 2 1 28 28 H 1.08997 * 113.73400 * 269.25656 * 4 3 2 29 29 H 1.08994 * 109.47588 * 56.89687 * 5 4 3 30 30 H 1.09001 * 109.46731 * 296.89678 * 5 4 3 31 31 H 0.97004 * 119.99552 * 359.97438 * 6 5 4 32 32 H 1.08003 * 120.70506 * 359.70531 * 8 7 6 33 33 H 0.97000 * 119.99862 * 179.97438 * 16 15 13 34 34 H 1.09000 * 113.75706 * 23.23987 * 22 2 1 35 35 H 1.08997 * 113.82668 * 251.80903 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9992 1.3812 0.0000 4 6 3.0211 0.8792 -1.0360 5 6 3.2610 1.8571 -2.1880 6 7 4.2977 1.3225 -3.0745 7 6 4.6870 2.0375 -4.1953 8 6 4.0954 3.2721 -4.4904 9 6 4.5151 3.9561 -5.6229 10 17 3.8120 5.4897 -6.0319 11 7 5.4557 3.4277 -6.3870 12 6 6.0028 2.2495 -6.0828 13 6 7.0080 1.7158 -6.9251 14 1 7.4595 0.7632 -6.6903 15 6 7.4167 2.4231 -8.0626 16 7 6.8706 3.5760 -8.3464 17 14 8.7423 1.7187 -9.1742 18 1 8.2949 0.4074 -9.7087 19 1 8.9922 2.6536 -10.3006 20 1 9.9942 1.5351 -8.3968 21 7 5.6246 1.5624 -5.0032 22 6 2.0017 -0.2266 -1.3641 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0278 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 2.4459 1.6801 0.9483 27 1 1.3022 2.1211 -0.3935 28 1 3.9458 0.5068 -0.5954 29 1 3.5852 2.8177 -1.7878 30 1 2.3364 1.9909 -2.7496 31 1 4.7116 0.4678 -2.8765 32 1 3.3259 3.6813 -3.8526 33 1 7.1539 4.0661 -9.1341 34 1 1.3042 0.0406 -2.1580 35 1 2.4505 -1.2100 -1.5039 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170252067.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:18 Heat of formation + Delta-G solvation = 56.840294 kcal Electronic energy + Delta-G solvation = -19152.272097 eV Core-core repulsion = 16018.405394 eV Total energy + Delta-G solvation = -3133.866703 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.094 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.14125 -40.67247 -37.47128 -37.08260 -35.32339 -33.35485 -32.25772 -30.70165 -28.33561 -27.41417 -27.03984 -24.11837 -23.72457 -22.73484 -20.71542 -19.71863 -18.36922 -17.83177 -16.96349 -16.59046 -16.25055 -16.00364 -15.79165 -15.53769 -15.23160 -14.93446 -14.66288 -14.47322 -13.73392 -13.61500 -13.19848 -13.09195 -12.81309 -12.74298 -12.39850 -12.28563 -12.02805 -11.94610 -11.82593 -11.69249 -11.40849 -10.91614 -10.89366 -10.11540 -9.81442 -9.41565 -8.80199 -8.42657 -6.78991 0.64794 1.13877 1.14976 1.43277 1.56707 1.57463 2.20858 2.38423 2.76044 2.95112 3.48885 3.72157 3.88098 4.16696 4.23087 4.24715 4.29592 4.45326 4.53331 4.56813 4.63507 4.65046 4.72525 4.80942 4.89314 4.98034 4.98901 5.12487 5.24781 5.33236 5.37361 6.02061 6.04989 6.17762 6.50785 6.69184 6.76527 7.24122 8.20801 8.37648 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.021976 B = 0.003961 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.834787 B = 7067.706293 C = 8132.830968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.012 4.012 2 N -0.501 5.501 3 C 0.016 3.984 4 C -0.118 4.118 5 C 0.145 3.855 6 N -0.713 5.713 7 C 0.448 3.552 8 C -0.400 4.400 9 C 0.245 3.755 10 Cl -0.058 7.058 11 N -0.564 5.564 12 C 0.409 3.591 13 C -0.429 4.429 14 H 0.095 0.905 15 C 0.025 3.975 16 N -0.740 5.740 17 Si 1.001 2.999 18 H -0.257 1.257 19 H -0.265 1.265 20 H -0.257 1.257 21 N -0.665 5.665 22 C 0.005 3.995 23 H 0.038 0.962 24 H 0.071 0.929 25 H 0.077 0.923 26 H 0.101 0.899 27 H 0.083 0.917 28 H 0.107 0.893 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.404 0.596 32 H 0.138 0.862 33 H 0.285 0.715 34 H 0.073 0.927 35 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.497 -2.850 11.042 14.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 N -0.223 5.223 3 C -0.113 4.113 4 C -0.137 4.137 5 C 0.020 3.980 6 N -0.349 5.349 7 C 0.200 3.800 8 C -0.432 4.432 9 C 0.067 3.933 10 Cl -0.030 7.030 11 N -0.287 5.287 12 C 0.172 3.828 13 C -0.465 4.465 14 H 0.114 0.886 15 C -0.200 4.200 16 N -0.361 5.361 17 Si 0.820 3.180 18 H -0.181 1.181 19 H -0.189 1.189 20 H -0.181 1.181 21 N -0.397 5.397 22 C -0.123 4.123 23 H 0.057 0.943 24 H 0.090 0.910 25 H 0.096 0.904 26 H 0.119 0.881 27 H 0.101 0.899 28 H 0.125 0.875 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.239 0.761 32 H 0.156 0.844 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -7.859 -3.241 10.867 13.797 hybrid contribution -0.558 0.697 -0.623 1.089 sum -8.418 -2.544 10.244 13.501 Atomic orbital electron populations 1.22898 0.88733 1.02792 1.01693 1.68502 1.10176 1.19107 1.24542 1.23964 0.96128 0.91418 0.99756 1.23129 0.99481 0.95892 0.95190 1.21415 0.89930 0.97138 0.89487 1.44181 1.43344 1.23579 1.23774 1.18508 0.87504 0.87504 0.86518 1.21178 1.15495 1.01006 1.05561 1.21910 0.92407 0.87993 0.91029 1.98283 1.81546 1.28883 1.94295 1.68580 1.13342 1.14537 1.32261 1.19860 0.91230 0.84205 0.87525 1.19686 1.15533 1.05722 1.05514 0.88649 1.27083 0.99429 0.94522 0.98960 1.70225 1.33263 1.10702 1.21918 0.84988 0.77210 0.79006 0.76841 1.18109 1.18887 1.18118 1.68266 1.22119 1.38833 1.10476 1.24132 0.96855 1.00270 0.91062 0.94329 0.91013 0.90410 0.88070 0.89881 0.87506 0.91644 0.92225 0.76074 0.84385 0.90438 0.90900 0.89343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.18 9.65 127.69 1.23 1.05 16 2 N -0.50 -9.10 6.55 -933.45 -6.12 -15.22 16 3 C 0.02 0.26 7.55 86.41 0.65 0.91 16 4 C -0.12 -2.21 3.93 -10.15 -0.04 -2.25 16 5 C 0.14 3.49 4.76 86.38 0.41 3.90 16 6 N -0.71 -23.54 5.71 -344.55 -1.97 -25.51 16 7 C 0.45 20.09 7.71 133.40 1.03 21.12 16 8 C -0.40 -17.75 9.23 22.84 0.21 -17.54 16 9 C 0.25 12.27 7.33 84.77 0.62 12.89 16 10 Cl -0.06 -2.44 29.15 -2.72 -0.08 -2.52 16 11 N -0.56 -32.26 7.86 -185.03 -1.45 -33.71 16 12 C 0.41 23.57 7.37 135.17 1.00 24.56 16 13 C -0.43 -23.78 9.37 23.53 0.22 -23.56 16 14 H 0.10 5.04 7.85 -2.91 -0.02 5.02 16 15 C 0.02 1.24 5.50 85.30 0.47 1.71 16 16 N -0.74 -39.61 11.42 21.84 0.25 -39.36 16 17 Si 1.00 37.56 29.56 68.60 2.03 39.58 16 18 H -0.26 -9.31 7.11 99.48 0.71 -8.61 16 19 H -0.26 -9.33 7.11 99.48 0.71 -8.62 16 20 H -0.26 -9.32 7.11 99.48 0.71 -8.62 16 21 N -0.67 -35.13 10.39 -191.54 -1.99 -37.12 16 22 C 0.01 0.10 7.54 86.36 0.65 0.75 16 23 H 0.04 0.55 7.63 -2.39 -0.02 0.53 16 24 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 25 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.10 1.43 8.14 -2.38 -0.02 1.41 16 27 H 0.08 1.17 7.88 -2.39 -0.02 1.15 16 28 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.07 1.57 7.97 -2.39 -0.02 1.56 16 30 H 0.06 1.45 7.70 -2.39 -0.02 1.43 16 31 H 0.40 12.53 8.60 -92.71 -0.80 11.74 16 32 H 0.14 5.18 6.85 -2.91 -0.02 5.16 16 33 H 0.28 13.70 8.29 -92.71 -0.77 12.93 16 34 H 0.07 1.39 7.40 -2.39 -0.02 1.37 16 35 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -65.65 312.78 -2.56 -68.20 By element: Atomic # 1 Polarization: 21.77 SS G_CDS: 0.32 Total: 22.10 kcal Atomic # 6 Polarization: 17.10 SS G_CDS: 6.45 Total: 23.55 kcal Atomic # 7 Polarization: -139.63 SS G_CDS: -11.28 Total: -150.91 kcal Atomic # 14 Polarization: 37.56 SS G_CDS: 2.03 Total: 39.58 kcal Atomic # 17 Polarization: -2.44 SS G_CDS: -0.08 Total: -2.52 kcal Total: -65.65 -2.56 -68.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170252067.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.041 kcal (2) G-P(sol) polarization free energy of solvation -65.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds