Wall clock time and date at job start Tue Mar 31 2020 05:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43208 * 179.97438 * 2 1 4 4 C 1.39663 * 120.09942 * 33.61368 * 3 2 1 5 5 C 1.38233 * 119.97577 * 180.02562 * 4 3 2 6 6 F 1.35096 * 119.90462 * 180.02562 * 5 4 3 7 7 C 1.38440 * 120.18947 * 0.02562 * 5 4 3 8 8 C 1.39007 * 120.20049 * 0.02562 * 7 5 4 9 9 N 1.39612 * 119.99272 * 179.97438 * 8 7 5 10 10 C 1.38688 * 119.99755 * 5.75140 * 9 8 7 11 11 C 1.38816 * 120.29632 * 256.10543 * 10 9 8 12 12 C 1.38112 * 120.02099 * 180.02562 * 11 10 9 13 13 C 1.38934 * 120.63531 * 0.02562 * 12 11 10 14 14 C 1.36423 * 120.60656 * 359.97438 * 13 12 11 15 15 C 1.40745 * 119.95298 * 0.02562 * 14 13 12 16 16 C 1.41007 * 120.31223 * 179.97438 * 15 14 13 17 17 H 1.07997 * 120.00358 * 204.31150 * 16 15 14 18 18 C 1.39915 * 119.99549 * 24.31491 * 16 15 14 19 19 N 1.30886 * 120.00342 * 19.00635 * 18 16 15 20 20 Si 1.86798 * 119.99884 * 198.99989 * 18 16 15 21 21 H 1.48505 * 109.46743 * 90.00146 * 20 18 16 22 22 H 1.48503 * 109.47379 * 210.00038 * 20 18 16 23 23 H 1.48493 * 109.47329 * 330.00531 * 20 18 16 24 24 C 1.38749 * 120.02074 * 0.23838 * 8 7 5 25 25 H 1.07999 * 120.01319 * 359.97438 * 4 3 2 26 26 H 1.07997 * 119.90131 * 179.97438 * 7 5 4 27 27 H 0.97000 * 120.00707 * 185.74867 * 9 8 7 28 28 H 1.08002 * 119.98608 * 359.97438 * 11 10 9 29 29 H 1.08004 * 119.68348 * 180.02562 * 12 11 10 30 30 H 1.08004 * 119.69448 * 180.02562 * 13 12 11 31 31 H 1.07993 * 120.02236 * 179.72327 * 14 13 12 32 32 H 0.97000 * 120.00316 * 179.97438 * 19 18 16 33 33 H 1.07993 * 120.09744 * 179.74079 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2689 -1.0053 -0.6689 5 6 4.6513 -1.0025 -0.6668 6 9 5.3278 -1.9760 -1.3147 7 6 5.3444 -0.0050 -0.0026 8 6 4.6545 0.9993 0.6665 9 7 5.3579 2.0029 1.3353 10 6 6.7395 2.0669 1.2336 11 6 7.5397 1.6396 2.2844 12 6 8.9150 1.7064 2.1772 13 6 9.5121 2.1996 1.0237 14 6 8.7505 2.6264 -0.0246 15 6 7.3466 2.5696 0.0576 16 6 6.5521 3.0093 -1.0212 17 1 5.5382 3.3375 -0.8465 18 6 7.0775 3.0202 -2.3179 19 7 8.1321 2.2994 -2.6029 20 14 6.2736 4.0636 -3.6425 21 1 6.8886 5.4153 -3.6489 22 1 6.4736 3.4225 -4.9670 23 1 4.8198 4.1826 -3.3645 24 6 3.2671 1.0017 0.6745 25 1 2.7311 -1.7856 -1.1869 26 1 6.4244 -0.0076 -0.0037 27 1 4.8803 2.6553 1.8711 28 1 7.0865 1.2556 3.1864 29 1 9.5323 1.3721 2.9979 30 1 10.5890 2.2446 0.9560 31 1 9.2244 3.0122 -0.9150 32 1 8.4961 2.3067 -3.5020 33 1 2.7299 1.7790 1.1974 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001175684166.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:06 Heat of formation + Delta-G solvation = 30.678659 kcal Electronic energy + Delta-G solvation = -20784.964307 eV Core-core repulsion = 17496.642944 eV Total energy + Delta-G solvation = -3288.321363 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.47288 -39.39653 -37.84950 -36.31589 -34.48675 -33.83403 -30.55730 -30.00677 -29.70541 -27.54669 -25.29334 -23.76847 -22.11666 -21.16661 -20.55547 -18.64325 -17.44712 -16.77494 -16.11394 -15.87887 -15.49233 -15.20969 -15.01629 -14.80894 -14.23629 -13.95501 -13.66099 -13.28233 -13.01711 -12.86419 -12.65234 -12.15759 -12.00223 -11.79693 -11.60296 -11.35828 -11.21620 -11.18624 -10.90374 -10.58717 -10.30470 -9.82656 -9.44033 -9.33156 -8.45304 -7.68284 -7.63210 -7.08477 -6.82701 -4.54907 1.04195 1.68859 2.57033 2.73059 2.77494 2.99469 3.02171 3.10860 3.19535 3.80188 3.81448 4.14490 4.25746 4.45297 4.78546 5.30040 5.35361 5.43082 5.58063 5.74563 6.05614 6.10420 6.24742 6.40985 6.43938 6.50925 6.66182 6.87347 6.96290 7.05891 7.15997 7.28757 7.54626 7.56279 7.73807 7.91462 8.03449 8.11004 8.29360 8.52946 8.66495 8.84897 9.96276 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.013060 B = 0.006913 C = 0.005668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.388871 B = 4049.395199 C = 4938.669179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C 0.271 3.729 3 C 0.031 3.969 4 C -0.182 4.182 5 C 0.140 3.860 6 F -0.138 7.138 7 C -0.169 4.169 8 C 0.266 3.734 9 N -0.651 5.651 10 C -0.021 4.021 11 C -0.079 4.079 12 C -0.242 4.242 13 C -0.099 4.099 14 C -0.156 4.156 15 C 0.117 3.883 16 C -0.442 4.442 17 H 0.081 0.919 18 C 0.079 3.921 19 N -0.778 5.778 20 Si 0.903 3.097 21 H -0.267 1.267 22 H -0.276 1.276 23 H -0.260 1.260 24 C -0.171 4.171 25 H 0.132 0.868 26 H 0.147 0.853 27 H 0.395 0.605 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.119 0.881 32 H 0.284 0.716 33 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.764 -1.658 2.928 4.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.108 5.108 2 C -0.045 4.045 3 C 0.027 3.973 4 C -0.206 4.206 5 C 0.120 3.880 6 F -0.117 7.117 7 C -0.193 4.193 8 C 0.159 3.841 9 N -0.270 5.270 10 C -0.115 4.115 11 C -0.099 4.099 12 C -0.262 4.262 13 C -0.118 4.118 14 C -0.176 4.176 15 C 0.113 3.887 16 C -0.470 4.470 17 H 0.099 0.901 18 C -0.141 4.141 19 N -0.402 5.402 20 Si 0.728 3.272 21 H -0.192 1.192 22 H -0.201 1.201 23 H -0.184 1.184 24 C -0.197 4.197 25 H 0.150 0.850 26 H 0.165 0.835 27 H 0.230 0.770 28 H 0.109 0.891 29 H 0.108 0.892 30 H 0.107 0.893 31 H 0.136 0.864 32 H 0.095 0.905 33 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -4.143 -1.748 2.686 5.238 hybrid contribution 0.227 0.530 -0.705 0.910 sum -3.916 -1.219 1.982 4.555 Atomic orbital electron populations 1.81200 1.12109 1.08493 1.09004 1.25682 0.92584 0.93063 0.93126 1.15179 0.83594 0.97166 1.01359 1.20564 0.92256 1.01449 1.06287 1.17056 0.89017 0.87255 0.94667 1.91490 1.80353 1.60655 1.79164 1.20913 1.02110 0.94418 1.01839 1.17378 0.89421 0.87575 0.89714 1.41215 1.04811 1.29324 1.51643 1.17240 0.81026 1.14628 0.98588 1.20714 0.93593 0.98642 0.96930 1.20216 0.93724 1.13300 0.98933 1.20498 0.97750 0.99448 0.94107 1.21008 0.93614 1.04661 0.98334 1.17765 0.92134 0.87586 0.91232 1.19451 1.00112 1.36621 0.90803 0.90107 1.25938 0.94347 0.93644 1.00204 1.69832 1.19237 1.28935 1.22216 0.86360 0.80907 0.80542 0.79435 1.19166 1.20091 1.18369 1.20463 0.92201 1.00922 1.06124 0.84992 0.83485 0.76966 0.89081 0.89245 0.89329 0.86362 0.90485 0.85224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -6.90 18.54 41.84 0.78 -6.13 16 2 C 0.27 3.93 15.33 -22.47 -0.34 3.59 16 3 C 0.03 0.45 5.73 -106.97 -0.61 -0.17 16 4 C -0.18 -2.65 9.73 -39.05 -0.38 -3.03 16 5 C 0.14 2.36 7.28 -39.51 -0.29 2.07 16 6 F -0.14 -2.40 17.26 2.25 0.04 -2.37 16 7 C -0.17 -3.10 9.18 -39.22 -0.36 -3.46 16 8 C 0.27 4.50 6.16 -83.84 -0.52 3.98 16 9 N -0.65 -11.26 4.68 -8.08 -0.04 -11.29 16 10 C -0.02 -0.44 4.53 -83.28 -0.38 -0.81 16 11 C -0.08 -1.55 9.96 -39.41 -0.39 -1.94 16 12 C -0.24 -4.82 10.03 -39.37 -0.40 -5.22 16 13 C -0.10 -2.10 9.96 -39.98 -0.40 -2.49 16 14 C -0.16 -3.62 8.64 -39.29 -0.34 -3.96 16 15 C 0.12 2.69 5.18 -106.63 -0.55 2.14 16 16 C -0.44 -10.28 8.30 -37.91 -0.31 -10.59 16 17 H 0.08 1.86 7.59 -52.49 -0.40 1.46 16 18 C 0.08 1.80 5.11 -17.33 -0.09 1.71 16 19 N -0.78 -18.34 11.02 55.55 0.61 -17.73 16 20 Si 0.90 17.57 29.60 -169.99 -5.03 12.54 16 21 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 22 H -0.28 -5.33 7.11 56.52 0.40 -4.93 16 23 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 24 C -0.17 -2.47 9.60 -38.93 -0.37 -2.85 16 25 H 0.13 1.66 8.06 -52.49 -0.42 1.23 16 26 H 0.15 3.12 6.78 -52.49 -0.36 2.76 16 27 H 0.39 5.79 8.83 -40.82 -0.36 5.43 16 28 H 0.09 1.60 8.06 -52.49 -0.42 1.17 16 29 H 0.09 1.59 8.06 -52.48 -0.42 1.17 16 30 H 0.09 1.68 8.06 -52.48 -0.42 1.25 16 31 H 0.12 2.86 6.20 -52.49 -0.33 2.53 16 32 H 0.28 6.16 8.30 -40.82 -0.34 5.82 16 33 H 0.13 1.58 8.06 -52.49 -0.42 1.16 16 LS Contribution 305.13 15.07 4.60 4.60 Total: -1.00 -24.31 305.13 -7.47 -31.77 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -2.69 Total: 9.64 kcal Atomic # 6 Polarization: -15.31 SS G_CDS: -5.73 Total: -21.05 kcal Atomic # 7 Polarization: -36.50 SS G_CDS: 1.35 Total: -35.15 kcal Atomic # 9 Polarization: -2.40 SS G_CDS: 0.04 Total: -2.37 kcal Atomic # 14 Polarization: 17.57 SS G_CDS: -5.03 Total: 12.54 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -24.31 -7.47 -31.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175684166.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.453 kcal (2) G-P(sol) polarization free energy of solvation -24.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds