Wall clock time and date at job start Tue Mar 31 2020 05:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39658 * 120.10127 * 299.13197 * 3 2 1 5 5 C 1.38218 * 119.96817 * 179.97438 * 4 3 2 6 6 F 1.35104 * 119.90417 * 179.97438 * 5 4 3 7 7 C 1.38453 * 120.18514 * 0.02562 * 5 4 3 8 8 C 1.38961 * 120.20717 * 359.95436 * 7 5 4 9 9 N 1.39742 * 119.98783 * 180.02562 * 8 7 5 10 10 C 1.39718 * 119.99927 * 334.46151 * 9 8 7 11 11 C 1.39351 * 119.95508 * 327.62931 * 10 9 8 12 12 C 1.38474 * 120.42340 * 179.76531 * 11 10 9 13 13 C 1.37695 * 120.32276 * 0.50993 * 12 11 10 14 14 C 1.40746 * 119.89878 * 359.74416 * 13 12 11 15 15 C 1.41416 * 120.20670 * 180.02562 * 14 13 12 16 16 H 1.07997 * 119.99760 * 25.45123 * 15 14 13 17 17 C 1.39928 * 119.99803 * 205.44793 * 15 14 13 18 18 N 1.30832 * 120.00157 * 15.67212 * 17 15 14 19 19 Si 1.86799 * 119.99854 * 195.67176 * 17 15 14 20 20 H 1.48504 * 109.46951 * 60.00183 * 19 17 15 21 21 H 1.48499 * 109.47099 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47186 * 300.00370 * 19 17 15 23 23 C 1.38302 * 119.95316 * 147.90159 * 10 9 8 24 24 C 1.38699 * 120.02520 * 0.04497 * 8 7 5 25 25 H 1.07997 * 120.01274 * 359.95897 * 4 3 2 26 26 H 1.07996 * 119.89224 * 179.97438 * 7 5 4 27 27 H 0.97004 * 119.99938 * 154.45574 * 9 8 7 28 28 H 1.08000 * 119.78369 * 359.97438 * 11 10 9 29 29 H 1.07994 * 119.83478 * 180.25189 * 12 11 10 30 30 H 1.08006 * 120.04826 * 179.76567 * 13 12 11 31 31 H 0.97006 * 119.99689 * 179.97438 * 18 17 15 32 32 H 1.08006 * 120.15780 * 359.95883 * 23 10 9 33 33 H 1.08000 * 120.08697 * 180.25432 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2687 -0.5872 1.0554 5 6 4.6509 -0.5855 1.0523 6 9 5.3274 -1.1542 2.0742 7 6 5.3440 -0.0018 0.0055 8 6 4.6544 0.5849 -1.0486 9 7 5.3586 1.1723 -2.1031 10 6 6.6534 1.6543 -1.8957 11 6 7.0097 2.1803 -0.6554 12 6 8.2917 2.6563 -0.4377 13 6 9.2261 2.6244 -1.4486 14 6 8.8794 2.1009 -2.7082 15 6 9.8341 2.0645 -3.7508 16 1 10.8881 2.0360 -3.5171 17 6 9.4130 2.0653 -5.0852 18 7 8.1851 2.4044 -5.3836 19 14 10.6041 1.5822 -6.4407 20 1 11.0747 0.1921 -6.2139 21 1 9.9177 1.6636 -7.7550 22 1 11.7666 2.5062 -6.4307 23 6 7.5782 1.6138 -2.9232 24 6 3.2674 0.5881 -1.0544 25 1 2.7308 -1.0427 1.8736 26 1 6.4240 -0.0028 0.0082 27 1 4.9484 1.2453 -2.9791 28 1 6.2822 2.2139 0.1421 29 1 8.5587 3.0582 0.5285 30 1 10.2237 3.0003 -1.2750 31 1 7.8934 2.4054 -6.3087 32 1 7.3021 1.2098 -3.8861 33 1 2.7304 1.0402 -1.8752 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001175684737.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:17 Heat of formation + Delta-G solvation = 29.398227 kcal Electronic energy + Delta-G solvation = -20029.287403 eV Core-core repulsion = 16740.910516 eV Total energy + Delta-G solvation = -3288.376887 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -48.85102 -39.78347 -37.92095 -36.56072 -34.98089 -33.50590 -31.00941 -30.22711 -29.67451 -27.47175 -25.48036 -24.09029 -22.56882 -21.13296 -20.66088 -18.96101 -17.50754 -16.70467 -16.41131 -16.27970 -15.67539 -15.45195 -15.28877 -14.78070 -14.64316 -13.99874 -13.63237 -13.44418 -13.29151 -13.00019 -12.74718 -12.44075 -12.27315 -11.96424 -11.74253 -11.61014 -11.33626 -11.20098 -10.92245 -10.67956 -10.18841 -9.87788 -9.73861 -9.29831 -8.83217 -8.31802 -7.54919 -6.96727 -6.62972 -4.52024 0.65709 1.20403 2.50231 2.61624 2.78127 2.98244 2.99929 3.02421 3.13811 3.45845 3.76607 3.83930 3.87952 4.39105 4.50662 4.95511 4.97192 5.15906 5.33121 5.51918 5.70111 6.04969 6.06796 6.09864 6.20449 6.34668 6.57914 6.71125 6.89725 6.91621 7.10391 7.13679 7.32064 7.50641 7.66121 7.79220 7.91269 8.16206 8.19929 8.51839 8.76045 8.80556 10.06116 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.022875 B = 0.003986 C = 0.003628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.758169 B = 7022.937736 C = 7715.926404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C 0.265 3.735 3 C 0.032 3.968 4 C -0.166 4.166 5 C 0.137 3.863 6 F -0.134 7.134 7 C -0.177 4.177 8 C 0.241 3.759 9 N -0.673 5.673 10 C 0.162 3.838 11 C -0.269 4.269 12 C -0.073 4.073 13 C -0.235 4.235 14 C 0.128 3.872 15 C -0.460 4.460 16 H 0.079 0.921 17 C 0.077 3.923 18 N -0.795 5.795 19 Si 0.909 3.091 20 H -0.263 1.263 21 H -0.278 1.278 22 H -0.265 1.265 23 C -0.189 4.189 24 C -0.151 4.151 25 H 0.138 0.862 26 H 0.153 0.847 27 H 0.409 0.591 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.281 0.719 32 H 0.124 0.876 33 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.198 -4.132 5.290 8.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.096 5.096 2 C -0.051 4.051 3 C 0.028 3.972 4 C -0.189 4.189 5 C 0.117 3.883 6 F -0.113 7.113 7 C -0.201 4.201 8 C 0.137 3.863 9 N -0.293 5.293 10 C 0.068 3.932 11 C -0.290 4.290 12 C -0.092 4.092 13 C -0.255 4.255 14 C 0.124 3.876 15 C -0.489 4.489 16 H 0.097 0.903 17 C -0.141 4.141 18 N -0.420 5.420 19 Si 0.734 3.266 20 H -0.188 1.188 21 H -0.203 1.203 22 H -0.189 1.189 23 C -0.211 4.211 24 C -0.176 4.176 25 H 0.156 0.844 26 H 0.171 0.829 27 H 0.245 0.755 28 H 0.112 0.888 29 H 0.111 0.889 30 H 0.112 0.888 31 H 0.092 0.908 32 H 0.142 0.858 33 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -6.960 -4.060 5.145 9.560 hybrid contribution 0.893 -0.127 -0.878 1.259 sum -6.067 -4.187 4.267 8.517 Atomic orbital electron populations 1.81242 1.11989 1.08513 1.07830 1.25576 0.92479 0.93540 0.93500 1.15228 0.83922 1.01870 0.96161 1.20719 0.92296 1.05660 1.00241 1.17045 0.89078 0.96308 0.85912 1.91519 1.80226 1.82451 1.57102 1.21257 1.02500 1.01428 0.94920 1.17256 0.89717 0.90381 0.88955 1.42281 1.14793 1.61888 1.10364 1.17582 0.82839 0.97205 0.95543 1.20183 0.97627 1.14513 0.96725 1.20370 0.93230 0.98450 0.97180 1.21026 0.99020 1.10091 0.95385 1.17382 0.91758 0.86924 0.91494 1.19575 0.94657 1.44660 0.90045 0.90260 1.25904 0.95749 0.92162 1.00314 1.69793 1.17698 1.33521 1.20982 0.86342 0.80882 0.80373 0.79027 1.18773 1.20321 1.18944 1.21082 0.93681 1.07791 0.98566 1.20729 0.92312 1.04713 0.99874 0.84411 0.82903 0.75503 0.88803 0.88946 0.88809 0.90795 0.85834 0.84589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -5.88 18.54 41.84 0.78 -5.10 16 2 C 0.26 3.21 15.33 -22.47 -0.34 2.87 16 3 C 0.03 0.37 5.73 -106.97 -0.61 -0.24 16 4 C -0.17 -1.84 9.73 -39.06 -0.38 -2.22 16 5 C 0.14 1.75 7.29 -39.51 -0.29 1.46 16 6 F -0.13 -1.79 17.26 2.25 0.04 -1.75 16 7 C -0.18 -2.56 7.86 -39.23 -0.31 -2.87 16 8 C 0.24 3.42 6.03 -83.81 -0.51 2.91 16 9 N -0.67 -10.94 5.46 -8.49 -0.05 -10.99 16 10 C 0.16 3.27 5.88 -83.83 -0.49 2.78 16 11 C -0.27 -5.37 7.77 -39.08 -0.30 -5.67 16 12 C -0.07 -1.51 10.02 -39.69 -0.40 -1.91 16 13 C -0.24 -5.33 9.79 -38.83 -0.38 -5.71 16 14 C 0.13 3.13 5.57 -106.85 -0.60 2.54 16 15 C -0.46 -11.38 9.06 -37.74 -0.34 -11.72 16 16 H 0.08 1.89 7.89 -52.49 -0.41 1.48 16 17 C 0.08 1.79 5.18 -17.34 -0.09 1.70 16 18 N -0.79 -18.97 10.89 55.55 0.61 -18.36 16 19 Si 0.91 17.58 29.59 -169.99 -5.03 12.55 16 20 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 21 H -0.28 -5.26 7.11 56.52 0.40 -4.86 16 22 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 23 C -0.19 -4.39 8.59 -38.67 -0.33 -4.72 16 24 C -0.15 -1.79 9.64 -38.94 -0.38 -2.17 16 25 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 26 H 0.15 2.47 6.33 -52.49 -0.33 2.14 16 27 H 0.41 5.98 8.89 -40.82 -0.36 5.62 16 28 H 0.09 1.73 6.61 -52.49 -0.35 1.38 16 29 H 0.09 1.66 8.06 -52.49 -0.42 1.23 16 30 H 0.09 2.01 8.06 -52.48 -0.42 1.59 16 31 H 0.28 6.15 8.30 -40.82 -0.34 5.81 16 32 H 0.12 2.96 6.15 -52.48 -0.32 2.64 16 33 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 LS Contribution 302.91 15.07 4.56 4.56 Total: -1.00 -25.15 302.91 -7.44 -32.59 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -2.60 Total: 9.47 kcal Atomic # 6 Polarization: -17.23 SS G_CDS: -5.75 Total: -22.97 kcal Atomic # 7 Polarization: -35.79 SS G_CDS: 1.33 Total: -34.45 kcal Atomic # 9 Polarization: -1.79 SS G_CDS: 0.04 Total: -1.75 kcal Atomic # 14 Polarization: 17.58 SS G_CDS: -5.03 Total: 12.55 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -25.15 -7.44 -32.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175684737.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.990 kcal (2) G-P(sol) polarization free energy of solvation -25.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds