Wall clock time and date at job start Tue Mar 31 2020 05:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39664 * 120.10379 * 35.78424 * 3 2 1 5 5 C 1.38220 * 119.98248 * 180.02562 * 4 3 2 6 6 F 1.35095 * 119.90975 * 179.97438 * 5 4 3 7 7 C 1.38446 * 120.18761 * 0.02562 * 5 4 3 8 8 C 1.39012 * 120.20129 * 359.97438 * 7 5 4 9 9 N 1.39610 * 119.99234 * 180.02562 * 8 7 5 10 10 C 1.38816 * 120.00287 * 212.55545 * 9 8 7 11 11 C 1.39608 * 119.84924 * 203.83858 * 10 9 8 12 12 C 1.36311 * 120.15676 * 179.71891 * 11 10 9 13 13 C 1.40901 * 119.84174 * 0.57512 * 12 11 10 14 14 C 1.41103 * 120.15497 * 179.67693 * 13 12 11 15 15 H 1.07996 * 119.99930 * 205.93734 * 14 13 12 16 16 C 1.39852 * 120.00039 * 25.94160 * 14 13 12 17 17 N 1.30919 * 119.99675 * 15.42818 * 16 14 13 18 18 Si 1.86792 * 119.99943 * 195.43255 * 16 14 13 19 19 H 1.48495 * 109.47334 * 59.99815 * 18 16 14 20 20 H 1.48499 * 109.47039 * 179.97438 * 18 16 14 21 21 H 1.48506 * 109.46924 * 299.99524 * 18 16 14 22 22 C 1.40907 * 119.68915 * 359.69980 * 13 12 11 23 23 C 1.36307 * 119.84408 * 359.97438 * 22 13 12 24 24 C 1.38747 * 120.01390 * 359.71760 * 8 7 5 25 25 H 1.07998 * 120.00916 * 359.97438 * 4 3 2 26 26 H 1.07994 * 119.90309 * 179.97438 * 7 5 4 27 27 H 0.97000 * 120.00316 * 32.56195 * 9 8 7 28 28 H 1.07997 * 119.91589 * 0.02562 * 11 10 9 29 29 H 1.07999 * 120.07633 * 180.27504 * 12 11 10 30 30 H 0.96994 * 119.98933 * 180.02562 * 17 16 14 31 31 H 1.08003 * 120.07390 * 179.97438 * 22 13 12 32 32 H 1.08004 * 119.92189 * 180.02562 * 23 22 13 33 33 H 1.08007 * 120.09274 * 180.27647 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2689 -0.9792 -0.7065 5 6 4.6511 -0.9765 -0.7044 6 9 5.3277 -1.9253 -1.3878 7 6 5.3443 -0.0049 -0.0029 8 6 4.6544 0.9741 0.7030 9 7 5.3579 1.9521 1.4084 10 6 4.8323 2.4742 2.5824 11 6 5.2283 3.7399 3.0184 12 6 4.7118 4.2610 4.1673 13 6 3.7854 3.5140 4.9216 14 6 3.2518 4.0442 6.1154 15 1 2.9002 3.3803 6.8913 16 6 3.1782 5.4293 6.2938 17 7 3.3126 6.2296 5.2665 18 14 2.8882 6.1374 7.9978 19 1 3.9884 5.7171 8.9023 20 1 2.8524 7.6198 7.9183 21 1 1.5938 5.6381 8.5276 22 6 3.3947 2.2348 4.4784 23 6 3.9141 1.7288 3.3242 24 6 3.2670 0.9831 0.7013 25 1 2.7311 -1.7393 -1.2537 26 1 6.4243 -0.0074 -0.0040 27 1 6.2138 2.2670 1.0782 28 1 5.9417 4.3095 2.4415 29 1 5.0158 5.2422 4.5011 30 1 3.2619 7.1903 5.3904 31 1 2.6853 1.6566 5.0519 32 1 3.6151 0.7486 2.9831 33 1 2.7297 1.7457 1.2456 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001175685210.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:08 Heat of formation + Delta-G solvation = 32.694082 kcal Electronic energy + Delta-G solvation = -19947.521528 eV Core-core repulsion = 16659.287560 eV Total energy + Delta-G solvation = -3288.233968 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -48.94715 -39.81943 -37.91276 -36.49955 -35.10511 -33.27851 -31.10567 -30.31254 -29.29295 -28.38882 -24.96590 -24.20343 -22.35248 -21.28039 -20.57196 -18.96569 -17.46548 -17.04713 -16.41189 -16.23414 -15.71608 -15.57401 -15.44801 -15.09128 -14.14010 -13.86418 -13.65643 -13.36880 -13.16862 -12.87593 -12.65434 -12.31769 -12.21949 -11.95354 -11.87233 -11.61889 -11.46753 -11.17253 -11.15207 -10.81530 -10.03114 -9.95333 -9.56737 -9.26853 -8.86010 -8.26360 -7.75565 -6.91050 -6.70049 -4.36445 0.68282 1.20525 2.60567 2.66064 2.87523 2.92952 3.01600 3.04281 3.16386 3.52934 3.81049 3.86261 3.92515 4.41982 4.52044 4.91031 5.05607 5.13137 5.35100 5.54266 5.73415 5.97678 6.01520 6.04903 6.18678 6.25959 6.54728 6.75211 6.83549 6.92620 7.06950 7.28564 7.41065 7.46817 7.53087 7.88414 8.03836 8.11740 8.21804 8.49066 8.77096 8.83638 10.09095 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.025596 B = 0.003797 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.672732 B = 7373.202387 C = 8082.566536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C 0.261 3.739 3 C 0.033 3.967 4 C -0.169 4.169 5 C 0.136 3.864 6 F -0.138 7.138 7 C -0.200 4.200 8 C 0.236 3.764 9 N -0.664 5.664 10 C 0.018 3.982 11 C -0.125 4.125 12 C -0.140 4.140 13 C 0.097 3.903 14 C -0.456 4.456 15 H 0.078 0.922 16 C 0.074 3.926 17 N -0.795 5.795 18 Si 0.910 3.090 19 H -0.263 1.263 20 H -0.278 1.278 21 H -0.265 1.265 22 C -0.202 4.202 23 C -0.120 4.120 24 C -0.128 4.128 25 H 0.137 0.863 26 H 0.138 0.862 27 H 0.402 0.598 28 H 0.092 0.908 29 H 0.123 0.877 30 H 0.282 0.718 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.890 -7.004 -7.987 11.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.090 5.090 2 C -0.055 4.055 3 C 0.029 3.971 4 C -0.192 4.192 5 C 0.116 3.884 6 F -0.116 7.116 7 C -0.224 4.224 8 C 0.131 3.869 9 N -0.283 5.283 10 C -0.076 4.076 11 C -0.145 4.145 12 C -0.160 4.160 13 C 0.094 3.906 14 C -0.486 4.486 15 H 0.096 0.904 16 C -0.144 4.144 17 N -0.420 5.420 18 Si 0.734 3.266 19 H -0.188 1.188 20 H -0.203 1.203 21 H -0.190 1.190 22 C -0.222 4.222 23 C -0.140 4.140 24 C -0.152 4.152 25 H 0.155 0.845 26 H 0.156 0.844 27 H 0.237 0.763 28 H 0.110 0.890 29 H 0.141 0.859 30 H 0.093 0.907 31 H 0.114 0.886 32 H 0.114 0.886 33 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 3.059 -6.715 -7.931 10.833 hybrid contribution 0.740 0.409 0.476 0.970 sum 3.798 -6.307 -7.455 10.478 Atomic orbital electron populations 1.81230 1.11973 1.07703 1.08067 1.25542 0.92497 0.93695 0.93730 1.15347 0.84177 0.97182 1.00431 1.20689 0.92240 1.01601 1.04655 1.16951 0.89191 0.87888 0.94393 1.91501 1.80216 1.62413 1.77517 1.20853 1.00882 0.95633 1.05072 1.17199 0.90352 0.88746 0.90557 1.41665 1.22365 1.40668 1.23600 1.17178 1.06232 0.95121 0.89038 1.20165 1.02473 0.92968 0.98923 1.20956 0.98161 1.01016 0.95820 1.17636 0.89642 0.90864 0.92428 1.19516 1.35769 0.91530 1.01757 0.90388 1.25907 0.92759 0.97322 0.98413 1.69823 1.35803 1.05347 1.31062 0.86330 0.80018 0.77906 0.82305 1.18800 1.20303 1.18972 1.20622 1.04748 0.98993 0.97846 1.20155 0.99969 0.97709 0.96167 1.21215 0.93157 0.99587 1.01280 0.84462 0.84424 0.76263 0.88977 0.85908 0.90728 0.88551 0.88618 0.83546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -6.71 18.54 41.84 0.78 -5.93 16 2 C 0.26 3.72 15.33 -22.47 -0.34 3.37 16 3 C 0.03 0.42 5.73 -106.97 -0.61 -0.19 16 4 C -0.17 -1.88 9.73 -39.06 -0.38 -2.26 16 5 C 0.14 1.55 7.28 -39.51 -0.29 1.26 16 6 F -0.14 -1.58 17.26 2.25 0.04 -1.54 16 7 C -0.20 -2.32 9.93 -39.22 -0.39 -2.71 16 8 C 0.24 3.22 5.87 -83.84 -0.49 2.73 16 9 N -0.66 -9.87 5.42 -8.34 -0.05 -9.91 16 10 C 0.02 0.34 6.10 -83.68 -0.51 -0.17 16 11 C -0.12 -2.57 9.86 -39.76 -0.39 -2.96 16 12 C -0.14 -3.31 8.62 -39.27 -0.34 -3.65 16 13 C 0.10 2.41 5.57 -106.79 -0.59 1.81 16 14 C -0.46 -11.45 9.04 -37.89 -0.34 -11.79 16 15 H 0.08 1.89 7.89 -52.49 -0.41 1.47 16 16 C 0.07 1.76 5.17 -17.34 -0.09 1.67 16 17 N -0.79 -19.51 10.90 55.54 0.61 -18.90 16 18 Si 0.91 17.90 29.59 -169.99 -5.03 12.87 16 19 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 20 H -0.28 -5.35 7.11 56.52 0.40 -4.94 16 21 H -0.27 -5.20 7.11 56.52 0.40 -4.79 16 22 C -0.20 -4.58 9.74 -39.27 -0.38 -4.96 16 23 C -0.12 -2.41 7.79 -39.77 -0.31 -2.72 16 24 C -0.13 -1.82 7.39 -38.93 -0.29 -2.11 16 25 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 26 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 27 H 0.40 4.97 8.87 -40.82 -0.36 4.61 16 28 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 29 H 0.12 3.03 6.16 -52.49 -0.32 2.71 16 30 H 0.28 6.34 8.30 -40.82 -0.34 6.00 16 31 H 0.10 2.09 8.06 -52.48 -0.42 1.67 16 32 H 0.10 1.76 6.22 -52.48 -0.33 1.43 16 33 H 0.15 2.38 6.59 -52.48 -0.35 2.03 16 LS Contribution 302.44 15.07 4.56 4.56 Total: -1.00 -25.61 302.44 -7.45 -33.06 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -2.60 Total: 8.49 kcal Atomic # 6 Polarization: -16.93 SS G_CDS: -5.75 Total: -22.68 kcal Atomic # 7 Polarization: -36.08 SS G_CDS: 1.34 Total: -34.75 kcal Atomic # 9 Polarization: -1.58 SS G_CDS: 0.04 Total: -1.54 kcal Atomic # 14 Polarization: 17.90 SS G_CDS: -5.03 Total: 12.87 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -25.61 -7.45 -33.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175685210.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.753 kcal (2) G-P(sol) polarization free energy of solvation -25.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds