Wall clock time and date at job start Tue Mar 31 2020 05:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38141 * 120.00994 * 2 1 4 4 C 1.38226 * 120.09511 * 180.25493 * 3 2 1 5 5 C 1.38532 * 120.11623 * 359.48480 * 4 3 2 6 6 F 1.35098 * 119.99389 * 180.25409 * 5 4 3 7 7 C 1.38317 * 120.01999 * 0.27903 * 5 4 3 8 8 C 1.38857 * 119.90421 * 359.97438 * 7 5 4 9 9 N 1.39885 * 120.05714 * 180.02562 * 8 7 5 10 10 C 1.34774 * 120.00107 * 312.62108 * 9 8 7 11 11 S 1.71191 * 120.00141 * 4.26912 * 10 9 8 12 12 N 1.34782 * 119.99840 * 184.26911 * 10 9 8 13 13 C 1.46500 * 119.99783 * 0.02562 * 12 10 9 14 14 C 1.46496 * 120.00028 * 179.97438 * 12 10 9 15 15 C 1.50705 * 109.46925 * 90.00335 * 14 12 10 16 16 H 1.07999 * 120.00008 * 0.02562 * 15 14 12 17 17 C 1.37880 * 120.00027 * 179.97438 * 15 14 12 18 18 N 1.31513 * 119.99582 * 0.02562 * 17 15 14 19 19 Si 1.86789 * 119.99783 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47715 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.47263 * 120.00225 * 19 17 15 22 22 H 1.48497 * 109.47282 * 239.99897 * 19 17 15 23 23 H 1.08996 * 109.47147 * 270.23563 * 1 2 3 24 24 H 1.08997 * 109.46885 * 30.23570 * 1 2 3 25 25 H 1.08999 * 109.46659 * 150.23164 * 1 2 3 26 26 H 1.07996 * 119.95428 * 0.02562 * 3 2 1 27 27 H 1.07994 * 119.94591 * 179.76700 * 4 3 2 28 28 H 1.08004 * 120.04712 * 179.97438 * 7 5 4 29 29 H 0.97008 * 119.99546 * 132.61964 * 9 8 7 30 30 H 1.09000 * 109.47701 * 89.99991 * 13 12 10 31 31 H 1.09004 * 109.46924 * 209.99766 * 13 12 10 32 32 H 1.08993 * 109.47450 * 329.99400 * 13 12 10 33 33 H 1.08998 * 109.47431 * 210.00546 * 14 12 10 34 34 H 1.09002 * 109.47027 * 330.00846 * 14 12 10 35 35 H 0.97006 * 119.99312 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1980 1.1962 0.0000 4 6 3.5802 1.1983 -0.0053 5 6 4.2771 0.0010 0.0001 6 9 5.6281 0.0060 0.0001 7 6 3.5902 -1.1995 0.0050 8 6 2.2016 -1.2026 0.0051 9 7 1.5037 -2.4149 0.0106 10 6 1.8524 -3.3971 -0.8438 11 16 3.2168 -3.2038 -1.8595 12 7 1.1268 -4.5316 -0.8986 13 6 -0.0412 -4.6968 -0.0299 14 6 1.5055 -5.5991 -1.8277 15 6 2.4625 -6.5426 -1.1457 16 1 2.7586 -6.3650 -0.1224 17 6 2.9592 -7.6331 -1.8278 18 7 2.5981 -7.8495 -3.0738 19 14 4.1459 -8.8020 -0.9827 20 1 4.3912 -8.3395 0.4070 21 1 3.5604 -10.1665 -0.9536 22 1 5.4292 -8.8300 -1.7293 23 1 -0.3633 0.0042 1.0276 24 1 -0.3633 0.8878 -0.5175 25 1 -0.3632 -0.8921 -0.5102 26 1 1.6574 2.1312 0.0004 27 1 4.1179 2.1348 -0.0091 28 1 4.1331 -2.1332 0.0088 29 1 0.7687 -2.5485 0.6295 30 1 -0.9287 -4.3205 -0.5386 31 1 -0.1756 -5.7535 0.2012 32 1 0.1116 -4.1394 0.8942 33 1 0.6142 -6.1456 -2.1360 34 1 1.9864 -5.1644 -2.7040 35 1 2.9478 -8.6165 -3.5537 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001195881237.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:11 Heat of formation + Delta-G solvation = -10.897978 kcal Electronic energy + Delta-G solvation = -19601.269903 eV Core-core repulsion = 16446.589593 eV Total energy + Delta-G solvation = -3154.680310 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.090 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.80384 -41.38099 -39.53687 -36.56643 -34.68780 -33.38506 -31.19524 -29.92210 -28.61241 -27.38123 -25.63386 -23.81788 -22.87011 -22.21208 -19.74020 -19.08669 -18.74519 -17.56260 -17.40725 -16.66569 -16.53659 -16.50046 -16.04695 -15.85624 -15.33130 -14.81998 -14.59266 -14.37308 -14.18244 -13.65903 -13.52426 -13.30424 -13.00418 -12.88125 -12.67227 -12.62860 -12.55871 -12.30017 -12.19998 -12.07468 -11.74908 -10.64719 -10.53884 -9.76424 -9.24995 -8.82993 -8.23156 -8.12606 -6.34012 -0.09577 0.27755 0.62203 0.98457 1.35024 1.40196 1.48391 1.62139 2.29788 2.41680 2.61667 3.10699 3.39563 3.84231 3.94173 3.96274 4.10928 4.21920 4.38159 4.45720 4.58608 4.76420 4.80730 4.84583 5.02855 5.06687 5.17690 5.21816 5.28346 5.30817 5.43871 5.59212 5.70662 5.81362 5.97304 6.04349 6.37150 6.70477 7.32710 8.85040 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.021753 B = 0.005110 C = 0.004428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.856413 B = 5478.265803 C = 6322.514221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.093 4.093 3 C -0.083 4.083 4 C -0.139 4.139 5 C 0.066 3.934 6 F -0.155 7.155 7 C -0.122 4.122 8 C 0.142 3.858 9 N -0.620 5.620 10 C 0.574 3.426 11 S -0.738 6.738 12 N -0.537 5.537 13 C 0.051 3.949 14 C 0.251 3.749 15 C -0.526 4.526 16 H 0.049 0.951 17 C 0.018 3.982 18 N -0.922 5.922 19 Si 0.961 3.039 20 H -0.271 1.271 21 H -0.268 1.268 22 H -0.288 1.288 23 H 0.098 0.902 24 H 0.094 0.906 25 H 0.056 0.944 26 H 0.179 0.821 27 H 0.161 0.839 28 H 0.118 0.882 29 H 0.424 0.576 30 H 0.097 0.903 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.040 0.960 34 H 0.039 0.961 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.167 17.472 11.636 23.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.096 4.096 3 C -0.102 4.102 4 C -0.158 4.158 5 C 0.045 3.955 6 F -0.133 7.133 7 C -0.146 4.146 8 C 0.048 3.952 9 N -0.252 5.252 10 C 0.212 3.788 11 S -0.606 6.606 12 N -0.239 5.239 13 C -0.093 4.093 14 C 0.131 3.869 15 C -0.565 4.565 16 H 0.067 0.933 17 C -0.182 4.182 18 N -0.562 5.562 19 Si 0.786 3.214 20 H -0.195 1.195 21 H -0.193 1.193 22 H -0.214 1.214 23 H 0.117 0.883 24 H 0.112 0.888 25 H 0.075 0.925 26 H 0.196 0.804 27 H 0.179 0.821 28 H 0.136 0.864 29 H 0.268 0.732 30 H 0.116 0.884 31 H 0.112 0.888 32 H 0.113 0.887 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.368 17.264 10.807 22.418 hybrid contribution 0.584 -1.497 0.580 1.708 sum -8.784 15.767 11.387 21.340 Atomic orbital electron populations 1.20848 0.87944 1.03980 1.04135 1.20183 0.98218 0.90481 1.00676 1.21077 0.92325 0.98313 0.98444 1.21461 0.95746 0.96545 1.02011 1.17691 0.76640 0.94777 1.06370 1.91442 1.30038 1.97467 1.94393 1.21310 0.94980 0.98225 1.00036 1.17042 0.89595 0.84265 1.04286 1.41972 1.35844 1.11544 1.35809 1.21628 0.88936 0.82579 0.85679 1.93430 1.24810 1.89604 1.52754 1.47633 1.25663 1.13360 1.37228 1.22442 0.86788 1.05834 0.94206 1.19476 0.95949 0.82768 0.88748 1.21348 1.27784 1.08614 0.98786 0.93279 1.25619 0.97785 0.99417 0.95357 1.70027 1.45421 1.29856 1.10860 0.85465 0.78606 0.78833 0.78448 1.19548 1.19283 1.21383 0.88339 0.88768 0.92530 0.80368 0.82105 0.86416 0.73241 0.88438 0.88800 0.88703 0.94179 0.94303 0.92460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.36 9.59 71.24 0.68 -0.67 16 2 C -0.09 -1.84 5.90 -19.73 -0.12 -1.96 16 3 C -0.08 -1.38 9.69 22.24 0.22 -1.16 16 4 C -0.14 -2.95 10.02 22.34 0.22 -2.73 16 5 C 0.07 2.04 7.30 22.36 0.16 2.20 16 6 F -0.15 -5.25 17.27 44.97 0.78 -4.48 16 7 C -0.12 -4.26 7.86 22.44 0.18 -4.09 16 8 C 0.14 4.06 5.85 38.16 0.22 4.28 16 9 N -0.62 -17.45 4.30 -190.02 -0.82 -18.27 16 10 C 0.57 22.66 7.56 179.05 1.35 24.01 16 11 S -0.74 -38.32 24.40 -56.49 -1.38 -39.70 16 12 N -0.54 -20.53 2.86 -739.21 -2.11 -22.64 16 13 C 0.05 1.20 10.24 127.77 1.31 2.51 16 14 C 0.25 12.63 4.92 85.64 0.42 13.05 16 15 C -0.53 -29.08 9.39 25.60 0.24 -28.84 16 16 H 0.05 2.73 7.81 -2.91 -0.02 2.71 16 17 C 0.02 1.02 5.46 84.66 0.46 1.48 16 18 N -0.92 -54.79 13.29 21.45 0.28 -54.50 16 19 Si 0.96 45.20 29.54 68.60 2.03 47.22 16 20 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 21 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 22 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 23 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 24 H 0.09 0.80 8.09 -2.39 -0.02 0.78 16 25 H 0.06 0.81 7.38 -2.39 -0.02 0.79 16 26 H 0.18 1.41 8.06 -2.91 -0.02 1.39 16 27 H 0.16 2.46 8.06 -2.91 -0.02 2.43 16 28 H 0.12 5.09 6.32 -4.61 -0.03 5.06 16 29 H 0.42 8.06 6.16 -92.70 -0.57 7.49 16 30 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.09 2.33 8.07 -2.38 -0.02 2.31 16 32 H 0.09 1.54 6.30 -2.39 -0.02 1.53 16 33 H 0.04 2.01 8.07 -2.39 -0.02 1.99 16 34 H 0.04 2.30 6.58 -2.39 -0.02 2.29 16 35 H 0.27 14.96 8.31 -92.70 -0.77 14.19 16 Total: -1.00 -79.52 312.23 4.67 -74.85 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: 0.54 Total: 9.42 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: 5.36 Total: 8.10 kcal Atomic # 7 Polarization: -92.77 SS G_CDS: -2.64 Total: -95.42 kcal Atomic # 9 Polarization: -5.25 SS G_CDS: 0.78 Total: -4.48 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.22 kcal Atomic # 16 Polarization: -38.32 SS G_CDS: -1.38 Total: -39.70 kcal Total: -79.52 4.67 -74.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195881237.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.952 kcal (2) G-P(sol) polarization free energy of solvation -79.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds