Wall clock time and date at job start Tue Mar 31 2020 05:26:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38132 * 120.01654 * 2 1 4 4 C 1.38225 * 120.10050 * 180.25308 * 3 2 1 5 5 C 1.38536 * 120.11399 * 359.79206 * 4 3 2 6 6 F 1.35106 * 119.98961 * 179.97438 * 5 4 3 7 7 C 1.38308 * 120.02144 * 359.95681 * 5 4 3 8 8 C 1.38858 * 119.90409 * 0.02562 * 7 5 4 9 9 N 1.39884 * 120.05793 * 179.97438 * 8 7 5 10 10 C 1.34779 * 120.00023 * 315.40236 * 9 8 7 11 11 S 1.71202 * 119.99574 * 354.39796 * 10 9 8 12 12 N 1.34773 * 119.99940 * 174.67471 * 10 9 8 13 13 C 1.46502 * 119.99559 * 179.72824 * 12 10 9 14 14 H 1.08996 * 109.47016 * 324.99744 * 13 12 10 15 15 C 1.53002 * 109.47292 * 85.00129 * 13 12 10 16 16 C 1.50703 * 109.46999 * 204.99818 * 13 12 10 17 17 H 1.08007 * 119.99595 * 0.02562 * 16 13 12 18 18 C 1.37873 * 120.00357 * 180.02562 * 16 13 12 19 19 N 1.31514 * 119.99633 * 359.97438 * 18 16 13 20 20 Si 1.86793 * 120.00330 * 180.02562 * 18 16 13 21 21 H 1.48508 * 109.47296 * 59.99538 * 20 18 16 22 22 H 1.48497 * 109.47635 * 179.97438 * 20 18 16 23 23 H 1.48507 * 109.47251 * 299.99972 * 20 18 16 24 24 H 1.09001 * 109.47036 * 270.22983 * 1 2 3 25 25 H 1.09001 * 109.46874 * 30.22892 * 1 2 3 26 26 H 1.09000 * 109.47535 * 150.23421 * 1 2 3 27 27 H 1.08001 * 119.94920 * 0.02562 * 3 2 1 28 28 H 1.08003 * 119.94636 * 179.76798 * 4 3 2 29 29 H 1.08004 * 120.04588 * 180.02562 * 7 5 4 30 30 H 0.97000 * 120.00432 * 135.40371 * 9 8 7 31 31 H 0.97000 * 120.00246 * 359.72509 * 12 10 9 32 32 H 1.09006 * 109.46531 * 299.99311 * 15 13 12 33 33 H 1.08996 * 109.47404 * 59.99853 * 15 13 12 34 34 H 1.09004 * 109.46806 * 179.97438 * 15 13 12 35 35 H 0.97003 * 119.99906 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1961 0.0000 4 6 3.5802 1.1981 -0.0053 5 6 4.2770 0.0007 -0.0062 6 9 5.6281 0.0057 -0.0119 7 6 3.5901 -1.1997 -0.0010 8 6 2.2016 -1.2027 0.0047 9 7 1.5035 -2.4149 0.0094 10 6 1.8842 -3.4149 -0.8101 11 16 3.1282 -3.1550 -1.9571 12 7 1.2816 -4.6178 -0.7304 13 6 1.6913 -5.7030 -1.6253 14 1 1.9625 -5.2899 -2.5968 15 6 2.8964 -6.4307 -1.0260 16 6 0.5507 -6.6737 -1.7927 17 1 -0.3858 -6.4993 -1.2838 18 6 0.7028 -7.7842 -2.5956 19 7 1.8430 -7.9961 -3.2156 20 14 -0.7112 -8.9869 -2.8037 21 1 -1.8804 -8.2805 -3.3861 22 1 -0.2960 -10.0870 -3.7106 23 1 -1.0817 -9.5492 -1.4801 24 1 -0.3633 0.0041 1.0277 25 1 -0.3633 0.8879 -0.5174 26 1 -0.3634 -0.8921 -0.5102 27 1 1.6574 2.1311 0.0004 28 1 4.1180 2.1347 -0.0091 29 1 4.1330 -2.1334 -0.0013 30 1 0.7455 -2.5359 0.6025 31 1 0.5767 -4.7651 -0.0805 32 1 3.7214 -5.7286 -0.9050 33 1 2.6253 -6.8438 -0.0545 34 1 3.2009 -7.2384 -1.6917 35 1 1.9499 -8.7772 -3.7808 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001195933216.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:18 Heat of formation + Delta-G solvation = -5.520743 kcal Electronic energy + Delta-G solvation = -19392.512193 eV Core-core repulsion = 16238.065057 eV Total energy + Delta-G solvation = -3154.447136 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.090 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.68065 -40.11312 -37.91384 -35.41525 -32.92980 -32.44173 -30.25312 -28.69093 -26.54975 -25.48957 -24.20533 -22.28979 -21.76406 -20.91827 -18.52049 -18.29510 -16.48229 -16.23517 -15.85882 -15.58764 -15.38660 -14.94367 -14.82316 -14.26682 -13.81830 -13.63982 -13.48609 -13.34806 -12.65963 -12.24829 -12.03297 -11.75857 -11.63990 -11.30012 -11.18749 -11.04798 -10.82816 -10.59906 -10.45180 -10.34869 -9.47674 -9.23264 -8.68071 -8.60595 -8.14632 -7.15106 -6.53871 -6.24452 -4.36697 1.01729 1.27566 1.99847 2.45953 3.01555 3.17322 3.23919 3.24385 3.60223 4.02002 4.27752 4.42474 4.69097 4.82980 5.00693 5.07754 5.14874 5.38926 5.42365 5.60651 5.77081 5.99983 6.09386 6.24199 6.28309 6.47606 6.55170 6.79056 6.89831 6.96203 7.03641 7.33839 7.44613 7.51622 7.76580 8.00491 8.16938 8.64464 9.29444 10.80613 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.029502 B = 0.004237 C = 0.003841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.844367 B = 6607.010679 C = 7287.518053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.109 4.109 3 C -0.090 4.090 4 C -0.154 4.154 5 C 0.099 3.901 6 F -0.139 7.139 7 C -0.103 4.103 8 C 0.179 3.821 9 N -0.652 5.652 10 C 0.549 3.451 11 S -0.639 6.639 12 N -0.638 5.638 13 C 0.258 3.742 14 H 0.084 0.916 15 C -0.146 4.146 16 C -0.548 4.548 17 H 0.059 0.941 18 C 0.073 3.927 19 N -0.873 5.873 20 Si 0.905 3.095 21 H -0.276 1.276 22 H -0.283 1.283 23 H -0.276 1.276 24 H 0.069 0.931 25 H 0.072 0.928 26 H 0.065 0.935 27 H 0.133 0.867 28 H 0.133 0.867 29 H 0.153 0.847 30 H 0.403 0.597 31 H 0.389 0.611 32 H 0.031 0.969 33 H 0.022 0.978 34 H 0.097 0.903 35 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.768 14.832 9.953 18.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.112 4.112 3 C -0.109 4.109 4 C -0.174 4.174 5 C 0.078 3.922 6 F -0.118 7.118 7 C -0.126 4.126 8 C 0.084 3.916 9 N -0.282 5.282 10 C 0.189 3.811 11 S -0.510 6.510 12 N -0.258 5.258 13 C 0.158 3.842 14 H 0.102 0.898 15 C -0.205 4.205 16 C -0.587 4.587 17 H 0.077 0.923 18 C -0.132 4.132 19 N -0.509 5.509 20 Si 0.732 3.268 21 H -0.201 1.201 22 H -0.209 1.209 23 H -0.202 1.202 24 H 0.088 0.912 25 H 0.091 0.909 26 H 0.084 0.916 27 H 0.151 0.849 28 H 0.151 0.849 29 H 0.170 0.830 30 H 0.241 0.759 31 H 0.224 0.776 32 H 0.050 0.950 33 H 0.042 0.958 34 H 0.116 0.884 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.748 14.607 8.889 17.188 hybrid contribution -1.836 -1.040 0.935 2.308 sum -3.584 13.567 9.824 17.130 Atomic orbital electron populations 1.20724 0.90742 1.03412 1.02130 1.19731 0.96316 0.91604 1.03567 1.20537 0.92927 0.97054 1.00370 1.21065 0.94836 0.96965 1.04539 1.17320 0.76964 0.93815 1.04140 1.91493 1.28881 1.97370 1.94033 1.21262 0.93540 0.98810 0.99021 1.16782 0.90115 0.83491 1.01194 1.42182 1.33648 1.11797 1.40558 1.22464 0.89751 0.82021 0.86867 1.93290 1.29799 1.89646 1.38270 1.46234 1.34148 1.09213 1.36199 1.19516 0.93943 0.81210 0.89558 0.89844 1.22051 0.97250 1.01357 0.99829 1.21052 0.98273 1.08104 1.31244 0.92253 1.24825 0.96160 0.97444 0.94802 1.69892 1.23702 1.28265 1.29069 0.86461 0.81889 0.80326 0.78160 1.20109 1.20874 1.20157 0.91201 0.90920 0.91592 0.84939 0.84943 0.82974 0.75902 0.77594 0.95019 0.95850 0.88438 0.92173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.99 9.56 36.00 0.34 -0.64 16 2 C -0.11 -1.24 5.90 -104.42 -0.62 -1.86 16 3 C -0.09 -0.92 9.69 -39.62 -0.38 -1.30 16 4 C -0.15 -1.76 10.02 -39.48 -0.40 -2.16 16 5 C 0.10 1.41 7.30 -39.45 -0.29 1.13 16 6 F -0.14 -2.11 17.27 2.25 0.04 -2.07 16 7 C -0.10 -1.62 7.86 -39.33 -0.31 -1.93 16 8 C 0.18 2.51 5.80 -83.71 -0.49 2.02 16 9 N -0.65 -9.04 4.49 -11.41 -0.05 -9.09 16 10 C 0.55 10.11 7.71 -86.92 -0.67 9.44 16 11 S -0.64 -14.58 24.12 -107.50 -2.59 -17.17 16 12 N -0.64 -12.03 5.07 -56.65 -0.29 -12.32 16 13 C 0.26 6.14 2.32 -69.08 -0.16 5.98 16 14 H 0.08 2.32 6.82 -51.93 -0.35 1.96 16 15 C -0.15 -3.46 9.21 37.16 0.34 -3.12 16 16 C -0.55 -13.75 8.73 -34.44 -0.30 -14.05 16 17 H 0.06 1.41 7.74 -52.48 -0.41 1.00 16 18 C 0.07 1.88 5.30 -17.82 -0.09 1.78 16 19 N -0.87 -23.79 11.32 55.43 0.63 -23.16 16 20 Si 0.90 19.90 29.54 -169.99 -5.02 14.88 16 21 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 22 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 23 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 24 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 25 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 26 H 0.07 0.64 7.34 -51.93 -0.38 0.26 16 27 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 28 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 29 H 0.15 2.72 6.56 -52.48 -0.34 2.37 16 30 H 0.40 4.13 8.36 -40.82 -0.34 3.79 16 31 H 0.39 6.09 8.56 -40.82 -0.35 5.74 16 32 H 0.03 0.73 7.48 -51.93 -0.39 0.34 16 33 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.10 2.55 6.07 -51.93 -0.32 2.24 16 35 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 310.25 15.07 4.68 4.68 Total: -1.00 -30.33 310.25 -9.75 -40.08 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -4.13 Total: 8.87 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: -3.02 Total: -4.71 kcal Atomic # 7 Polarization: -44.85 SS G_CDS: 0.29 Total: -44.56 kcal Atomic # 9 Polarization: -2.11 SS G_CDS: 0.04 Total: -2.07 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.88 kcal Atomic # 16 Polarization: -14.58 SS G_CDS: -2.59 Total: -17.17 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.33 -9.75 -40.08 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195933216.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.563 kcal (2) G-P(sol) polarization free energy of solvation -30.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds