Wall clock time and date at job start Tue Mar 31 2020 05:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38138 * 120.02187 * 2 1 4 4 C 1.38455 * 120.04540 * 179.97438 * 3 2 1 5 5 F 1.35095 * 119.94987 * 180.02562 * 4 3 2 6 6 C 1.38490 * 120.09139 * 0.02562 * 4 3 2 7 7 C 1.38091 * 120.04710 * 359.70936 * 6 4 3 8 8 C 1.38833 * 120.02603 * 179.97438 * 2 1 3 9 9 N 1.40003 * 120.04438 * 0.02562 * 8 2 1 10 10 C 1.34785 * 120.00138 * 135.88183 * 9 8 2 11 11 S 1.71198 * 119.99749 * 354.52561 * 10 9 8 12 12 N 1.34778 * 119.99744 * 174.25427 * 10 9 8 13 13 C 1.46497 * 119.99548 * 180.27480 * 12 10 9 14 14 C 1.52999 * 109.46998 * 180.02562 * 13 12 10 15 15 C 1.50697 * 109.47278 * 179.97438 * 14 13 12 16 16 H 1.08004 * 120.00119 * 359.97438 * 15 14 13 17 17 C 1.37875 * 120.00118 * 179.97438 * 15 14 13 18 18 N 1.31517 * 120.00126 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00218 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47082 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47325 * 120.00133 * 19 17 15 22 22 H 1.48504 * 109.47311 * 240.00140 * 19 17 15 23 23 H 1.08996 * 109.47039 * 270.01877 * 1 2 3 24 24 H 1.09000 * 109.47545 * 30.02445 * 1 2 3 25 25 H 1.09007 * 109.47135 * 150.02145 * 1 2 3 26 26 H 1.08002 * 119.97506 * 359.95938 * 3 2 1 27 27 H 1.08000 * 119.97407 * 180.02562 * 6 4 3 28 28 H 1.08002 * 120.02336 * 180.27674 * 7 6 4 29 29 H 0.97003 * 119.99830 * 315.87782 * 9 8 2 30 30 H 0.96996 * 119.99924 * 0.26944 * 12 10 9 31 31 H 1.08999 * 109.47185 * 299.99217 * 13 12 10 32 32 H 1.08994 * 109.47395 * 59.99869 * 13 12 10 33 33 H 1.09003 * 109.47117 * 299.99656 * 14 13 12 34 34 H 1.09002 * 109.47462 * 59.99391 * 14 13 12 35 35 H 0.96998 * 120.00248 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1960 0.0000 4 6 3.5827 1.1966 0.0005 5 9 4.2566 2.3674 0.0011 6 6 4.2775 -0.0013 0.0005 7 6 3.5905 -1.1992 0.0061 8 6 2.2017 -1.2020 0.0005 9 7 1.5032 -2.4153 0.0005 10 6 1.8934 -3.4177 -0.8117 11 16 3.1530 -3.1619 -1.9425 12 7 1.2957 -4.6229 -0.7297 13 6 1.7241 -5.7141 -1.6084 14 6 0.8907 -6.9629 -1.3140 15 6 1.3308 -8.0853 -2.2182 16 1 2.1252 -7.9239 -2.9319 17 6 0.7193 -9.3182 -2.1345 18 7 -0.2484 -9.5146 -1.2658 19 14 1.2654 -10.7096 -3.2549 20 1 2.3638 -10.2349 -4.1343 21 1 1.7476 -11.8477 -2.4318 22 1 0.1192 -11.1525 -4.0888 23 1 -0.3633 0.0003 1.0276 24 1 -0.3634 0.8897 -0.5142 25 1 -0.3634 -0.8902 -0.5135 26 1 1.6581 2.1313 -0.0007 27 1 5.3575 0.0013 0.0014 28 1 4.1327 -2.1332 0.0106 29 1 0.7383 -2.5346 0.5851 30 1 0.5821 -4.7678 -0.0889 31 1 1.5823 -5.4201 -2.6483 32 1 2.7778 -5.9302 -1.4322 33 1 1.0319 -7.2572 -0.2740 34 1 -0.1630 -6.7466 -1.4904 35 1 -0.6788 -10.3819 -1.2072 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001196143714.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:17 Heat of formation + Delta-G solvation = -13.360817 kcal Electronic energy + Delta-G solvation = -18710.841998 eV Core-core repulsion = 15556.054891 eV Total energy + Delta-G solvation = -3154.787107 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.090 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.98060 -40.34761 -38.14517 -35.42261 -33.23225 -32.96051 -30.46470 -29.05354 -27.18720 -25.26491 -23.90919 -22.50606 -21.90347 -21.25613 -18.64691 -17.97879 -17.25267 -16.66381 -16.43932 -15.69764 -15.60382 -14.95779 -14.71359 -14.36336 -14.20368 -14.06002 -13.68669 -13.48598 -13.10460 -12.71733 -12.40532 -12.20285 -11.95271 -11.42309 -11.31165 -11.09512 -10.96202 -10.70587 -10.58812 -9.81654 -9.51409 -9.43258 -9.10483 -8.55785 -8.32751 -7.61113 -6.99120 -6.20988 -4.24372 0.77660 1.11572 1.63423 2.09186 2.67210 3.23194 3.31343 3.36853 3.43026 3.63750 4.10361 4.34336 4.51708 4.58362 4.94440 5.03955 5.17094 5.21010 5.25297 5.30146 5.60832 5.77911 5.84570 5.96899 6.10507 6.12697 6.13512 6.19391 6.52581 6.62043 6.67672 7.00423 7.33290 7.38129 7.41261 7.77354 8.12635 8.81639 9.41783 10.90678 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.040626 B = 0.003082 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.052469 B = 9082.913060 C = 9562.570329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.066 4.066 3 C -0.152 4.152 4 C 0.100 3.900 5 F -0.142 7.142 6 C -0.151 4.151 7 C -0.038 4.038 8 C 0.132 3.868 9 N -0.644 5.644 10 C 0.551 3.449 11 S -0.634 6.634 12 N -0.657 5.657 13 C 0.121 3.879 14 C 0.011 3.989 15 C -0.521 4.521 16 H 0.064 0.936 17 C 0.060 3.940 18 N -0.895 5.895 19 Si 0.899 3.101 20 H -0.269 1.269 21 H -0.283 1.283 22 H -0.283 1.283 23 H 0.074 0.926 24 H 0.075 0.925 25 H 0.067 0.933 26 H 0.136 0.864 27 H 0.138 0.862 28 H 0.151 0.849 29 H 0.405 0.595 30 H 0.397 0.603 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.023 0.977 34 H 0.022 0.978 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.881 19.261 7.302 20.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.070 4.070 3 C -0.172 4.172 4 C 0.080 3.920 5 F -0.121 7.121 6 C -0.171 4.171 7 C -0.060 4.060 8 C 0.038 3.962 9 N -0.272 5.272 10 C 0.192 3.808 11 S -0.505 6.505 12 N -0.280 5.280 13 C -0.001 4.001 14 C -0.026 4.026 15 C -0.560 4.560 16 H 0.082 0.918 17 C -0.142 4.142 18 N -0.533 5.533 19 Si 0.726 3.274 20 H -0.194 1.194 21 H -0.209 1.209 22 H -0.209 1.209 23 H 0.093 0.907 24 H 0.094 0.906 25 H 0.086 0.914 26 H 0.154 0.846 27 H 0.156 0.844 28 H 0.168 0.832 29 H 0.243 0.757 30 H 0.234 0.766 31 H 0.099 0.901 32 H 0.100 0.900 33 H 0.041 0.959 34 H 0.041 0.959 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.664 19.121 6.471 20.255 hybrid contribution -1.087 -0.907 0.513 1.506 sum 0.577 18.214 6.984 19.515 Atomic orbital electron populations 1.20780 0.90372 1.03652 1.02562 1.19475 0.96243 0.90857 1.00380 1.20673 0.92129 0.98395 1.06035 1.17687 0.90060 0.81241 1.02979 1.91484 1.80454 1.46175 1.93951 1.20930 1.00985 0.90396 1.04840 1.21182 0.92395 0.99122 0.93309 1.17155 0.91120 0.83130 1.04801 1.42147 1.32856 1.11588 1.40619 1.22436 0.89785 0.82000 0.86616 1.93388 1.28462 1.89766 1.38920 1.45791 1.35281 1.08924 1.38039 1.22361 1.00882 0.84033 0.92782 1.19395 0.95044 0.90053 0.98122 1.21012 1.19774 0.95155 1.20043 0.91755 1.24995 0.94770 0.98864 0.95596 1.69953 1.24098 1.23893 1.35381 0.86414 0.78755 0.81685 0.80522 1.19353 1.20876 1.20876 0.90713 0.90639 0.91373 0.84584 0.84373 0.83188 0.75690 0.76642 0.90117 0.90042 0.95911 0.95941 0.92778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.85 9.55 36.00 0.34 -0.50 16 2 C -0.07 -0.66 5.90 -104.44 -0.62 -1.27 16 3 C -0.15 -1.50 9.67 -39.54 -0.38 -1.88 16 4 C 0.10 1.11 7.30 -39.41 -0.29 0.83 16 5 F -0.14 -1.63 17.26 2.25 0.04 -1.59 16 6 C -0.15 -1.71 10.02 -39.54 -0.40 -2.11 16 7 C -0.04 -0.47 7.88 -39.40 -0.31 -0.78 16 8 C 0.13 1.53 5.82 -83.67 -0.49 1.05 16 9 N -0.64 -7.13 4.51 -11.38 -0.05 -7.18 16 10 C 0.55 8.18 7.74 -86.91 -0.67 7.50 16 11 S -0.63 -12.00 25.28 -107.50 -2.72 -14.72 16 12 N -0.66 -9.77 5.56 -62.03 -0.34 -10.12 16 13 C 0.12 2.30 5.07 -4.04 -0.02 2.28 16 14 C 0.01 0.26 5.09 -27.88 -0.14 0.12 16 15 C -0.52 -13.76 9.11 -34.44 -0.31 -14.07 16 16 H 0.06 1.68 7.74 -52.48 -0.41 1.27 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.89 -25.18 13.29 55.43 0.74 -24.44 16 19 Si 0.90 20.80 29.54 -169.99 -5.02 15.77 16 20 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 25 H 0.07 0.53 7.33 -51.93 -0.38 0.15 16 26 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 27 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 28 H 0.15 2.08 6.53 -52.48 -0.34 1.74 16 29 H 0.40 3.16 8.32 -40.82 -0.34 2.82 16 30 H 0.40 4.84 8.49 -40.82 -0.35 4.50 16 31 H 0.08 1.65 7.99 -51.93 -0.42 1.24 16 32 H 0.08 1.65 7.99 -51.93 -0.41 1.23 16 33 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 316.69 15.07 4.77 4.77 Total: -1.00 -31.04 316.69 -10.28 -41.32 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -4.31 Total: 3.51 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: -3.38 Total: -7.32 kcal Atomic # 7 Polarization: -42.08 SS G_CDS: 0.34 Total: -41.74 kcal Atomic # 9 Polarization: -1.63 SS G_CDS: 0.04 Total: -1.59 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.77 kcal Atomic # 16 Polarization: -12.00 SS G_CDS: -2.72 Total: -14.72 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -31.04 -10.28 -41.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196143714.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.963 kcal (2) G-P(sol) polarization free energy of solvation -31.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds