Wall clock time and date at job start Tue Mar 31 2020 05:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38144 * 120.02072 * 2 1 4 4 C 1.38446 * 120.04548 * 179.97438 * 3 2 1 5 5 F 1.35100 * 119.95438 * 179.97438 * 4 3 2 6 6 C 1.38497 * 120.09006 * 359.70550 * 4 3 2 7 7 C 1.38087 * 120.04665 * 0.55662 * 6 4 3 8 8 C 1.38824 * 120.02632 * 179.97438 * 2 1 3 9 9 N 1.40008 * 120.04631 * 359.97438 * 8 2 1 10 10 C 1.34780 * 120.00477 * 132.65542 * 9 8 2 11 11 S 1.71203 * 119.99674 * 4.31135 * 10 9 8 12 12 N 1.34772 * 120.00072 * 184.31084 * 10 9 8 13 13 C 1.46500 * 119.99647 * 179.97438 * 12 10 9 14 14 H 1.09000 * 109.47571 * 324.99781 * 13 12 10 15 15 C 1.52997 * 109.47349 * 85.00247 * 13 12 10 16 16 C 1.50701 * 109.47064 * 205.00235 * 13 12 10 17 17 H 1.08003 * 119.99744 * 359.97438 * 16 13 12 18 18 C 1.37878 * 120.00247 * 179.97438 * 16 13 12 19 19 N 1.31521 * 119.99801 * 359.97438 * 18 16 13 20 20 Si 1.86794 * 120.00180 * 179.97438 * 18 16 13 21 21 H 1.48501 * 109.46919 * 90.00164 * 20 18 16 22 22 H 1.48496 * 109.47543 * 210.00133 * 20 18 16 23 23 H 1.48501 * 109.47430 * 330.00371 * 20 18 16 24 24 H 1.09000 * 109.46642 * 270.01418 * 1 2 3 25 25 H 1.09003 * 109.46961 * 30.01639 * 1 2 3 26 26 H 1.09001 * 109.46806 * 150.01907 * 1 2 3 27 27 H 1.07999 * 119.97507 * 359.97438 * 3 2 1 28 28 H 1.08000 * 119.97293 * 180.27179 * 6 4 3 29 29 H 1.08007 * 120.02370 * 179.74868 * 7 6 4 30 30 H 0.97004 * 119.99906 * 312.65047 * 9 8 2 31 31 H 0.96998 * 120.00298 * 359.97438 * 12 10 9 32 32 H 1.09005 * 109.47016 * 299.99749 * 15 13 12 33 33 H 1.08997 * 109.47444 * 59.99724 * 15 13 12 34 34 H 1.09003 * 109.47164 * 180.02562 * 15 13 12 35 35 H 0.96995 * 119.99667 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1961 0.0000 4 6 3.5827 1.1967 0.0005 5 9 4.2567 2.3675 0.0000 6 6 4.2775 -0.0013 0.0072 7 6 3.5905 -1.1991 0.0018 8 6 2.2017 -1.2019 0.0005 9 7 1.5032 -2.4153 0.0016 10 6 1.8520 -3.3946 -0.8562 11 16 3.2174 -3.1980 -1.8703 12 7 1.1260 -4.5285 -0.9158 13 6 1.5049 -5.5926 -1.8487 14 1 1.9054 -5.1505 -2.7610 15 6 2.5695 -6.4818 -1.2030 16 6 0.2924 -6.4227 -2.1831 17 1 -0.6646 -6.1820 -1.7442 18 6 0.4048 -7.4896 -3.0493 19 7 1.5702 -7.7824 -3.5841 20 14 -1.0979 -8.5189 -3.4632 21 1 -1.7786 -7.9454 -4.6519 22 1 -0.6777 -9.9124 -3.7579 23 1 -2.0324 -8.5173 -2.3091 24 1 -0.3632 0.0003 1.0277 25 1 -0.3633 0.8899 -0.5141 26 1 -0.3633 -0.8902 -0.5135 27 1 1.6581 2.1314 -0.0004 28 1 5.3575 0.0014 0.0121 29 1 4.1328 -2.1332 0.0029 30 1 0.7682 -2.5513 0.6199 31 1 0.3527 -4.6400 -0.3410 32 1 3.4465 -5.8814 -0.9612 33 1 2.1691 -6.9240 -0.2907 34 1 2.8517 -7.2733 -1.8973 35 1 1.6491 -8.5327 -4.1937 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001196146955.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:20 Heat of formation + Delta-G solvation = -6.033133 kcal Electronic energy + Delta-G solvation = -19294.388338 eV Core-core repulsion = 16139.918983 eV Total energy + Delta-G solvation = -3154.469354 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.090 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.83691 -40.09582 -37.89171 -35.33443 -32.98624 -32.69459 -29.93256 -28.53217 -26.93318 -25.49042 -24.11052 -22.14574 -21.87334 -20.92264 -18.50196 -17.94338 -17.08394 -16.46894 -16.02105 -15.59398 -15.52812 -14.90545 -14.25621 -14.08488 -13.82301 -13.54665 -13.50548 -13.23736 -12.70682 -12.66856 -12.09238 -11.99953 -11.66301 -11.19813 -11.16630 -11.00644 -10.80230 -10.61401 -10.42500 -10.36018 -9.33258 -9.19460 -8.91644 -8.61941 -8.08921 -7.18542 -6.51789 -6.25429 -4.37377 1.01931 1.30743 1.97441 2.45889 3.04115 3.16385 3.23792 3.24472 3.61024 4.04909 4.26461 4.28242 4.69698 4.76781 5.07028 5.11035 5.21929 5.39208 5.44122 5.48292 5.79743 5.99724 6.12360 6.25905 6.36339 6.47434 6.56418 6.78457 6.88558 6.95374 7.03383 7.35329 7.44743 7.51492 7.75984 7.99745 8.16691 8.64097 9.28821 10.79700 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.034194 B = 0.003923 C = 0.003663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.655778 B = 7135.957038 C = 7641.798191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.067 4.067 3 C -0.157 4.157 4 C 0.099 3.901 5 F -0.144 7.144 6 C -0.156 4.156 7 C -0.033 4.033 8 C 0.132 3.868 9 N -0.651 5.651 10 C 0.552 3.448 11 S -0.643 6.643 12 N -0.639 5.639 13 C 0.258 3.742 14 H 0.084 0.916 15 C -0.146 4.146 16 C -0.547 4.547 17 H 0.060 0.940 18 C 0.072 3.928 19 N -0.873 5.873 20 Si 0.904 3.096 21 H -0.278 1.278 22 H -0.283 1.283 23 H -0.274 1.274 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.068 0.932 27 H 0.134 0.866 28 H 0.137 0.863 29 H 0.157 0.843 30 H 0.402 0.598 31 H 0.389 0.611 32 H 0.031 0.969 33 H 0.022 0.978 34 H 0.097 0.903 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.874 13.230 10.431 16.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.071 4.071 3 C -0.177 4.177 4 C 0.079 3.921 5 F -0.123 7.123 6 C -0.177 4.177 7 C -0.056 4.056 8 C 0.037 3.963 9 N -0.280 5.280 10 C 0.191 3.809 11 S -0.513 6.513 12 N -0.259 5.259 13 C 0.158 3.842 14 H 0.101 0.899 15 C -0.205 4.205 16 C -0.586 4.586 17 H 0.078 0.922 18 C -0.133 4.133 19 N -0.509 5.509 20 Si 0.731 3.269 21 H -0.204 1.204 22 H -0.208 1.208 23 H -0.199 1.199 24 H 0.091 0.909 25 H 0.092 0.908 26 H 0.087 0.913 27 H 0.152 0.848 28 H 0.154 0.846 29 H 0.174 0.826 30 H 0.239 0.761 31 H 0.224 0.776 32 H 0.050 0.950 33 H 0.041 0.959 34 H 0.115 0.885 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.823 13.016 9.432 16.095 hybrid contribution -2.117 -0.636 0.712 2.322 sum -2.940 12.380 10.144 16.273 Atomic orbital electron populations 1.20765 0.90543 1.03567 1.02371 1.19510 0.96165 0.90995 1.00391 1.20627 0.92109 0.98299 1.06679 1.17696 0.90060 0.81186 1.03142 1.91473 1.80492 1.46292 1.94015 1.20945 1.00888 0.90460 1.05406 1.21396 0.92638 0.99239 0.92345 1.17170 0.91120 0.83200 1.04770 1.42132 1.36002 1.12782 1.37093 1.22425 0.91075 0.81844 0.85585 1.93201 1.20170 1.88846 1.49060 1.46206 1.26368 1.14720 1.38647 1.19511 0.94959 0.81842 0.87927 0.89856 1.22051 0.97364 1.01090 1.00005 1.21089 0.93960 1.14118 1.29421 0.92204 1.24829 0.96441 0.96826 0.95155 1.69902 1.23003 1.28553 1.29485 0.86404 0.82191 0.79435 0.78822 1.20385 1.20850 1.19920 0.90901 0.90824 0.91337 0.84807 0.84553 0.82604 0.76064 0.77602 0.95022 0.95859 0.88479 0.92239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.04 9.59 36.01 0.35 -0.69 16 2 C -0.07 -0.79 5.90 -104.44 -0.62 -1.40 16 3 C -0.16 -1.80 9.67 -39.54 -0.38 -2.18 16 4 C 0.10 1.26 7.30 -39.41 -0.29 0.97 16 5 F -0.14 -1.85 17.26 2.25 0.04 -1.81 16 6 C -0.16 -2.04 10.02 -39.54 -0.40 -2.43 16 7 C -0.03 -0.48 7.88 -39.40 -0.31 -0.79 16 8 C 0.13 1.80 5.85 -83.67 -0.49 1.31 16 9 N -0.65 -8.78 4.43 -11.39 -0.05 -8.83 16 10 C 0.55 9.91 7.81 -86.92 -0.68 9.23 16 11 S -0.64 -14.19 23.82 -107.50 -2.56 -16.75 16 12 N -0.64 -11.86 5.07 -56.65 -0.29 -12.15 16 13 C 0.26 6.07 2.32 -69.08 -0.16 5.91 16 14 H 0.08 2.29 6.82 -51.93 -0.35 1.94 16 15 C -0.15 -3.41 9.21 37.16 0.34 -3.07 16 16 C -0.55 -13.65 8.73 -34.44 -0.30 -13.95 16 17 H 0.06 1.42 7.74 -52.48 -0.41 1.01 16 18 C 0.07 1.86 5.30 -17.82 -0.09 1.77 16 19 N -0.87 -23.63 11.32 55.43 0.63 -23.00 16 20 Si 0.90 19.82 29.54 -169.99 -5.02 14.80 16 21 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 22 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 23 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 24 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 26 H 0.07 0.67 7.38 -51.93 -0.38 0.29 16 27 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 28 H 0.14 1.56 8.06 -52.49 -0.42 1.13 16 29 H 0.16 2.51 6.32 -49.88 -0.32 2.20 16 30 H 0.40 4.03 8.48 -40.82 -0.35 3.68 16 31 H 0.39 6.01 8.56 -40.82 -0.35 5.66 16 32 H 0.03 0.72 7.48 -51.93 -0.39 0.33 16 33 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.10 2.51 6.07 -51.93 -0.32 2.20 16 35 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 309.99 15.07 4.67 4.67 Total: -1.00 -29.56 309.99 -9.71 -39.27 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -4.10 Total: 9.14 kcal Atomic # 6 Polarization: -2.31 SS G_CDS: -3.03 Total: -5.34 kcal Atomic # 7 Polarization: -44.27 SS G_CDS: 0.29 Total: -43.98 kcal Atomic # 9 Polarization: -1.85 SS G_CDS: 0.04 Total: -1.81 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.80 kcal Atomic # 16 Polarization: -14.19 SS G_CDS: -2.56 Total: -16.75 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -29.56 -9.71 -39.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196146955.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.236 kcal (2) G-P(sol) polarization free energy of solvation -29.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds