Wall clock time and date at job start Tue Mar 31 2020 05:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38144 * 120.02072 * 2 1 4 4 C 1.38446 * 120.04548 * 179.97438 * 3 2 1 5 5 F 1.35100 * 119.95438 * 179.97438 * 4 3 2 6 6 C 1.38497 * 120.09006 * 359.70550 * 4 3 2 7 7 C 1.38087 * 120.04665 * 0.55662 * 6 4 3 8 8 C 1.38824 * 120.02632 * 179.97438 * 2 1 3 9 9 N 1.40008 * 120.04631 * 359.97438 * 8 2 1 10 10 C 1.34780 * 120.00477 * 132.65542 * 9 8 2 11 11 S 1.71203 * 119.99674 * 4.31135 * 10 9 8 12 12 N 1.34772 * 120.00072 * 184.31084 * 10 9 8 13 13 C 1.46500 * 119.99647 * 179.97438 * 12 10 9 14 14 H 1.09000 * 109.47571 * 324.99781 * 13 12 10 15 15 C 1.52997 * 109.47349 * 85.00247 * 13 12 10 16 16 C 1.50701 * 109.47064 * 205.00235 * 13 12 10 17 17 H 1.08003 * 119.99744 * 359.97438 * 16 13 12 18 18 C 1.37878 * 120.00247 * 179.97438 * 16 13 12 19 19 N 1.31521 * 119.99801 * 359.97438 * 18 16 13 20 20 Si 1.86794 * 120.00180 * 179.97438 * 18 16 13 21 21 H 1.48501 * 109.46919 * 90.00164 * 20 18 16 22 22 H 1.48496 * 109.47543 * 210.00133 * 20 18 16 23 23 H 1.48501 * 109.47430 * 330.00371 * 20 18 16 24 24 H 1.09000 * 109.46642 * 270.01418 * 1 2 3 25 25 H 1.09003 * 109.46961 * 30.01639 * 1 2 3 26 26 H 1.09001 * 109.46806 * 150.01907 * 1 2 3 27 27 H 1.07999 * 119.97507 * 359.97438 * 3 2 1 28 28 H 1.08000 * 119.97293 * 180.27179 * 6 4 3 29 29 H 1.08007 * 120.02370 * 179.74868 * 7 6 4 30 30 H 0.97004 * 119.99906 * 312.65047 * 9 8 2 31 31 H 0.96998 * 120.00298 * 359.97438 * 12 10 9 32 32 H 1.09005 * 109.47016 * 299.99749 * 15 13 12 33 33 H 1.08997 * 109.47444 * 59.99724 * 15 13 12 34 34 H 1.09003 * 109.47164 * 180.02562 * 15 13 12 35 35 H 0.96995 * 119.99667 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1961 0.0000 4 6 3.5827 1.1967 0.0005 5 9 4.2567 2.3675 0.0000 6 6 4.2775 -0.0013 0.0072 7 6 3.5905 -1.1991 0.0018 8 6 2.2017 -1.2019 0.0005 9 7 1.5032 -2.4153 0.0016 10 6 1.8520 -3.3946 -0.8562 11 16 3.2174 -3.1980 -1.8703 12 7 1.1260 -4.5285 -0.9158 13 6 1.5049 -5.5926 -1.8487 14 1 1.9054 -5.1505 -2.7610 15 6 2.5695 -6.4818 -1.2030 16 6 0.2924 -6.4227 -2.1831 17 1 -0.6646 -6.1820 -1.7442 18 6 0.4048 -7.4896 -3.0493 19 7 1.5702 -7.7824 -3.5841 20 14 -1.0979 -8.5189 -3.4632 21 1 -1.7786 -7.9454 -4.6519 22 1 -0.6777 -9.9124 -3.7579 23 1 -2.0324 -8.5173 -2.3091 24 1 -0.3632 0.0003 1.0277 25 1 -0.3633 0.8899 -0.5141 26 1 -0.3633 -0.8902 -0.5135 27 1 1.6581 2.1314 -0.0004 28 1 5.3575 0.0014 0.0121 29 1 4.1328 -2.1332 0.0029 30 1 0.7682 -2.5513 0.6199 31 1 0.3527 -4.6400 -0.3410 32 1 3.4465 -5.8814 -0.9612 33 1 2.1691 -6.9240 -0.2907 34 1 2.8517 -7.2733 -1.8973 35 1 1.6491 -8.5327 -4.1937 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001196146955.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:20 Heat of formation + Delta-G solvation = -22.293866 kcal Electronic energy + Delta-G solvation = -19295.093456 eV Core-core repulsion = 16139.918983 eV Total energy + Delta-G solvation = -3155.174473 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.090 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.85553 -41.25241 -39.30668 -36.81022 -34.62531 -33.75317 -31.47409 -29.85478 -27.86530 -27.41253 -25.53072 -23.38080 -23.16558 -22.39070 -19.98103 -19.21879 -18.11918 -17.97583 -17.35229 -17.14452 -16.65529 -16.53529 -15.64431 -15.36226 -15.11196 -14.69008 -14.49912 -14.38830 -14.22883 -13.76464 -13.59810 -13.04172 -12.95664 -12.84829 -12.74062 -12.56986 -12.30355 -12.19466 -12.13368 -11.99712 -11.15716 -10.75335 -10.46252 -9.93211 -9.28036 -8.87839 -8.20388 -8.16607 -6.37810 -0.11661 0.31252 0.56574 0.96594 1.45288 1.45434 1.55253 1.63754 2.38162 2.59057 2.73462 3.12170 3.28552 3.76470 3.84237 4.18023 4.29029 4.38364 4.62218 4.73969 4.77731 4.87416 4.93121 5.03735 5.13051 5.20894 5.22086 5.23544 5.30525 5.42126 5.52064 5.72710 5.82660 5.94985 6.02099 6.16783 6.54087 6.75629 7.32598 8.86113 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.034194 B = 0.003923 C = 0.003663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.655778 B = 7135.957038 C = 7641.798191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.056 4.056 3 C -0.151 4.151 4 C 0.095 3.905 5 F -0.144 7.144 6 C -0.164 4.164 7 C -0.047 4.047 8 C 0.107 3.893 9 N -0.619 5.619 10 C 0.576 3.424 11 S -0.727 6.727 12 N -0.634 5.634 13 C 0.271 3.729 14 H 0.040 0.960 15 C -0.132 4.132 16 C -0.555 4.555 17 H 0.075 0.925 18 C 0.021 3.979 19 N -0.909 5.909 20 Si 0.971 3.029 21 H -0.279 1.279 22 H -0.285 1.285 23 H -0.259 1.259 24 H 0.100 0.900 25 H 0.089 0.911 26 H 0.061 0.939 27 H 0.164 0.836 28 H 0.144 0.856 29 H 0.133 0.867 30 H 0.424 0.576 31 H 0.409 0.591 32 H 0.027 0.973 33 H 0.035 0.965 34 H 0.069 0.931 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.600 14.559 11.986 19.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.059 4.059 3 C -0.171 4.171 4 C 0.075 3.925 5 F -0.123 7.123 6 C -0.184 4.184 7 C -0.069 4.069 8 C 0.013 3.987 9 N -0.248 5.248 10 C 0.212 3.788 11 S -0.598 6.598 12 N -0.257 5.257 13 C 0.168 3.832 14 H 0.058 0.942 15 C -0.191 4.191 16 C -0.594 4.594 17 H 0.093 0.907 18 C -0.180 4.180 19 N -0.546 5.546 20 Si 0.795 3.205 21 H -0.205 1.205 22 H -0.211 1.211 23 H -0.183 1.183 24 H 0.119 0.881 25 H 0.108 0.892 26 H 0.080 0.920 27 H 0.181 0.819 28 H 0.162 0.838 29 H 0.151 0.849 30 H 0.266 0.734 31 H 0.247 0.753 32 H 0.046 0.954 33 H 0.055 0.945 34 H 0.088 0.912 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.587 14.411 11.064 18.519 hybrid contribution -1.252 -0.890 0.310 1.567 sum -4.839 13.521 11.375 18.320 Atomic orbital electron populations 1.20876 0.88047 1.04020 1.04282 1.19803 0.97830 0.89924 0.98364 1.20969 0.91586 0.99436 1.05116 1.17839 0.90775 0.80873 1.02965 1.91475 1.80661 1.46169 1.93991 1.21030 1.01511 0.90418 1.05468 1.21238 0.93290 0.98843 0.93579 1.17375 0.91022 0.83683 1.06578 1.41897 1.35703 1.11621 1.35584 1.21827 0.89506 0.82327 0.85153 1.93403 1.23837 1.90007 1.52569 1.45648 1.27250 1.14100 1.38657 1.18970 0.94550 0.82366 0.87293 0.94237 1.21855 0.97365 1.00254 0.99664 1.21452 0.94775 1.13961 1.29183 0.90728 1.25698 0.98991 0.98164 0.95148 1.70058 1.25146 1.29145 1.30254 0.85366 0.78897 0.77440 0.78757 1.20502 1.21086 1.18340 0.88118 0.89248 0.92048 0.81862 0.83801 0.84901 0.73403 0.75262 0.95412 0.94544 0.91208 0.92428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.59 9.59 71.24 0.68 -0.90 16 2 C -0.06 -1.15 5.90 -19.75 -0.12 -1.26 16 3 C -0.15 -3.00 9.67 22.30 0.22 -2.79 16 4 C 0.10 2.26 7.30 22.38 0.16 2.42 16 5 F -0.14 -3.45 17.26 44.97 0.78 -2.68 16 6 C -0.16 -4.24 10.02 22.30 0.22 -4.02 16 7 C -0.05 -1.36 7.88 22.39 0.18 -1.19 16 8 C 0.11 2.77 5.85 38.13 0.22 3.00 16 9 N -0.62 -15.59 4.43 -189.94 -0.84 -16.43 16 10 C 0.58 20.43 7.81 179.05 1.40 21.83 16 11 S -0.73 -33.27 23.82 -56.49 -1.35 -34.62 16 12 N -0.63 -22.93 5.07 -333.15 -1.69 -24.62 16 13 C 0.27 12.86 2.32 44.24 0.10 12.96 16 14 H 0.04 2.26 6.82 -2.39 -0.02 2.25 16 15 C -0.13 -6.30 9.21 71.98 0.66 -5.63 16 16 C -0.56 -27.31 8.73 25.60 0.22 -27.09 16 17 H 0.07 3.37 7.74 -2.91 -0.02 3.35 16 18 C 0.02 1.10 5.30 84.65 0.45 1.55 16 19 N -0.91 -50.23 11.32 21.45 0.24 -49.99 16 20 Si 0.97 40.11 29.54 68.60 2.03 42.14 16 21 H -0.28 -11.51 7.11 99.48 0.71 -10.81 16 22 H -0.29 -11.79 7.11 99.48 0.71 -11.08 16 23 H -0.26 -10.01 7.11 99.48 0.71 -9.31 16 24 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.09 1.01 8.09 -2.39 -0.02 0.99 16 26 H 0.06 0.96 7.38 -2.39 -0.02 0.95 16 27 H 0.16 2.29 8.06 -2.91 -0.02 2.26 16 28 H 0.14 3.35 8.06 -2.91 -0.02 3.33 16 29 H 0.13 4.51 6.32 -4.56 -0.03 4.48 16 30 H 0.42 7.15 8.48 -92.71 -0.79 6.36 16 31 H 0.41 11.65 8.56 -92.71 -0.79 10.86 16 32 H 0.03 1.29 7.48 -2.38 -0.02 1.28 16 33 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.07 3.73 6.07 -2.39 -0.01 3.72 16 35 H 0.27 14.04 8.31 -92.71 -0.77 13.27 16 Total: -1.00 -66.14 309.99 3.12 -63.01 By element: Atomic # 1 Polarization: 24.75 SS G_CDS: -0.45 Total: 24.30 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: 4.41 Total: -1.12 kcal Atomic # 7 Polarization: -88.74 SS G_CDS: -2.29 Total: -91.03 kcal Atomic # 9 Polarization: -3.45 SS G_CDS: 0.78 Total: -2.68 kcal Atomic # 14 Polarization: 40.11 SS G_CDS: 2.03 Total: 42.14 kcal Atomic # 16 Polarization: -33.27 SS G_CDS: -1.35 Total: -34.62 kcal Total: -66.14 3.12 -63.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196146955.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.721 kcal (2) G-P(sol) polarization free energy of solvation -66.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds