Wall clock time and date at job start Tue Mar 31 2020 05:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47407 * 2 1 4 4 C 1.50697 * 109.47050 * 120.00343 * 2 1 3 5 5 H 1.07998 * 120.00542 * 119.99372 * 4 2 1 6 6 C 1.37883 * 120.00095 * 299.99901 * 4 2 1 7 7 N 1.31521 * 119.99544 * 0.02562 * 6 4 2 8 8 Si 1.86791 * 120.00268 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47232 * 60.00190 * 8 6 4 10 10 H 1.48502 * 109.47176 * 179.97438 * 8 6 4 11 11 H 1.48493 * 109.47590 * 300.00036 * 8 6 4 12 12 N 1.46503 * 109.46983 * 239.99688 * 2 1 3 13 13 C 1.34783 * 119.99449 * 85.00419 * 12 2 1 14 14 S 1.71198 * 120.00090 * 359.97438 * 13 12 2 15 15 N 1.34779 * 119.99768 * 179.97438 * 13 12 2 16 16 C 1.46499 * 119.99872 * 180.02562 * 15 13 12 17 17 C 1.50701 * 109.46992 * 179.97438 * 16 15 13 18 18 C 1.38244 * 119.97486 * 269.72684 * 17 16 15 19 19 C 1.38202 * 120.02338 * 179.72838 * 18 17 16 20 20 C 1.38457 * 119.97200 * 0.56577 * 19 18 17 21 21 F 1.35099 * 120.02649 * 179.68648 * 20 19 18 22 22 C 1.38455 * 119.95159 * 359.70550 * 20 19 18 23 23 C 1.38200 * 119.97412 * 0.02562 * 22 20 19 24 24 H 1.08995 * 109.47416 * 300.00038 * 1 2 3 25 25 H 1.09006 * 109.47089 * 59.99863 * 1 2 3 26 26 H 1.09000 * 109.47407 * 180.02562 * 1 2 3 27 27 H 0.96996 * 119.99647 * 180.02562 * 7 6 4 28 28 H 0.96992 * 120.00655 * 265.00146 * 12 2 1 29 29 H 0.97000 * 119.99708 * 359.97438 * 15 13 12 30 30 H 1.09002 * 109.47391 * 59.99686 * 16 15 13 31 31 H 1.09001 * 109.46813 * 299.99742 * 16 15 13 32 32 H 1.07996 * 119.98449 * 359.97438 * 18 17 16 33 33 H 1.07995 * 120.01101 * 180.25281 * 19 18 17 34 34 H 1.08001 * 120.01453 * 179.97438 * 22 20 19 35 35 H 1.08008 * 119.98737 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6531 -1.5886 1.1314 6 6 1.6992 -0.2395 2.4828 7 7 0.9427 0.8296 2.6034 8 14 2.3212 -1.1205 4.0079 9 1 3.8062 -1.1211 4.0082 10 1 1.8268 -0.4201 5.2204 11 1 1.8257 -2.5203 4.0077 12 7 2.0183 -0.6907 -1.1962 13 6 2.1470 -0.0182 -2.3571 14 16 1.7393 1.6427 -2.4341 15 7 2.5967 -0.6535 -3.4575 16 6 2.7372 0.0775 -4.7193 17 6 3.2547 -0.8542 -5.7847 18 6 4.6163 -0.9874 -5.9838 19 6 5.0921 -1.8458 -6.9568 20 6 4.2044 -2.5637 -7.7401 21 9 4.6682 -3.3984 -8.6958 22 6 2.8408 -2.4252 -7.5435 23 6 2.3674 -1.5704 -6.5662 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 0.7086 1.1611 3.4844 28 1 2.2489 -1.6318 -1.1527 29 1 2.8281 -1.5945 -3.4137 30 1 3.4383 0.9014 -4.5858 31 1 1.7667 0.4716 -5.0208 32 1 5.3083 -0.4234 -5.3761 33 1 6.1559 -1.9528 -7.1094 34 1 2.1474 -2.9844 -8.1542 35 1 1.3038 -1.4620 -6.4130 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001196509434.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:51 Heat of formation + Delta-G solvation = -11.138595 kcal Electronic energy + Delta-G solvation = -18708.719251 eV Core-core repulsion = 15554.028507 eV Total energy + Delta-G solvation = -3154.690744 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.090 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.24014 -39.74034 -38.16270 -35.57127 -32.99655 -31.52553 -31.32717 -28.91878 -25.93536 -25.33391 -23.43239 -23.09576 -21.95666 -20.85697 -18.38739 -18.00816 -16.89010 -16.75561 -16.02011 -15.88551 -15.50748 -14.89985 -14.62631 -14.58574 -14.10096 -13.91607 -13.71321 -13.46134 -12.67352 -12.54365 -12.40873 -11.89934 -11.54326 -11.35822 -11.11843 -10.92726 -10.57906 -10.45457 -10.29488 -10.28117 -9.49639 -9.16315 -9.05359 -8.69712 -8.34102 -7.10166 -6.63299 -6.18468 -4.29885 0.65420 0.85039 2.13752 2.64111 3.04307 3.20901 3.26791 3.27457 3.49831 3.88275 4.19823 4.33890 4.34641 4.41121 4.52984 4.89725 4.89899 5.13501 5.39538 5.50856 5.58461 5.73654 5.78757 5.82792 6.17957 6.40152 6.49682 6.64492 6.88935 7.06238 7.07214 7.46466 7.53575 7.65008 7.86908 8.09497 8.30903 8.72392 9.35762 10.86666 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.028078 B = 0.003257 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.997914 B = 8594.029470 C = 9126.912461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.261 3.739 3 H 0.082 0.918 4 C -0.546 4.546 5 H 0.058 0.942 6 C 0.072 3.928 7 N -0.875 5.875 8 Si 0.903 3.097 9 H -0.276 1.276 10 H -0.284 1.284 11 H -0.277 1.277 12 N -0.649 5.649 13 C 0.560 3.440 14 S -0.672 6.672 15 N -0.703 5.703 16 C 0.174 3.826 17 C -0.118 4.118 18 C -0.069 4.069 19 C -0.157 4.157 20 C 0.103 3.897 21 F -0.140 7.140 22 C -0.157 4.157 23 C -0.069 4.069 24 H 0.095 0.905 25 H 0.031 0.969 26 H 0.020 0.980 27 H 0.267 0.733 28 H 0.387 0.613 29 H 0.391 0.609 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.137 0.863 33 H 0.137 0.863 34 H 0.137 0.863 35 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.436 -8.093 -17.952 20.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.160 3.840 3 H 0.100 0.900 4 C -0.585 4.585 5 H 0.076 0.924 6 C -0.133 4.133 7 N -0.511 5.511 8 Si 0.730 3.270 9 H -0.201 1.201 10 H -0.209 1.209 11 H -0.202 1.202 12 N -0.272 5.272 13 C 0.197 3.803 14 S -0.547 6.547 15 N -0.337 5.337 16 C 0.050 3.950 17 C -0.119 4.119 18 C -0.087 4.087 19 C -0.175 4.175 20 C 0.083 3.917 21 F -0.119 7.119 22 C -0.176 4.176 23 C -0.088 4.088 24 H 0.113 0.887 25 H 0.050 0.950 26 H 0.039 0.961 27 H 0.077 0.923 28 H 0.221 0.779 29 H 0.227 0.773 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.155 0.845 33 H 0.155 0.845 34 H 0.155 0.845 35 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 5.032 -6.751 -17.797 19.688 hybrid contribution 0.847 -2.462 0.705 2.698 sum 5.879 -9.213 -17.092 20.288 Atomic orbital electron populations 1.22047 0.97261 0.98885 1.02281 1.19393 0.91944 0.95367 0.77279 0.89999 1.21094 1.33500 1.13591 0.90301 0.92356 1.24830 0.94659 0.94898 0.98908 1.69900 1.34999 1.21940 1.24235 0.86485 0.79185 0.79511 0.81787 1.20140 1.20930 1.20206 1.46119 1.59306 1.12750 1.08987 1.22209 0.81494 0.94982 0.81622 1.93209 1.72855 0.95375 1.93280 1.44899 1.67323 1.12875 1.08568 1.20344 1.03409 0.92338 0.78909 1.20102 0.93603 0.99428 0.98734 1.21066 0.95107 0.96384 0.96188 1.21182 1.00262 0.98653 0.97444 1.17804 0.92688 0.92088 0.89102 1.91508 1.89397 1.69358 1.61635 1.21177 0.93720 1.01750 1.00915 1.21058 1.00446 0.93814 0.93462 0.88659 0.95025 0.96061 0.92273 0.77882 0.77302 0.88950 0.88970 0.84474 0.84522 0.84535 0.84509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.52 9.21 37.16 0.34 -3.18 16 2 C 0.26 6.33 2.32 -69.08 -0.16 6.17 16 3 H 0.08 2.31 6.82 -51.93 -0.35 1.96 16 4 C -0.55 -14.00 8.73 -34.44 -0.30 -14.30 16 5 H 0.06 1.42 7.74 -52.49 -0.41 1.01 16 6 C 0.07 1.88 5.30 -17.81 -0.09 1.79 16 7 N -0.87 -24.14 11.32 55.43 0.63 -23.52 16 8 Si 0.90 20.19 29.54 -169.99 -5.02 15.17 16 9 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 10 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 12 N -0.65 -12.54 5.07 -56.65 -0.29 -12.82 16 13 C 0.56 10.21 7.95 -86.91 -0.69 9.51 16 14 S -0.67 -15.18 26.58 -107.50 -2.86 -18.04 16 15 N -0.70 -9.10 5.55 -63.21 -0.35 -9.45 16 16 C 0.17 1.97 5.25 -5.19 -0.03 1.94 16 17 C -0.12 -1.05 5.25 -104.62 -0.55 -1.60 16 18 C -0.07 -0.57 9.70 -39.59 -0.38 -0.95 16 19 C -0.16 -1.28 10.03 -39.51 -0.40 -1.67 16 20 C 0.10 0.92 7.30 -39.42 -0.29 0.63 16 21 F -0.14 -1.38 17.27 2.25 0.04 -1.34 16 22 C -0.16 -1.27 10.03 -39.52 -0.40 -1.66 16 23 C -0.07 -0.57 9.70 -39.59 -0.38 -0.95 16 24 H 0.09 2.53 6.07 -51.93 -0.32 2.22 16 25 H 0.03 0.75 7.48 -51.93 -0.39 0.36 16 26 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 28 H 0.39 6.35 8.55 -40.82 -0.35 6.00 16 29 H 0.39 4.09 8.48 -40.82 -0.35 3.74 16 30 H 0.09 1.14 7.93 -51.93 -0.41 0.73 16 31 H 0.09 1.13 7.93 -51.93 -0.41 0.72 16 32 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 33 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 34 H 0.14 0.88 8.06 -52.49 -0.42 0.45 16 35 H 0.14 0.97 8.06 -52.48 -0.42 0.55 16 LS Contribution 317.10 15.07 4.78 4.78 Total: -1.00 -30.71 317.10 -10.63 -41.34 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -4.23 Total: 8.16 kcal Atomic # 6 Polarization: -0.95 SS G_CDS: -3.33 Total: -4.28 kcal Atomic # 7 Polarization: -45.78 SS G_CDS: -0.01 Total: -45.79 kcal Atomic # 9 Polarization: -1.38 SS G_CDS: 0.04 Total: -1.34 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Atomic # 16 Polarization: -15.18 SS G_CDS: -2.86 Total: -18.04 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.71 -10.63 -41.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196509434.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.200 kcal (2) G-P(sol) polarization free energy of solvation -30.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds