Wall clock time and date at job start Tue Mar 31 2020 05:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38136 * 119.97457 * 2 1 4 4 C 1.38838 * 119.95318 * 180.02562 * 3 2 1 5 5 N 1.40009 * 120.04909 * 179.97438 * 4 3 2 6 6 C 1.34776 * 120.00287 * 134.79224 * 5 4 3 7 7 S 1.71203 * 119.99892 * 4.12994 * 6 5 4 8 8 N 1.34776 * 119.99792 * 184.13197 * 6 5 4 9 9 C 1.46501 * 120.00093 * 359.97438 * 8 6 5 10 10 C 1.46501 * 119.99747 * 179.97438 * 8 6 5 11 11 C 1.50700 * 109.47029 * 89.99680 * 10 8 6 12 12 H 1.07996 * 119.99929 * 0.02562 * 11 10 8 13 13 C 1.37884 * 119.99801 * 179.97438 * 11 10 8 14 14 N 1.31511 * 120.00034 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99727 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47313 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.46705 * 120.00308 * 15 13 11 18 18 H 1.48500 * 109.47297 * 240.00097 * 15 13 11 19 19 C 1.38878 * 119.90740 * 359.97438 * 4 3 2 20 20 C 1.38091 * 119.95510 * 359.97438 * 19 4 3 21 21 C 1.38446 * 119.97913 * 179.97438 * 2 1 3 22 22 F 1.35101 * 119.95327 * 359.71848 * 21 2 1 23 23 H 1.08996 * 109.47019 * 270.02346 * 1 2 3 24 24 H 1.08995 * 109.47066 * 30.02516 * 1 2 3 25 25 H 1.08995 * 109.47138 * 150.02307 * 1 2 3 26 26 H 1.07995 * 120.02704 * 359.97308 * 3 2 1 27 27 H 0.96999 * 119.99245 * 314.79777 * 5 4 3 28 28 H 1.08999 * 109.46816 * 90.00441 * 9 8 6 29 29 H 1.09004 * 109.46910 * 209.99607 * 9 8 6 30 30 H 1.08997 * 109.46988 * 330.00149 * 9 8 6 31 31 H 1.08998 * 109.46953 * 209.99927 * 10 8 6 32 32 H 1.09000 * 109.47177 * 329.99713 * 10 8 6 33 33 H 0.96998 * 120.00000 * 179.97438 * 14 13 11 34 34 H 1.08000 * 120.02175 * 180.02562 * 19 4 3 35 35 H 1.08002 * 119.97707 * 180.02562 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1966 0.0000 4 6 3.5855 1.1961 -0.0005 5 7 4.2871 2.4077 -0.0011 6 6 5.3367 2.5791 0.8268 7 16 5.8783 1.2808 1.8025 8 7 5.9599 3.7726 0.8865 9 6 5.4968 4.8835 0.0512 10 6 7.1005 3.9591 1.7868 11 6 8.3752 3.6134 1.0609 12 1 8.3392 3.2878 0.0319 13 6 9.5873 3.7138 1.7104 14 7 9.6311 4.1107 2.9634 15 14 11.1673 3.2859 0.8104 16 1 10.8485 2.8703 -0.5791 17 1 12.0567 4.4748 0.7794 18 1 11.8528 2.1732 1.5155 19 6 4.2775 -0.0080 -0.0005 20 6 3.5838 -1.2020 0.0005 21 6 2.1988 -1.1992 0.0005 22 9 1.5219 -2.3684 0.0068 23 1 -0.3633 0.0004 1.0276 24 1 -0.3633 0.8897 -0.5142 25 1 -0.3633 -0.8901 -0.5134 26 1 1.6572 2.1319 -0.0004 27 1 4.0175 3.1238 -0.5973 28 1 4.7429 5.4552 0.5924 29 1 6.3392 5.5313 -0.1915 30 1 5.0638 4.4904 -0.8686 31 1 7.1391 4.9981 2.1140 32 1 6.9887 3.3088 2.6544 33 1 10.4837 4.1810 3.4204 34 1 5.3575 -0.0106 -0.0005 35 1 4.1216 -2.1386 0.0010 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201025253.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:44 Heat of formation + Delta-G solvation = 7.537965 kcal Electronic energy + Delta-G solvation = -19314.167181 eV Core-core repulsion = 16160.286314 eV Total energy + Delta-G solvation = -3153.880868 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.090 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.80191 -39.99231 -38.21336 -35.27590 -32.79650 -32.46386 -29.63248 -28.37804 -26.98674 -26.76913 -23.67953 -22.83193 -21.54806 -20.82816 -18.07109 -17.49846 -17.37000 -16.66965 -16.27851 -15.59074 -15.37301 -14.63990 -14.46063 -14.10546 -13.79348 -13.57689 -13.27522 -13.23061 -12.97563 -12.58995 -12.31873 -12.23443 -12.05146 -11.52331 -11.43244 -11.05053 -10.90045 -10.77049 -10.42007 -10.21280 -9.89164 -9.00468 -8.82626 -8.51127 -7.97730 -7.02348 -6.30843 -6.12223 -4.16787 1.07228 1.35137 2.04600 2.52280 3.15163 3.26977 3.36062 3.38566 3.64385 3.72380 4.34855 4.39292 4.71260 4.81559 5.01377 5.10021 5.23841 5.37068 5.38519 5.42243 5.47650 5.67963 5.71106 5.73757 5.97068 6.21637 6.24594 6.43573 6.51440 6.61087 7.02431 7.05082 7.36422 7.43106 7.80461 7.82680 8.04982 8.81812 9.46681 10.96374 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.029127 B = 0.004206 C = 0.003900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.065159 B = 6654.883615 C = 7178.399523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.123 4.123 3 C -0.104 4.104 4 C 0.136 3.864 5 N -0.653 5.653 6 C 0.550 3.450 7 S -0.627 6.627 8 N -0.535 5.535 9 C 0.060 3.940 10 C 0.234 3.766 11 C -0.522 4.522 12 H 0.057 0.943 13 C 0.068 3.932 14 N -0.889 5.889 15 Si 0.901 3.099 16 H -0.274 1.274 17 H -0.284 1.284 18 H -0.281 1.281 19 C -0.044 4.044 20 C -0.146 4.146 21 C 0.092 3.908 22 F -0.143 7.143 23 H 0.071 0.929 24 H 0.068 0.932 25 H 0.067 0.933 26 H 0.129 0.871 27 H 0.401 0.599 28 H 0.063 0.937 29 H 0.095 0.905 30 H 0.059 0.941 31 H 0.040 0.960 32 H 0.080 0.920 33 H 0.264 0.736 34 H 0.161 0.839 35 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.327 -1.955 -9.045 18.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.126 4.126 3 C -0.126 4.126 4 C 0.042 3.958 5 N -0.284 5.284 6 C 0.192 3.808 7 S -0.492 6.492 8 N -0.238 5.238 9 C -0.086 4.086 10 C 0.116 3.884 11 C -0.561 4.561 12 H 0.076 0.924 13 C -0.135 4.135 14 N -0.527 5.527 15 Si 0.729 3.271 16 H -0.199 1.199 17 H -0.211 1.211 18 H -0.206 1.206 19 C -0.067 4.067 20 C -0.167 4.167 21 C 0.072 3.928 22 F -0.122 7.122 23 H 0.090 0.910 24 H 0.087 0.913 25 H 0.086 0.914 26 H 0.147 0.853 27 H 0.240 0.760 28 H 0.082 0.918 29 H 0.113 0.887 30 H 0.077 0.923 31 H 0.058 0.942 32 H 0.098 0.902 33 H 0.074 0.926 34 H 0.178 0.822 35 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -15.706 -2.584 -8.160 17.887 hybrid contribution 0.484 0.749 -1.154 1.458 sum -15.222 -1.835 -9.314 17.940 Atomic orbital electron populations 1.20646 0.90290 1.02878 1.02617 1.19480 0.96539 0.91289 1.05282 1.20577 0.91850 0.97600 1.02530 1.17358 0.90027 0.84913 1.03518 1.42268 1.30405 1.16039 1.39683 1.22314 0.82411 0.90455 0.85642 1.93147 1.75851 1.29607 1.50550 1.47821 1.30446 1.06655 1.38901 1.22021 1.01777 0.90715 0.94095 1.20066 0.79811 0.98684 0.89826 1.21137 0.90152 1.46310 0.98506 0.92446 1.24834 0.99051 0.94784 0.94822 1.69924 1.26218 1.46481 1.10101 0.86398 0.82896 0.78073 0.79777 1.19869 1.21066 1.20643 1.21570 1.02753 0.89608 0.92799 1.20958 0.91665 0.99594 1.04522 1.17559 0.90056 0.80687 1.04484 1.91446 1.80374 1.46302 1.94053 0.91044 0.91328 0.91379 0.85323 0.76004 0.91827 0.88662 0.92252 0.94178 0.90224 0.92585 0.82174 0.84520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.97 9.83 36.01 0.35 -0.61 16 2 C -0.12 -1.47 5.88 -104.58 -0.62 -2.09 16 3 C -0.10 -1.24 9.62 -39.40 -0.38 -1.62 16 4 C 0.14 1.96 5.94 -83.66 -0.50 1.47 16 5 N -0.65 -9.46 5.20 -11.38 -0.06 -9.52 16 6 C 0.55 10.55 7.56 -86.92 -0.66 9.89 16 7 S -0.63 -14.82 24.22 -107.50 -2.60 -17.42 16 8 N -0.54 -10.21 2.86 -184.99 -0.53 -10.74 16 9 C 0.06 0.79 10.24 59.85 0.61 1.41 16 10 C 0.23 5.67 4.92 -5.19 -0.03 5.65 16 11 C -0.52 -13.92 9.39 -34.44 -0.32 -14.25 16 12 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 13 C 0.07 1.87 5.46 -17.82 -0.10 1.77 16 14 N -0.89 -25.52 13.29 55.43 0.74 -24.78 16 15 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 16 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 C -0.04 -0.68 7.87 -39.40 -0.31 -0.99 16 20 C -0.15 -2.04 10.02 -39.54 -0.40 -2.44 16 21 C 0.09 1.22 7.24 -39.41 -0.29 0.94 16 22 F -0.14 -1.89 16.47 2.25 0.04 -1.85 16 23 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 25 H 0.07 0.59 7.64 -51.93 -0.40 0.19 16 26 H 0.13 1.21 8.06 -52.49 -0.42 0.78 16 27 H 0.40 4.36 6.52 -40.82 -0.27 4.09 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.09 1.29 8.07 -51.93 -0.42 0.87 16 30 H 0.06 0.60 6.31 -51.93 -0.33 0.27 16 31 H 0.04 0.98 8.07 -51.93 -0.42 0.56 16 32 H 0.08 2.21 6.58 -51.93 -0.34 1.87 16 33 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 34 H 0.16 2.89 6.08 -44.01 -0.27 2.62 16 35 H 0.14 1.70 8.06 -52.49 -0.42 1.27 16 LS Contribution 312.73 15.07 4.71 4.71 Total: -1.00 -32.17 312.73 -9.44 -41.61 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -4.09 Total: 2.51 kcal Atomic # 6 Polarization: 1.75 SS G_CDS: -2.62 Total: -0.87 kcal Atomic # 7 Polarization: -45.19 SS G_CDS: 0.15 Total: -45.05 kcal Atomic # 9 Polarization: -1.89 SS G_CDS: 0.04 Total: -1.85 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: -14.82 SS G_CDS: -2.60 Total: -17.42 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.17 -9.44 -41.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201025253.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.147 kcal (2) G-P(sol) polarization free energy of solvation -32.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds