Wall clock time and date at job start Tue Mar 31 2020 05:11:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39869 * 120.09824 * 10.73326 * 3 2 1 5 5 C 1.37563 * 119.95489 * 179.71409 * 4 3 2 6 6 C 1.39307 * 120.13619 * 0.56367 * 5 4 3 7 7 N 1.39142 * 119.90848 * 179.73798 * 6 5 4 8 8 C 1.38841 * 119.99974 * 155.21431 * 7 6 5 9 9 C 1.39593 * 119.84116 * 327.79175 * 8 7 6 10 10 C 1.36320 * 120.15276 * 179.71974 * 9 8 7 11 11 C 1.40902 * 119.83972 * 0.54905 * 10 9 8 12 12 C 1.41100 * 120.15307 * 179.70100 * 11 10 9 13 13 H 1.08002 * 120.00171 * 207.70192 * 12 11 10 14 14 C 1.39856 * 120.00243 * 27.70342 * 12 11 10 15 15 N 1.30913 * 120.00042 * 12.23290 * 14 12 11 16 16 Si 1.86803 * 120.00362 * 192.23069 * 14 12 11 17 17 H 1.48499 * 109.47000 * 89.99960 * 16 14 12 18 18 H 1.48498 * 109.47399 * 209.99868 * 16 14 12 19 19 H 1.48495 * 109.46925 * 330.00490 * 16 14 12 20 20 C 1.40902 * 119.69359 * 359.72039 * 11 10 9 21 21 C 1.36314 * 119.83740 * 0.02562 * 20 11 10 22 22 C 1.39097 * 120.18256 * 359.71206 * 6 5 4 23 23 C 1.37963 * 120.04573 * 0.02562 * 22 6 5 24 24 F 1.35094 * 120.06852 * 179.97438 * 23 22 6 25 25 H 1.08005 * 120.01725 * 359.97275 * 4 3 2 26 26 H 1.07995 * 119.93232 * 180.27338 * 5 4 3 27 27 H 0.97001 * 119.99877 * 335.21254 * 7 6 5 28 28 H 1.07999 * 119.92499 * 359.97438 * 9 8 7 29 29 H 1.08003 * 120.08059 * 180.24891 * 10 9 8 30 30 H 0.96997 * 119.99803 * 180.02562 * 15 14 12 31 31 H 1.07999 * 120.08296 * 179.97438 * 20 11 10 32 32 H 1.07998 * 119.92207 * 179.97438 * 21 20 11 33 33 H 1.08000 * 119.97722 * 180.02562 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2700 -1.1880 -0.2254 5 6 4.6456 -1.1829 -0.2306 6 6 5.3415 0.0017 -0.0002 7 7 6.7329 0.0004 -0.0011 8 6 7.4280 1.1676 -0.2876 9 6 6.8884 2.0964 -1.1791 10 6 7.5627 3.2472 -1.4606 11 6 8.8127 3.4925 -0.8582 12 6 9.5193 4.6785 -1.1498 13 1 10.5972 4.6951 -1.0836 14 6 8.8240 5.8327 -1.5244 15 7 7.5246 5.8912 -1.3761 16 14 9.7493 7.2910 -2.2362 17 1 9.8242 7.1566 -3.7132 18 1 9.0369 8.5468 -1.8889 19 1 11.1226 7.3288 -1.6725 20 6 9.3539 2.5479 0.0363 21 6 8.6661 1.4039 0.3126 22 6 4.6492 1.1860 0.2303 23 6 3.2696 1.1905 0.2318 24 9 2.5967 2.3403 0.4561 25 1 2.7322 -2.1084 -0.3993 26 1 5.1872 -2.1000 -0.4090 27 1 7.2172 -0.8160 0.1985 28 1 5.9324 1.9048 -1.6437 29 1 7.1423 3.9668 -2.1474 30 1 7.0424 6.6916 -1.6363 31 1 10.3116 2.7294 0.5012 32 1 9.0798 0.6787 0.9976 33 1 5.1920 2.1025 0.4082 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204062082.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:16 Heat of formation + Delta-G solvation = 30.743854 kcal Electronic energy + Delta-G solvation = -20106.364842 eV Core-core repulsion = 16818.046306 eV Total energy + Delta-G solvation = -3288.318536 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -48.83481 -39.72971 -37.92687 -36.45180 -35.09663 -33.31083 -30.77809 -30.29464 -29.68206 -28.49173 -25.16413 -23.14442 -22.81791 -21.16450 -20.53234 -18.97096 -17.74883 -17.44983 -16.96409 -15.80096 -15.55783 -15.45239 -15.17540 -14.36256 -13.99584 -13.80437 -13.66484 -13.51450 -13.14661 -12.96319 -12.69246 -12.44047 -12.20101 -12.01603 -11.90027 -11.66053 -11.29433 -11.19108 -11.00504 -10.69901 -10.29357 -9.95250 -9.58736 -9.31861 -8.80123 -8.13027 -7.77989 -6.91808 -6.79133 -4.43798 0.85527 1.30560 2.54404 2.76820 2.85037 2.97755 3.01281 3.03642 3.17839 3.63721 3.83410 3.87983 4.04691 4.30375 4.49066 4.81296 5.14247 5.33982 5.48829 5.58992 5.90582 5.96753 5.99098 6.08366 6.20104 6.33236 6.59677 6.69190 6.85674 6.89535 7.05488 7.21430 7.38376 7.53638 7.61592 7.84352 7.90077 8.10193 8.14919 8.44807 8.72155 8.78034 10.06164 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.022454 B = 0.004162 C = 0.003609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.670647 B = 6725.243716 C = 7755.703478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C 0.270 3.730 3 C -0.145 4.145 4 C 0.001 3.999 5 C -0.211 4.211 6 C 0.270 3.730 7 N -0.649 5.649 8 C 0.000 4.000 9 C -0.117 4.117 10 C -0.141 4.141 11 C 0.103 3.897 12 C -0.454 4.454 13 H 0.079 0.921 14 C 0.072 3.928 15 N -0.793 5.793 16 Si 0.912 3.088 17 H -0.267 1.267 18 H -0.277 1.277 19 H -0.262 1.262 20 C -0.207 4.207 21 C -0.106 4.106 22 C -0.219 4.219 23 C 0.190 3.810 24 F -0.130 7.130 25 H 0.136 0.864 26 H 0.134 0.866 27 H 0.402 0.598 28 H 0.096 0.904 29 H 0.125 0.875 30 H 0.283 0.717 31 H 0.097 0.903 32 H 0.092 0.908 33 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.435 -9.471 1.211 9.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.116 5.116 2 C -0.044 4.044 3 C -0.152 4.152 4 C -0.021 4.021 5 C -0.234 4.234 6 C 0.160 3.840 7 N -0.264 5.264 8 C -0.094 4.094 9 C -0.137 4.137 10 C -0.161 4.161 11 C 0.100 3.900 12 C -0.483 4.483 13 H 0.097 0.903 14 C -0.146 4.146 15 N -0.418 5.418 16 Si 0.737 3.263 17 H -0.192 1.192 18 H -0.202 1.202 19 H -0.186 1.186 20 C -0.227 4.227 21 C -0.127 4.127 22 C -0.242 4.242 23 C 0.167 3.833 24 F -0.108 7.108 25 H 0.154 0.846 26 H 0.152 0.848 27 H 0.238 0.762 28 H 0.114 0.886 29 H 0.142 0.858 30 H 0.094 0.906 31 H 0.116 0.884 32 H 0.110 0.890 33 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -3.300 -9.086 1.157 9.735 hybrid contribution 0.882 0.698 -0.132 1.133 sum -2.419 -8.387 1.025 8.789 Atomic orbital electron populations 1.81186 1.12039 1.07405 1.11007 1.25433 0.92372 0.93675 0.92928 1.15695 0.84560 0.94525 1.20433 1.20606 0.93235 0.95458 0.92782 1.20597 0.93632 0.97899 1.11251 1.17738 0.84340 0.92801 0.89073 1.41759 1.01696 1.11644 1.71307 1.17165 0.95738 0.90522 1.05954 1.20412 0.99552 0.95595 0.98159 1.21037 0.97085 0.95925 1.02074 1.17684 0.91833 0.91847 0.88669 1.19583 0.94996 0.94218 1.39528 0.90274 1.25933 0.94930 1.00467 0.93252 1.69803 1.08185 1.29201 1.34632 0.86236 0.80447 0.79631 0.80021 1.19225 1.20185 1.18597 1.20633 1.01540 0.96851 1.03653 1.20065 0.95109 0.97764 0.99723 1.20908 0.91521 1.01056 1.10704 1.17296 0.89369 0.80254 0.96332 1.91532 1.80333 1.47573 1.91370 0.84610 0.84818 0.76229 0.88554 0.85752 0.90614 0.88445 0.88964 0.82757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -7.20 18.54 41.84 0.78 -6.42 16 2 C 0.27 3.95 14.97 -22.47 -0.34 3.62 16 3 C -0.15 -1.91 5.75 -106.68 -0.61 -2.53 16 4 C 0.00 0.01 9.74 -39.22 -0.38 -0.38 16 5 C -0.21 -2.25 9.91 -39.43 -0.39 -2.64 16 6 C 0.27 3.70 6.05 -83.83 -0.51 3.19 16 7 N -0.65 -9.34 5.40 -8.30 -0.04 -9.38 16 8 C 0.00 -0.01 5.91 -83.67 -0.49 -0.50 16 9 C -0.12 -2.42 7.62 -39.77 -0.30 -2.72 16 10 C -0.14 -3.33 8.61 -39.26 -0.34 -3.67 16 11 C 0.10 2.48 5.56 -106.80 -0.59 1.89 16 12 C -0.45 -11.13 9.04 -37.89 -0.34 -11.47 16 13 H 0.08 1.86 7.87 -52.49 -0.41 1.45 16 14 C 0.07 1.69 5.23 -17.34 -0.09 1.60 16 15 N -0.79 -19.31 10.84 55.54 0.60 -18.71 16 16 Si 0.91 17.66 29.58 -169.99 -5.03 12.63 16 17 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 18 H -0.28 -5.30 7.11 56.52 0.40 -4.90 16 19 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 20 C -0.21 -4.50 9.74 -39.27 -0.38 -4.89 16 21 C -0.11 -2.04 9.89 -39.77 -0.39 -2.43 16 22 C -0.22 -3.40 7.79 -39.36 -0.31 -3.70 16 23 C 0.19 2.85 7.27 -39.00 -0.28 2.57 16 24 F -0.13 -2.14 16.81 2.25 0.04 -2.11 16 25 H 0.14 1.04 8.06 -52.48 -0.42 0.61 16 26 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 27 H 0.40 4.61 8.87 -40.82 -0.36 4.24 16 28 H 0.10 1.88 6.55 -52.49 -0.34 1.54 16 29 H 0.12 3.09 6.18 -52.48 -0.32 2.76 16 30 H 0.28 6.33 8.30 -40.82 -0.34 5.99 16 31 H 0.10 2.00 8.06 -52.49 -0.42 1.58 16 32 H 0.09 1.51 8.06 -52.49 -0.42 1.09 16 33 H 0.15 2.78 6.25 -52.49 -0.33 2.45 16 LS Contribution 301.81 15.07 4.55 4.55 Total: -1.00 -25.91 301.81 -7.46 -33.37 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -2.60 Total: 8.12 kcal Atomic # 6 Polarization: -16.29 SS G_CDS: -5.76 Total: -22.05 kcal Atomic # 7 Polarization: -35.85 SS G_CDS: 1.33 Total: -34.51 kcal Atomic # 9 Polarization: -2.14 SS G_CDS: 0.04 Total: -2.11 kcal Atomic # 14 Polarization: 17.66 SS G_CDS: -5.03 Total: 12.63 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -25.91 -7.46 -33.37 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204062082.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.115 kcal (2) G-P(sol) polarization free energy of solvation -25.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds