Wall clock time and date at job start Tue Mar 31 2020 05:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39869 * 120.09824 * 10.73326 * 3 2 1 5 5 C 1.37563 * 119.95489 * 179.71409 * 4 3 2 6 6 C 1.39307 * 120.13619 * 0.56367 * 5 4 3 7 7 N 1.39142 * 119.90848 * 179.73798 * 6 5 4 8 8 C 1.38841 * 119.99974 * 155.21431 * 7 6 5 9 9 C 1.39593 * 119.84116 * 327.79175 * 8 7 6 10 10 C 1.36320 * 120.15276 * 179.71974 * 9 8 7 11 11 C 1.40902 * 119.83972 * 0.54905 * 10 9 8 12 12 C 1.41100 * 120.15307 * 179.70100 * 11 10 9 13 13 H 1.08002 * 120.00171 * 207.70192 * 12 11 10 14 14 C 1.39856 * 120.00243 * 27.70342 * 12 11 10 15 15 N 1.30913 * 120.00042 * 12.23290 * 14 12 11 16 16 Si 1.86803 * 120.00362 * 192.23069 * 14 12 11 17 17 H 1.48499 * 109.47000 * 89.99960 * 16 14 12 18 18 H 1.48498 * 109.47399 * 209.99868 * 16 14 12 19 19 H 1.48495 * 109.46925 * 330.00490 * 16 14 12 20 20 C 1.40902 * 119.69359 * 359.72039 * 11 10 9 21 21 C 1.36314 * 119.83740 * 0.02562 * 20 11 10 22 22 C 1.39097 * 120.18256 * 359.71206 * 6 5 4 23 23 C 1.37963 * 120.04573 * 0.02562 * 22 6 5 24 24 F 1.35094 * 120.06852 * 179.97438 * 23 22 6 25 25 H 1.08005 * 120.01725 * 359.97275 * 4 3 2 26 26 H 1.07995 * 119.93232 * 180.27338 * 5 4 3 27 27 H 0.97001 * 119.99877 * 335.21254 * 7 6 5 28 28 H 1.07999 * 119.92499 * 359.97438 * 9 8 7 29 29 H 1.08003 * 120.08059 * 180.24891 * 10 9 8 30 30 H 0.96997 * 119.99803 * 180.02562 * 15 14 12 31 31 H 1.07999 * 120.08296 * 179.97438 * 20 11 10 32 32 H 1.07998 * 119.92207 * 179.97438 * 21 20 11 33 33 H 1.08000 * 119.97722 * 180.02562 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2700 -1.1880 -0.2254 5 6 4.6456 -1.1829 -0.2306 6 6 5.3415 0.0017 -0.0002 7 7 6.7329 0.0004 -0.0011 8 6 7.4280 1.1676 -0.2876 9 6 6.8884 2.0964 -1.1791 10 6 7.5627 3.2472 -1.4606 11 6 8.8127 3.4925 -0.8582 12 6 9.5193 4.6785 -1.1498 13 1 10.5972 4.6951 -1.0836 14 6 8.8240 5.8327 -1.5244 15 7 7.5246 5.8912 -1.3761 16 14 9.7493 7.2910 -2.2362 17 1 9.8242 7.1566 -3.7132 18 1 9.0369 8.5468 -1.8889 19 1 11.1226 7.3288 -1.6725 20 6 9.3539 2.5479 0.0363 21 6 8.6661 1.4039 0.3126 22 6 4.6492 1.1860 0.2303 23 6 3.2696 1.1905 0.2318 24 9 2.5967 2.3403 0.4561 25 1 2.7322 -2.1084 -0.3993 26 1 5.1872 -2.1000 -0.4090 27 1 7.2172 -0.8160 0.1985 28 1 5.9324 1.9048 -1.6437 29 1 7.1423 3.9668 -2.1474 30 1 7.0424 6.6916 -1.6363 31 1 10.3116 2.7294 0.5012 32 1 9.0798 0.6787 0.9976 33 1 5.1920 2.1025 0.4082 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001204062082.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:15 Heat of formation + Delta-G solvation = 18.648519 kcal Electronic energy + Delta-G solvation = -20106.889335 eV Core-core repulsion = 16818.046306 eV Total energy + Delta-G solvation = -3288.843029 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.08340 -40.95885 -39.36548 -37.74188 -36.47742 -34.89432 -31.96893 -31.67293 -31.23642 -29.93685 -26.74479 -24.41171 -24.01182 -22.73043 -22.06922 -20.09822 -19.26131 -18.86282 -18.30013 -17.16377 -16.87805 -16.80755 -16.49519 -15.81757 -15.32767 -15.13781 -14.84005 -14.77157 -14.54317 -14.35437 -14.02531 -13.91577 -13.63173 -13.54871 -13.11748 -13.04548 -12.80782 -12.61549 -12.39012 -12.23607 -11.75276 -11.58448 -11.21047 -10.91192 -9.90267 -9.55128 -9.43407 -8.60200 -8.25653 -6.21320 -0.26449 0.25905 0.96274 1.14876 1.40353 1.50504 1.52756 1.59180 1.94129 2.22502 2.45876 2.72894 2.85690 2.90701 3.17845 3.74650 3.80852 4.15390 4.27141 4.38730 4.44437 4.58050 4.88718 4.95381 5.04185 5.11959 5.16126 5.22556 5.27517 5.36692 5.54665 5.70477 5.79031 5.93306 6.10711 6.28618 6.44713 6.50611 6.72468 6.92822 6.97399 7.09476 8.37427 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.022454 B = 0.004162 C = 0.003609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.670647 B = 6725.243716 C = 7755.703478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C 0.285 3.715 3 C -0.139 4.139 4 C 0.019 3.981 5 C -0.181 4.181 6 C 0.262 3.738 7 N -0.646 5.646 8 C 0.035 3.965 9 C -0.124 4.124 10 C -0.163 4.163 11 C 0.066 3.934 12 C -0.494 4.494 13 H 0.076 0.924 14 C 0.032 3.968 15 N -0.833 5.833 16 Si 0.979 3.021 17 H -0.264 1.264 18 H -0.273 1.273 19 H -0.257 1.257 20 C -0.215 4.215 21 C -0.110 4.110 22 C -0.235 4.235 23 C 0.173 3.827 24 F -0.147 7.147 25 H 0.179 0.821 26 H 0.178 0.822 27 H 0.423 0.577 28 H 0.103 0.897 29 H 0.100 0.900 30 H 0.285 0.715 31 H 0.104 0.896 32 H 0.131 0.869 33 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.568 -12.948 1.483 13.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.147 5.147 2 C -0.029 4.029 3 C -0.145 4.145 4 C -0.002 4.002 5 C -0.203 4.203 6 C 0.155 3.845 7 N -0.265 5.265 8 C -0.060 4.060 9 C -0.144 4.144 10 C -0.183 4.183 11 C 0.064 3.936 12 C -0.525 4.525 13 H 0.094 0.906 14 C -0.182 4.182 15 N -0.460 5.460 16 Si 0.801 3.199 17 H -0.188 1.188 18 H -0.198 1.198 19 H -0.181 1.181 20 C -0.235 4.235 21 C -0.130 4.130 22 C -0.258 4.258 23 C 0.150 3.850 24 F -0.126 7.126 25 H 0.196 0.804 26 H 0.195 0.805 27 H 0.262 0.738 28 H 0.121 0.879 29 H 0.118 0.882 30 H 0.095 0.905 31 H 0.122 0.878 32 H 0.149 0.851 33 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -3.455 -12.612 1.443 13.156 hybrid contribution 0.730 1.476 -0.125 1.651 sum -2.726 -11.136 1.318 11.540 Atomic orbital electron populations 1.81210 1.13035 1.08423 1.12076 1.25587 0.92500 0.92737 0.92056 1.15856 0.83837 0.94846 1.20001 1.21090 0.93232 0.95629 0.90228 1.21008 0.93585 0.97875 1.07827 1.17921 0.83958 0.93301 0.89363 1.41537 1.01942 1.10889 1.72156 1.17164 0.95169 0.90735 1.02981 1.20488 0.99698 0.95430 0.98774 1.20925 0.97760 0.96837 1.02808 1.17975 0.92587 0.92873 0.90172 1.19783 0.95026 0.95382 1.42263 0.90568 1.26685 0.95588 1.02745 0.93145 1.69888 1.09544 1.30062 1.36522 0.85229 0.79170 0.76324 0.79178 1.18839 1.19773 1.18119 1.20852 1.02061 0.97399 1.03150 1.20393 0.95086 0.97634 0.99909 1.20733 0.91804 1.00879 1.12389 1.17474 0.89354 0.80476 0.97655 1.91489 1.80597 1.48755 1.91721 0.80385 0.80483 0.73818 0.87892 0.88208 0.90482 0.87788 0.85146 0.86076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -14.67 18.54 19.00 0.35 -14.31 16 2 C 0.28 7.71 14.97 88.33 1.32 9.03 16 3 C -0.14 -3.25 5.75 -21.19 -0.12 -3.37 16 4 C 0.02 0.29 9.74 22.51 0.22 0.51 16 5 C -0.18 -2.78 9.91 22.37 0.22 -2.56 16 6 C 0.26 6.28 6.05 38.44 0.23 6.51 16 7 N -0.65 -16.24 5.40 -180.18 -0.97 -17.21 16 8 C 0.03 1.23 5.91 38.69 0.23 1.46 16 9 C -0.12 -5.18 7.62 22.15 0.17 -5.01 16 10 C -0.16 -8.11 8.61 22.47 0.19 -7.91 16 11 C 0.07 3.37 5.56 -21.27 -0.12 3.25 16 12 C -0.49 -25.62 9.04 23.36 0.21 -25.41 16 13 H 0.08 3.79 7.87 -2.91 -0.02 3.77 16 14 C 0.03 1.57 5.23 85.22 0.45 2.02 16 15 N -0.83 -43.25 10.84 21.81 0.24 -43.01 16 16 Si 0.98 37.77 29.58 68.60 2.03 39.80 16 17 H -0.26 -9.87 7.11 99.48 0.71 -9.17 16 18 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16 19 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16 20 C -0.21 -9.44 9.74 22.47 0.22 -9.22 16 21 C -0.11 -4.03 9.89 22.15 0.22 -3.81 16 22 C -0.23 -7.09 7.79 22.41 0.17 -6.92 16 23 C 0.17 5.04 7.27 22.65 0.16 5.20 16 24 F -0.15 -4.98 16.81 44.97 0.76 -4.22 16 25 H 0.18 1.41 8.06 -2.91 -0.02 1.38 16 26 H 0.18 1.37 8.06 -2.91 -0.02 1.35 16 27 H 0.42 7.49 8.87 -92.71 -0.82 6.67 16 28 H 0.10 4.09 6.55 -2.91 -0.02 4.07 16 29 H 0.10 5.36 6.18 -2.91 -0.02 5.34 16 30 H 0.28 13.58 8.30 -92.71 -0.77 12.81 16 31 H 0.10 4.31 8.06 -2.91 -0.02 4.29 16 32 H 0.13 3.77 8.06 -2.91 -0.02 3.74 16 33 H 0.12 4.52 6.25 -2.91 -0.02 4.50 16 Total: -1.00 -61.35 301.81 6.54 -54.81 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: 0.36 Total: 20.38 kcal Atomic # 6 Polarization: -40.01 SS G_CDS: 3.78 Total: -36.23 kcal Atomic # 7 Polarization: -74.15 SS G_CDS: -0.38 Total: -74.54 kcal Atomic # 9 Polarization: -4.98 SS G_CDS: 0.76 Total: -4.22 kcal Atomic # 14 Polarization: 37.77 SS G_CDS: 2.03 Total: 39.80 kcal Total: -61.35 6.54 -54.81 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204062082.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.461 kcal (2) G-P(sol) polarization free energy of solvation -61.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds