Wall clock time and date at job start Tue Mar 31 2020 05:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86801 * 119.99801 * 2 1 4 4 H 1.48502 * 109.46927 * 240.00154 * 3 2 1 5 5 H 1.48497 * 109.47112 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47295 * 119.99902 * 3 2 1 7 7 C 1.39952 * 120.00554 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00344 * 197.99809 * 7 2 1 9 9 C 1.40907 * 119.99700 * 17.99401 * 7 2 1 10 10 C 1.41001 * 120.10043 * 24.75095 * 9 7 2 11 11 C 1.36132 * 119.89945 * 180.02562 * 10 9 7 12 12 C 1.40165 * 120.09639 * 0.02562 * 11 10 9 13 13 C 1.47542 * 119.89590 * 179.97438 * 12 11 10 14 14 C 1.39148 * 120.26358 * 309.97422 * 13 12 11 15 15 C 1.38390 * 120.38156 * 180.02562 * 14 13 12 16 16 C 1.38166 * 120.75480 * 359.97438 * 15 14 13 17 17 F 1.35099 * 119.92350 * 180.02562 * 16 15 14 18 18 C 1.39510 * 120.15020 * 0.04663 * 16 15 14 19 19 N 1.37229 * 133.62220 * 180.02562 * 18 16 15 20 20 H 0.97000 * 125.98818 * 359.92078 * 19 18 16 21 21 N 1.40033 * 108.01526 * 179.97438 * 19 18 16 22 22 C 1.30309 * 109.67036 * 359.97438 * 21 19 18 23 23 C 1.40551 * 119.78500 * 359.95231 * 18 16 15 24 24 C 1.40160 * 120.20625 * 0.25386 * 12 11 10 25 25 C 1.36135 * 120.09983 * 359.47970 * 24 12 11 26 26 H 0.97001 * 120.00071 * 0.02562 * 1 2 3 27 27 H 1.08005 * 120.05018 * 0.02562 * 10 9 7 28 28 H 1.07994 * 119.95058 * 180.02562 * 11 10 9 29 29 H 1.07996 * 119.80840 * 0.05256 * 14 13 12 30 30 H 1.07998 * 119.62444 * 180.02562 * 15 14 13 31 31 H 1.07999 * 125.64927 * 180.27369 * 22 21 19 32 32 H 1.07993 * 119.94775 * 179.72483 * 24 12 11 33 33 H 1.07996 * 120.05252 * 180.27715 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.0960 1.6964 -1.2125 5 1 1.2772 2.7464 -0.0006 6 1 3.0960 1.6965 1.2125 7 6 2.0082 -1.2119 0.0005 8 1 3.0485 -1.2347 0.2895 9 6 1.3554 -2.4026 -0.3759 10 6 0.2284 -2.3541 -1.2220 11 6 -0.3994 -3.5069 -1.5827 12 6 0.0725 -4.7406 -1.1138 13 6 -0.6117 -5.9872 -1.5071 14 6 -1.9921 -6.1015 -1.3743 15 6 -2.6363 -7.2698 -1.7420 16 6 -1.9239 -8.3408 -2.2463 17 9 -2.5699 -9.4732 -2.6004 18 6 -0.5388 -8.2556 -2.3904 19 7 0.4205 -9.1234 -2.8484 20 1 0.2657 -10.0234 -3.1753 21 7 1.6623 -8.4822 -2.7599 22 6 1.5030 -7.2825 -2.2768 23 6 0.1302 -7.0759 -2.0216 24 6 1.1888 -4.7933 -0.2679 25 6 1.8262 -3.6460 0.0936 26 1 -0.4850 0.8400 -0.0004 27 1 -0.1361 -1.4038 -1.5833 28 1 -1.2624 -3.4707 -2.2309 29 1 -2.5641 -5.2734 -0.9826 30 1 -3.7082 -7.3450 -1.6341 31 1 2.2903 -6.5635 -2.1047 32 1 1.5462 -5.7458 0.0944 33 1 2.6890 -3.6879 0.7418 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205338075.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:09 Heat of formation + Delta-G solvation = 50.907704 kcal Electronic energy + Delta-G solvation = -20329.424174 eV Core-core repulsion = 17041.980008 eV Total energy + Delta-G solvation = -3287.444166 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.63410 -41.14017 -37.94516 -36.47019 -34.00740 -32.17761 -30.53762 -29.89168 -29.26886 -28.27580 -25.21807 -22.95859 -22.33584 -21.39608 -20.86339 -20.25029 -17.95360 -17.50536 -17.01101 -15.81198 -15.62742 -15.54491 -15.15098 -14.58953 -14.25766 -14.04148 -13.69901 -13.51423 -13.08129 -12.81010 -12.41948 -12.11340 -11.77603 -11.48175 -11.44838 -11.18571 -11.05361 -10.83549 -10.66652 -10.56403 -10.03965 -9.84808 -9.53260 -9.32544 -8.52084 -7.88111 -7.69729 -7.15955 -6.97789 -4.51713 0.92707 1.61073 2.58551 2.68501 2.79574 2.96198 2.97977 3.01594 3.07513 3.77096 3.94835 4.41126 4.45502 4.82807 4.90248 5.13703 5.28690 5.46943 5.55554 5.87953 5.93657 6.13345 6.20598 6.35170 6.40200 6.59137 6.75459 6.81830 6.89209 7.02590 7.12703 7.19412 7.36171 7.45963 7.68022 7.75776 7.87723 7.95325 8.09752 8.43771 8.67002 8.78339 9.93600 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.033978 B = 0.003898 C = 0.003588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.855527 B = 7181.931497 C = 7802.448925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.777 5.777 2 C 0.075 3.925 3 Si 0.911 3.089 4 H -0.261 1.261 5 H -0.276 1.276 6 H -0.263 1.263 7 C -0.447 4.447 8 H 0.082 0.918 9 C 0.121 3.879 10 C -0.172 4.172 11 C -0.067 4.067 12 C -0.218 4.218 13 C 0.099 3.901 14 C -0.160 4.160 15 C -0.082 4.082 16 C 0.022 3.978 17 F -0.152 7.152 18 C 0.106 3.894 19 N -0.510 5.510 20 H 0.439 0.561 21 N -0.265 5.265 22 C 0.095 3.905 23 C -0.161 4.161 24 C -0.057 4.057 25 C -0.230 4.230 26 H 0.286 0.714 27 H 0.119 0.881 28 H 0.091 0.909 29 H 0.135 0.865 30 H 0.135 0.865 31 H 0.196 0.804 32 H 0.091 0.909 33 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.444 -7.858 -2.902 8.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.400 5.400 2 C -0.146 4.146 3 Si 0.735 3.265 4 H -0.186 1.186 5 H -0.201 1.201 6 H -0.188 1.188 7 C -0.474 4.474 8 H 0.100 0.900 9 C 0.118 3.882 10 C -0.192 4.192 11 C -0.086 4.086 12 C -0.219 4.219 13 C 0.096 3.904 14 C -0.180 4.180 15 C -0.103 4.103 16 C -0.001 4.001 17 F -0.131 7.131 18 C -0.012 4.012 19 N -0.225 5.225 20 H 0.283 0.717 21 N -0.080 5.080 22 C -0.100 4.100 23 C -0.169 4.169 24 C -0.075 4.075 25 C -0.250 4.250 26 H 0.097 0.903 27 H 0.137 0.863 28 H 0.109 0.891 29 H 0.153 0.847 30 H 0.153 0.847 31 H 0.213 0.787 32 H 0.109 0.891 33 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.796 -8.611 -3.348 9.412 hybrid contribution -0.562 0.613 0.132 0.842 sum -2.358 -7.998 -3.216 8.937 Atomic orbital electron populations 1.69813 1.07755 1.29954 1.32504 1.26016 0.94790 1.01713 0.92051 0.86302 0.80213 0.79730 0.80248 1.18562 1.20127 1.18772 1.19670 0.98411 0.91398 1.37968 0.89977 1.17728 0.90727 0.92069 0.87678 1.20969 0.99815 0.96932 1.01446 1.20456 0.97791 0.91889 0.98471 1.17937 1.02428 0.90269 1.11295 1.18645 0.91742 0.91183 0.88799 1.20950 0.93799 0.97716 1.05501 1.20851 0.99966 0.91913 0.97609 1.16477 0.86272 0.85398 1.11971 1.91414 1.81551 1.49251 1.90848 1.18738 0.90027 0.92381 1.00007 1.45985 1.02504 1.15452 1.58528 0.71714 1.76755 1.02565 1.08506 1.20127 1.23970 0.96008 0.93742 0.96283 1.18839 0.93413 0.94741 1.09911 1.20318 0.93961 0.96701 0.96553 1.20651 1.04135 0.92858 1.07329 0.90331 0.86344 0.89055 0.84688 0.84698 0.78691 0.89103 0.88657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.48 10.96 55.55 0.61 -17.87 16 2 C 0.07 1.72 5.13 -17.34 -0.09 1.63 16 3 Si 0.91 17.17 29.60 -169.99 -5.03 12.14 16 4 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 5 H -0.28 -5.09 7.11 56.52 0.40 -4.69 16 6 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 7 C -0.45 -10.87 9.02 -37.93 -0.34 -11.21 16 8 H 0.08 1.91 7.91 -52.49 -0.42 1.49 16 9 C 0.12 2.95 5.57 -106.79 -0.60 2.36 16 10 C -0.17 -4.10 8.62 -39.29 -0.34 -4.44 16 11 C -0.07 -1.44 9.43 -39.62 -0.37 -1.82 16 12 C -0.22 -4.40 5.43 -104.66 -0.57 -4.97 16 13 C 0.10 1.78 5.49 -104.55 -0.57 1.21 16 14 C -0.16 -2.55 9.48 -39.19 -0.37 -2.92 16 15 C -0.08 -1.17 9.97 -39.55 -0.39 -1.56 16 16 C 0.02 0.34 7.32 -39.13 -0.29 0.05 16 17 F -0.15 -2.21 17.27 2.25 0.04 -2.18 16 18 C 0.11 1.71 7.30 -84.10 -0.61 1.10 16 19 N -0.51 -7.48 7.45 32.39 0.24 -7.24 16 20 H 0.44 5.07 8.96 -182.65 -1.64 3.44 16 21 N -0.26 -4.21 12.58 30.81 0.39 -3.82 16 22 C 0.10 1.54 11.17 -17.09 -0.19 1.35 16 23 C -0.16 -2.78 5.88 -106.71 -0.63 -3.41 16 24 C -0.06 -1.16 8.65 -39.62 -0.34 -1.51 16 25 C -0.23 -5.15 9.73 -39.29 -0.38 -5.53 16 26 H 0.29 6.17 8.30 -40.82 -0.34 5.83 16 27 H 0.12 2.91 6.16 -52.48 -0.32 2.59 16 28 H 0.09 1.78 8.03 -52.49 -0.42 1.36 16 29 H 0.14 2.03 8.03 -52.49 -0.42 1.61 16 30 H 0.14 1.53 8.06 -52.49 -0.42 1.11 16 31 H 0.20 2.86 7.66 -52.49 -0.40 2.46 16 32 H 0.09 1.67 7.82 -52.49 -0.41 1.26 16 33 H 0.10 2.00 8.06 -52.49 -0.42 1.58 16 LS Contribution 296.35 15.07 4.47 4.47 Total: -1.00 -25.77 296.35 -9.39 -35.16 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -4.01 Total: 9.01 kcal Atomic # 6 Polarization: -23.58 SS G_CDS: -6.09 Total: -29.67 kcal Atomic # 7 Polarization: -30.17 SS G_CDS: 1.24 Total: -28.93 kcal Atomic # 9 Polarization: -2.21 SS G_CDS: 0.04 Total: -2.18 kcal Atomic # 14 Polarization: 17.17 SS G_CDS: -5.03 Total: 12.14 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -25.77 -9.39 -35.16 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205338075.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.071 kcal (2) G-P(sol) polarization free energy of solvation -25.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds