Wall clock time and date at job start Tue Mar 31 2020 05:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30811 * 1 3 3 Si 1.86802 * 119.99886 * 2 1 4 4 H 1.48498 * 109.47467 * 270.00669 * 3 2 1 5 5 H 1.48500 * 109.46890 * 30.00517 * 3 2 1 6 6 H 1.48495 * 109.47082 * 150.00296 * 3 2 1 7 7 C 1.39982 * 120.00176 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00296 * 197.97410 * 7 2 1 9 9 C 1.40989 * 120.00023 * 17.96538 * 7 2 1 10 10 C 1.40953 * 120.10959 * 204.70543 * 9 7 2 11 11 C 1.36207 * 119.87904 * 180.23348 * 10 9 7 12 12 C 1.40014 * 120.11610 * 359.49702 * 11 10 9 13 13 C 1.47859 * 119.88707 * 180.23224 * 12 11 10 14 14 C 1.39161 * 119.85223 * 0.27126 * 13 12 11 15 15 C 1.38895 * 119.65532 * 179.97438 * 14 13 12 16 16 N 1.37269 * 133.65282 * 180.02562 * 15 14 13 17 17 H 0.97000 * 125.98075 * 359.97438 * 16 15 14 18 18 N 1.40020 * 108.04683 * 180.02562 * 16 15 14 19 19 C 1.30208 * 109.78663 * 0.02562 * 18 16 15 20 20 C 1.40932 * 119.77116 * 0.02562 * 15 14 13 21 21 C 1.40495 * 119.76220 * 359.97438 * 20 15 14 22 22 F 1.35103 * 120.00069 * 180.02562 * 21 20 15 23 23 C 1.36271 * 120.00213 * 359.74289 * 21 20 15 24 24 C 1.40011 * 120.22516 * 0.51153 * 12 11 10 25 25 C 1.36204 * 120.11322 * 359.74270 * 24 12 11 26 26 H 0.97002 * 120.00234 * 359.97438 * 1 2 3 27 27 H 1.07997 * 120.06480 * 359.95900 * 10 9 7 28 28 H 1.08001 * 119.94114 * 179.75133 * 11 10 9 29 29 H 1.07994 * 120.17450 * 0.02562 * 14 13 12 30 30 H 1.08000 * 125.63302 * 180.02562 * 19 18 16 31 31 H 1.08001 * 119.74838 * 180.26920 * 23 21 20 32 32 H 1.08002 * 119.94206 * 179.73028 * 24 12 11 33 33 H 1.08003 * 120.05426 * 179.97438 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 2.4895 2.0466 -1.4000 5 1 1.4395 2.6526 0.7002 6 1 3.5396 1.4402 0.7000 7 6 2.0081 -1.2123 -0.0005 8 1 3.0485 -1.2352 0.2881 9 6 1.3547 -2.4033 -0.3777 10 6 1.8269 -3.6469 0.0885 11 6 1.1950 -4.7951 -0.2826 12 6 0.0720 -4.7407 -1.1171 13 6 -0.6132 -5.9898 -1.5127 14 6 -0.1424 -7.2147 -1.0493 15 6 -0.7895 -8.3855 -1.4231 16 7 -0.5812 -9.7135 -1.1449 17 1 0.1246 -10.0748 -0.5861 18 7 -1.5649 -10.4555 -1.8100 19 6 -2.3503 -9.6540 -2.4704 20 6 -1.9158 -8.3235 -2.2679 21 6 -2.3765 -7.0777 -2.7258 22 9 -3.4561 -7.0127 -3.5354 23 6 -1.7379 -5.9345 -2.3485 24 6 -0.4009 -3.5080 -1.5830 25 6 0.2270 -2.3545 -1.2219 26 1 -0.4850 0.8400 0.0004 27 1 2.6907 -3.6898 0.7352 28 1 1.5583 -5.7488 0.0707 29 1 0.7209 -7.2547 -0.4019 30 1 -3.1950 -9.9554 -3.0721 31 1 -2.0982 -4.9787 -2.6994 32 1 -1.2649 -3.4717 -2.2300 33 1 -0.1383 -1.4041 -1.5822 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206571933.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:55 Heat of formation + Delta-G solvation = 51.095334 kcal Electronic energy + Delta-G solvation = -20087.500296 eV Core-core repulsion = 16800.064266 eV Total energy + Delta-G solvation = -3287.436030 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -48.66581 -41.09556 -38.24448 -36.38732 -33.95630 -32.11840 -31.00272 -30.00719 -28.96298 -28.39956 -25.45396 -22.96106 -22.44753 -21.47457 -20.67065 -20.24714 -17.93186 -17.65265 -16.81569 -15.95544 -15.52900 -15.39357 -15.14524 -14.95773 -14.32261 -14.18393 -13.89574 -13.45748 -12.99881 -12.69426 -12.38742 -12.21889 -11.99418 -11.53728 -11.34346 -11.27414 -11.05357 -10.77548 -10.75434 -10.61739 -10.07244 -9.94746 -9.56308 -9.43957 -8.63801 -7.83587 -7.78497 -7.23023 -7.05674 -4.59876 0.92617 1.65676 2.42024 2.75671 2.83206 2.90870 2.94087 2.96235 3.08271 3.68876 3.98136 4.41116 4.49062 4.83968 4.90736 5.12246 5.29075 5.49423 5.57362 5.77172 5.95640 6.02558 6.22222 6.33522 6.42312 6.52421 6.62901 6.72279 6.80391 7.00837 7.11226 7.17262 7.36085 7.42720 7.67255 7.69245 7.78318 7.91062 7.99100 8.33350 8.54964 8.67801 9.81276 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.036907 B = 0.003574 C = 0.003290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.485403 B = 7831.710696 C = 8509.809570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.072 3.928 3 Si 0.915 3.085 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.259 1.259 7 C -0.436 4.436 8 H 0.085 0.915 9 C 0.122 3.878 10 C -0.232 4.232 11 C -0.051 4.051 12 C -0.218 4.218 13 C 0.105 3.895 14 C -0.203 4.203 15 C 0.175 3.825 16 N -0.514 5.514 17 H 0.439 0.561 18 N -0.273 5.273 19 C 0.089 3.911 20 C -0.253 4.253 21 C 0.178 3.822 22 F -0.140 7.140 23 C -0.202 4.202 24 C -0.066 4.066 25 C -0.174 4.174 26 H 0.288 0.712 27 H 0.097 0.903 28 H 0.095 0.905 29 H 0.128 0.872 30 H 0.188 0.812 31 H 0.138 0.862 32 H 0.096 0.904 33 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.651 -7.732 -2.512 8.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.391 5.391 2 C -0.149 4.149 3 Si 0.738 3.262 4 H -0.189 1.189 5 H -0.200 1.200 6 H -0.183 1.183 7 C -0.464 4.464 8 H 0.103 0.897 9 C 0.119 3.881 10 C -0.251 4.251 11 C -0.070 4.070 12 C -0.220 4.220 13 C 0.102 3.898 14 C -0.226 4.226 15 C 0.058 3.942 16 N -0.229 5.229 17 H 0.284 0.716 18 N -0.088 5.088 19 C -0.106 4.106 20 C -0.262 4.262 21 C 0.156 3.844 22 F -0.119 7.119 23 C -0.222 4.222 24 C -0.084 4.084 25 C -0.193 4.193 26 H 0.099 0.901 27 H 0.115 0.885 28 H 0.113 0.887 29 H 0.146 0.854 30 H 0.205 0.795 31 H 0.156 0.844 32 H 0.114 0.886 33 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -1.665 -8.833 -2.217 9.258 hybrid contribution 0.275 1.419 0.036 1.446 sum -1.390 -7.414 -2.180 7.852 Atomic orbital electron populations 1.69812 1.07856 1.30206 1.31263 1.26095 0.94856 1.01981 0.92014 0.86184 0.80526 0.79738 0.79723 1.18863 1.19953 1.18272 1.19829 0.98473 0.91333 1.36726 0.89656 1.17792 0.90630 0.92150 0.87523 1.20696 1.04376 0.92768 1.07295 1.20419 0.94184 0.96790 0.95573 1.17928 1.02197 0.90344 1.11501 1.18503 0.89975 0.92423 0.88924 1.19992 1.04706 0.88562 1.09334 1.18514 0.94592 0.86024 0.95086 1.45978 1.28618 1.02285 1.45988 0.71594 1.76599 1.00798 1.20439 1.10933 1.23677 0.98970 0.89550 0.98421 1.18628 1.03206 0.93396 1.10950 1.16668 0.84525 0.92305 0.90936 1.91457 1.52673 1.97228 1.70535 1.20758 0.99428 0.97311 1.04745 1.20564 0.97725 0.92237 0.97914 1.21004 0.99661 0.97087 1.01565 0.90103 0.88515 0.88717 0.85378 0.79507 0.84401 0.88649 0.86216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.00 10.96 55.55 0.61 -17.39 16 2 C 0.07 1.63 5.13 -17.33 -0.09 1.54 16 3 Si 0.91 16.79 29.60 -169.99 -5.03 11.76 16 4 H -0.26 -4.81 7.11 56.52 0.40 -4.41 16 5 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16 6 H -0.26 -4.71 7.11 56.52 0.40 -4.30 16 7 C -0.44 -10.46 9.03 -37.89 -0.34 -10.80 16 8 H 0.09 1.95 7.91 -52.49 -0.42 1.53 16 9 C 0.12 2.97 5.57 -106.80 -0.60 2.38 16 10 C -0.23 -5.19 9.73 -39.28 -0.38 -5.57 16 11 C -0.05 -1.06 9.35 -39.65 -0.37 -1.43 16 12 C -0.22 -4.52 5.90 -104.63 -0.62 -5.14 16 13 C 0.10 1.93 5.88 -104.86 -0.62 1.31 16 14 C -0.20 -3.38 9.45 -39.00 -0.37 -3.75 16 15 C 0.17 2.77 7.32 -84.17 -0.62 2.16 16 16 N -0.51 -7.11 7.45 32.35 0.24 -6.86 16 17 H 0.44 4.64 8.96 -182.66 -1.64 3.01 16 18 N -0.27 -3.97 12.57 30.85 0.39 -3.58 16 19 C 0.09 1.25 12.04 -17.03 -0.20 1.04 16 20 C -0.25 -4.06 6.15 -106.82 -0.66 -4.71 16 21 C 0.18 2.91 7.30 -39.44 -0.29 2.62 16 22 F -0.14 -2.17 17.27 2.25 0.04 -2.13 16 23 C -0.20 -3.50 9.31 -39.54 -0.37 -3.87 16 24 C -0.07 -1.42 9.35 -39.65 -0.37 -1.80 16 25 C -0.17 -4.14 8.63 -39.29 -0.34 -4.48 16 26 H 0.29 6.07 8.30 -40.82 -0.34 5.73 16 27 H 0.10 2.01 8.06 -52.49 -0.42 1.59 16 28 H 0.09 1.68 6.15 -52.49 -0.32 1.35 16 29 H 0.13 1.93 6.15 -52.49 -0.32 1.61 16 30 H 0.19 1.94 8.06 -52.49 -0.42 1.52 16 31 H 0.14 2.27 6.13 -52.49 -0.32 1.95 16 32 H 0.10 1.85 6.14 -52.49 -0.32 1.52 16 33 H 0.12 2.92 6.16 -52.48 -0.32 2.60 16 LS Contribution 291.30 15.07 4.39 4.39 Total: -1.00 -25.93 291.30 -9.23 -35.16 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -3.65 Total: 9.15 kcal Atomic # 6 Polarization: -24.26 SS G_CDS: -6.22 Total: -30.48 kcal Atomic # 7 Polarization: -29.08 SS G_CDS: 1.24 Total: -27.84 kcal Atomic # 9 Polarization: -2.17 SS G_CDS: 0.04 Total: -2.13 kcal Atomic # 14 Polarization: 16.79 SS G_CDS: -5.03 Total: 11.76 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -25.93 -9.23 -35.16 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206571933.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.260 kcal (2) G-P(sol) polarization free energy of solvation -25.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds