Wall clock time and date at job start Tue Mar 31 2020 05:09:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30786 * 1 3 3 Si 1.86803 * 119.99989 * 2 1 4 4 H 1.48488 * 109.47332 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46714 * 300.00017 * 3 2 1 6 6 H 1.48495 * 109.47076 * 59.99356 * 3 2 1 7 7 C 1.40050 * 120.00076 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00439 * 163.92080 * 7 2 1 9 9 C 1.40834 * 119.99965 * 343.91196 * 7 2 1 10 10 C 1.40763 * 120.33742 * 333.36739 * 9 7 2 11 11 C 1.36405 * 119.99185 * 180.27621 * 10 9 7 12 12 C 1.38966 * 120.70291 * 359.71970 * 11 10 9 13 13 C 1.38018 * 120.68165 * 359.97438 * 12 11 10 14 14 C 1.39251 * 119.98361 * 0.02562 * 13 12 11 15 15 C 1.47737 * 120.34541 * 180.02562 * 14 13 12 16 16 C 1.39210 * 119.86127 * 309.97375 * 15 14 13 17 17 C 1.38877 * 119.65519 * 180.02562 * 16 15 14 18 18 N 1.37277 * 133.65159 * 180.02562 * 17 16 15 19 19 H 0.97009 * 125.97444 * 359.97438 * 18 17 16 20 20 N 1.40008 * 108.05025 * 180.02562 * 18 17 16 21 21 C 1.30215 * 109.78766 * 359.97438 * 20 18 17 22 22 C 1.40928 * 119.77484 * 359.97438 * 17 16 15 23 23 C 1.40509 * 119.77747 * 0.02562 * 22 17 16 24 24 F 1.35094 * 120.00221 * 180.27840 * 23 22 17 25 25 C 1.36262 * 119.99837 * 0.02562 * 23 22 17 26 26 H 0.96996 * 120.00128 * 0.02562 * 1 2 3 27 27 H 1.08006 * 120.00642 * 359.97438 * 10 9 7 28 28 H 1.08003 * 119.64868 * 179.74239 * 11 10 9 29 29 H 1.08001 * 119.65749 * 180.02562 * 12 11 10 30 30 H 1.08005 * 120.00722 * 180.02562 * 13 12 11 31 31 H 1.08000 * 120.17481 * 0.02562 * 16 15 14 32 32 H 1.07998 * 125.63277 * 180.02562 * 21 20 18 33 33 H 1.07997 * 119.74323 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2419 1.6178 0.0000 4 1 3.7018 1.3465 0.0006 5 1 1.8831 2.3964 -1.2125 6 1 1.8830 2.3965 1.2124 7 6 2.0081 -1.2129 0.0005 8 1 3.0564 -1.2313 -0.2585 9 6 1.3453 -2.4085 0.3391 10 6 0.2193 -2.3827 1.1834 11 6 -0.4138 -3.5456 1.5113 12 6 0.0367 -4.7630 1.0154 13 6 1.1341 -4.8206 0.1803 14 6 1.8020 -3.6509 -0.1728 15 6 2.9772 -3.7032 -1.0666 16 6 4.0131 -4.5936 -0.7981 17 6 5.1160 -4.6388 -1.6409 18 7 6.2698 -5.3826 -1.6525 19 1 6.5166 -6.0616 -1.0051 20 7 7.0285 -4.9891 -2.7615 21 6 6.4004 -4.0551 -3.4163 22 6 5.1773 -3.7844 -2.7599 23 6 4.1223 -2.8921 -3.0151 24 9 4.1737 -2.0750 -4.0897 25 6 3.0450 -2.8547 -2.1817 26 1 -0.4850 0.8400 -0.0004 27 1 -0.1403 -1.4428 1.5756 28 1 -1.2748 -3.5198 2.1629 29 1 -0.4776 -5.6734 1.2856 30 1 1.4747 -5.7727 -0.1992 31 1 3.9594 -5.2458 0.0610 32 1 6.7545 -3.5684 -4.3129 33 1 2.2366 -2.1670 -2.3815 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206579798.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:57 Heat of formation + Delta-G solvation = 51.842145 kcal Electronic energy + Delta-G solvation = -20868.325343 eV Core-core repulsion = 17580.921697 eV Total energy + Delta-G solvation = -3287.403645 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -48.43993 -41.00298 -38.17057 -36.09434 -33.87766 -32.01795 -31.06063 -29.81123 -28.89240 -27.85775 -25.44067 -22.98619 -22.22482 -21.34650 -20.91066 -19.95100 -17.84610 -17.30357 -16.73268 -15.59945 -15.44647 -15.30115 -15.01950 -14.77763 -14.29128 -14.20490 -13.88230 -13.48395 -12.79661 -12.65564 -12.59623 -11.80696 -11.55851 -11.39662 -11.26306 -11.12324 -10.93726 -10.82498 -10.67523 -10.53148 -9.95356 -9.75746 -9.60984 -9.35774 -8.34551 -7.68049 -7.54948 -7.31248 -6.93568 -4.53173 1.11488 1.87064 2.55306 2.72680 2.88902 2.98411 3.00776 3.06523 3.12393 3.81479 4.14351 4.47147 4.57699 4.98109 5.04490 5.22537 5.44978 5.51230 5.80624 5.92005 6.08417 6.22116 6.32014 6.41753 6.48026 6.59003 6.72571 6.86202 7.01809 7.07153 7.24092 7.29069 7.40585 7.52005 7.73187 7.77196 7.86840 7.94285 8.08368 8.43436 8.66797 8.76020 9.96786 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.014923 B = 0.006850 C = 0.005141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.804664 B = 4086.344655 C = 5444.947844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.782 5.782 2 C 0.077 3.923 3 Si 0.904 3.096 4 H -0.257 1.257 5 H -0.271 1.271 6 H -0.270 1.270 7 C -0.446 4.446 8 H 0.085 0.915 9 C 0.135 3.865 10 C -0.156 4.156 11 C -0.097 4.097 12 C -0.243 4.243 13 C -0.063 4.063 14 C -0.202 4.202 15 C 0.108 3.892 16 C -0.181 4.181 17 C 0.161 3.839 18 N -0.512 5.512 19 H 0.439 0.561 20 N -0.272 5.272 21 C 0.086 3.914 22 C -0.237 4.237 23 C 0.158 3.842 24 F -0.141 7.141 25 C -0.159 4.159 26 H 0.284 0.716 27 H 0.119 0.881 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.126 0.874 32 H 0.188 0.812 33 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.526 -3.879 -2.169 7.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.405 5.405 2 C -0.143 4.143 3 Si 0.728 3.272 4 H -0.180 1.180 5 H -0.196 1.196 6 H -0.195 1.195 7 C -0.474 4.474 8 H 0.103 0.897 9 C 0.132 3.868 10 C -0.175 4.175 11 C -0.116 4.116 12 C -0.263 4.263 13 C -0.081 4.081 14 C -0.204 4.204 15 C 0.105 3.895 16 C -0.204 4.204 17 C 0.044 3.956 18 N -0.227 5.227 19 H 0.283 0.717 20 N -0.087 5.087 21 C -0.110 4.110 22 C -0.245 4.245 23 C 0.136 3.864 24 F -0.119 7.119 25 C -0.179 4.179 26 H 0.095 0.905 27 H 0.137 0.863 28 H 0.107 0.893 29 H 0.108 0.892 30 H 0.110 0.890 31 H 0.144 0.856 32 H 0.205 0.795 33 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 6.418 -4.417 -2.193 8.094 hybrid contribution -0.351 1.075 0.141 1.139 sum 6.067 -3.343 -2.052 7.225 Atomic orbital electron populations 1.69791 1.07672 1.29700 1.33381 1.25969 0.94728 1.01527 0.92042 0.86293 0.81329 0.80745 0.78843 1.18050 1.19625 1.19514 1.19675 0.97927 0.90770 1.39068 0.89652 1.17512 0.90387 0.90859 0.88081 1.21059 0.98882 0.97056 1.00499 1.20518 0.98461 0.93362 0.99248 1.20285 1.01874 0.96414 1.07691 1.20567 0.95416 0.95444 0.96673 1.18444 1.00709 0.94326 1.06905 1.18391 0.91597 0.88982 0.90533 1.20199 0.92693 1.05951 1.01552 1.18518 0.89055 0.92468 0.95510 1.45966 1.15202 1.36494 1.25072 0.71661 1.76580 1.18797 1.15504 0.97770 1.23687 0.92052 0.95569 0.99655 1.18696 0.98722 1.05574 1.01530 1.16720 0.94300 0.90012 0.85330 1.91448 1.96568 1.70620 1.53294 1.21017 0.98623 1.02941 0.95315 0.90485 0.86306 0.89317 0.89240 0.88985 0.85611 0.79494 0.83425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.61 10.99 55.55 0.61 -18.00 16 2 C 0.08 1.79 5.16 -17.32 -0.09 1.70 16 3 Si 0.90 17.75 29.59 -169.99 -5.03 12.72 16 4 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 5 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 6 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 7 C -0.45 -10.76 7.09 -37.92 -0.27 -11.03 16 8 H 0.09 2.05 6.66 -52.49 -0.35 1.70 16 9 C 0.13 3.26 5.55 -106.55 -0.59 2.67 16 10 C -0.16 -3.73 8.62 -39.29 -0.34 -4.07 16 11 C -0.10 -2.12 9.96 -39.97 -0.40 -2.52 16 12 C -0.24 -5.05 10.03 -39.39 -0.40 -5.44 16 13 C -0.06 -1.30 9.49 -39.29 -0.37 -1.67 16 14 C -0.20 -4.49 5.51 -104.23 -0.57 -5.06 16 15 C 0.11 2.18 4.92 -104.89 -0.52 1.66 16 16 C -0.18 -3.21 9.53 -38.98 -0.37 -3.58 16 17 C 0.16 2.72 7.32 -84.17 -0.62 2.10 16 18 N -0.51 -7.46 7.45 32.35 0.24 -7.22 16 19 H 0.44 4.90 8.96 -182.66 -1.64 3.27 16 20 N -0.27 -4.16 12.57 30.85 0.39 -3.78 16 21 C 0.09 1.29 12.04 -17.03 -0.20 1.08 16 22 C -0.24 -4.11 6.15 -106.81 -0.66 -4.76 16 23 C 0.16 2.92 7.30 -39.44 -0.29 2.63 16 24 F -0.14 -2.49 17.27 2.25 0.04 -2.45 16 25 C -0.16 -3.18 7.89 -39.52 -0.31 -3.49 16 26 H 0.28 6.15 8.29 -40.82 -0.34 5.81 16 27 H 0.12 2.93 6.25 -52.48 -0.33 2.60 16 28 H 0.09 1.72 8.06 -52.48 -0.42 1.30 16 29 H 0.09 1.64 8.06 -52.49 -0.42 1.21 16 30 H 0.09 1.69 8.04 -52.48 -0.42 1.27 16 31 H 0.13 2.02 8.03 -52.49 -0.42 1.59 16 32 H 0.19 2.16 8.06 -52.49 -0.42 1.73 16 33 H 0.15 3.13 7.30 -52.49 -0.38 2.75 16 LS Contribution 293.45 15.07 4.42 4.42 Total: -1.00 -25.97 293.45 -9.27 -35.24 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -3.94 Total: 8.85 kcal Atomic # 6 Polarization: -23.78 SS G_CDS: -5.99 Total: -29.78 kcal Atomic # 7 Polarization: -30.24 SS G_CDS: 1.24 Total: -29.00 kcal Atomic # 9 Polarization: -2.49 SS G_CDS: 0.04 Total: -2.45 kcal Atomic # 14 Polarization: 17.75 SS G_CDS: -5.03 Total: 12.72 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -25.97 -9.27 -35.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206579798.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.079 kcal (2) G-P(sol) polarization free energy of solvation -25.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds