Wall clock time and date at job start Tue Mar 31 2020 05:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31582 * 1 3 3 Si 1.86809 * 119.99942 * 2 1 4 4 H 1.48497 * 109.46992 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47017 * 299.99995 * 3 2 1 6 6 H 1.48498 * 109.47013 * 60.00194 * 3 2 1 7 7 C 1.38628 * 120.00018 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00068 * 180.02562 * 7 2 1 9 9 O 1.34931 * 120.00264 * 0.02562 * 7 2 1 10 10 C 1.42895 * 117.00359 * 180.02562 * 9 7 2 11 11 H 1.09005 * 109.47087 * 29.99632 * 10 9 7 12 12 C 1.50692 * 109.47499 * 149.99888 * 10 9 7 13 13 O 1.21257 * 119.99953 * 20.57311 * 12 10 9 14 14 C 1.47165 * 120.00298 * 200.57207 * 12 10 9 15 15 C 1.39853 * 120.17063 * 5.68347 * 14 12 10 16 16 C 1.37885 * 119.82343 * 179.81147 * 15 14 12 17 17 C 1.38402 * 120.17306 * 0.44436 * 16 15 14 18 18 C 1.38402 * 120.34896 * 359.78914 * 17 16 15 19 19 C 1.37885 * 120.17224 * 359.97438 * 18 17 16 20 20 C 1.50701 * 109.47011 * 270.00355 * 10 9 7 21 21 C 1.38239 * 119.99544 * 319.83142 * 20 10 9 22 22 C 1.38239 * 119.99752 * 179.78992 * 21 20 10 23 23 C 1.38239 * 119.99883 * 0.44506 * 22 21 20 24 24 C 1.38238 * 119.99981 * 359.81330 * 23 22 21 25 25 C 1.38231 * 120.00450 * 140.11357 * 20 10 9 26 26 H 0.97000 * 120.00195 * 0.02562 * 1 2 3 27 27 H 1.07996 * 120.08882 * 0.02701 * 15 14 12 28 28 H 1.07998 * 119.91454 * 180.20642 * 16 15 14 29 29 H 1.08006 * 119.82817 * 179.75988 * 17 16 15 30 30 H 1.08004 * 119.91396 * 179.97438 * 18 17 16 31 31 H 1.08003 * 120.08747 * 179.97438 * 19 18 17 32 32 H 1.07998 * 120.00067 * 0.02562 * 21 20 10 33 33 H 1.07996 * 120.00370 * 180.27782 * 22 21 20 34 34 H 1.07997 * 119.99699 * 179.83009 * 23 22 21 35 35 H 1.08001 * 120.00008 * 179.97438 * 24 23 22 36 36 H 1.08004 * 119.99937 * 359.97395 * 25 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6178 0.0000 4 1 3.7098 1.3465 -0.0006 5 1 1.8911 2.3965 -1.2125 6 1 1.8911 2.3965 1.2125 7 6 2.0090 -1.2005 -0.0005 8 1 3.0890 -1.2006 -0.0001 9 8 1.3344 -2.3691 -0.0016 10 6 2.1126 -3.5676 -0.0015 11 1 3.0566 -3.3878 0.5131 12 6 1.3538 -4.6593 0.7078 13 8 0.1510 -4.5762 0.8370 14 6 2.0725 -5.8264 1.2436 15 6 3.4697 -5.8711 1.2027 16 6 4.1359 -6.9664 1.7104 17 6 3.4252 -8.0238 2.2510 18 6 2.0422 -7.9893 2.2907 19 6 1.3616 -6.8989 1.7916 20 6 2.3874 -3.9881 -1.4223 21 6 1.3962 -3.8781 -2.3796 22 6 1.6495 -4.2598 -3.6839 23 6 2.8911 -4.7602 -4.0288 24 6 3.8806 -4.8752 -3.0703 25 6 3.6286 -4.4894 -1.7671 26 1 -0.4850 0.8400 -0.0004 27 1 4.0255 -5.0484 0.7778 28 1 5.2150 -7.0009 1.6826 29 1 3.9526 -8.8807 2.6436 30 1 1.4947 -8.8185 2.7139 31 1 0.2823 -6.8736 1.8229 32 1 0.4251 -3.4903 -2.1094 33 1 0.8766 -4.1696 -4.4328 34 1 3.0881 -5.0610 -5.0472 35 1 4.8505 -5.2666 -3.3397 36 1 4.4017 -4.5793 -1.0183 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224378516.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:31 Heat of formation + Delta-G solvation = -10.418325 kcal Electronic energy + Delta-G solvation = -21297.409904 eV Core-core repulsion = 18098.473996 eV Total energy + Delta-G solvation = -3198.935908 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.104 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.00350 -38.66999 -37.73332 -35.99427 -32.43754 -31.46689 -30.93648 -30.53306 -30.39684 -26.90157 -24.47280 -23.41280 -22.51287 -22.00880 -21.21460 -19.30482 -17.88298 -16.94425 -16.50579 -15.83423 -15.58424 -15.10088 -14.91509 -14.33792 -14.10333 -14.07595 -13.78884 -13.56719 -13.37356 -13.02403 -12.84925 -12.30804 -12.19899 -11.77564 -11.64440 -11.36145 -11.24495 -11.07370 -10.85689 -10.59454 -10.29455 -9.93754 -9.42349 -9.07432 -8.98724 -8.90030 -8.47043 -8.20975 -8.06106 -5.97654 -3.64490 0.83113 1.37971 1.75316 1.86693 2.78106 3.29365 3.31877 3.36765 3.90000 4.05592 4.22386 4.47335 4.81665 4.90427 5.00211 5.19243 5.25256 5.34272 5.38459 5.41876 5.43757 5.54567 5.65656 5.79926 5.87373 5.92874 6.04487 6.11907 6.24523 6.35177 6.38190 6.42452 6.49821 6.54563 6.82763 6.89201 6.96763 7.17003 7.42393 7.45494 8.05534 8.37225 9.43414 10.01655 11.21589 Molecular weight = 282.10amu Principal moments of inertia in cm(-1) A = 0.014216 B = 0.006107 C = 0.005057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.150354 B = 4583.991534 C = 5535.100918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.029 3.971 3 Si 0.924 3.076 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.370 4.370 8 H 0.066 0.934 9 O -0.255 6.255 10 C 0.095 3.905 11 H 0.074 0.926 12 C 0.396 3.604 13 O -0.421 6.421 14 C -0.149 4.149 15 C -0.074 4.074 16 C -0.133 4.133 17 C -0.098 4.098 18 C -0.134 4.134 19 C -0.066 4.066 20 C -0.088 4.088 21 C -0.076 4.076 22 C -0.126 4.126 23 C -0.127 4.127 24 C -0.130 4.130 25 C -0.116 4.116 26 H 0.259 0.741 27 H 0.132 0.868 28 H 0.126 0.874 29 H 0.123 0.877 30 H 0.126 0.874 31 H 0.133 0.867 32 H 0.132 0.868 33 H 0.118 0.882 34 H 0.114 0.886 35 H 0.116 0.884 36 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.178 -14.970 -0.711 17.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.170 4.170 3 Si 0.751 3.249 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.448 4.448 8 H 0.084 0.916 9 O -0.169 6.169 10 C 0.034 3.966 11 H 0.091 0.909 12 C 0.270 3.730 13 O -0.292 6.292 14 C -0.150 4.150 15 C -0.092 4.092 16 C -0.151 4.151 17 C -0.117 4.117 18 C -0.152 4.152 19 C -0.084 4.084 20 C -0.089 4.089 21 C -0.094 4.094 22 C -0.144 4.144 23 C -0.145 4.145 24 C -0.148 4.148 25 C -0.134 4.134 26 H 0.069 0.931 27 H 0.150 0.850 28 H 0.144 0.856 29 H 0.141 0.859 30 H 0.144 0.856 31 H 0.151 0.849 32 H 0.150 0.850 33 H 0.136 0.864 34 H 0.133 0.867 35 H 0.134 0.866 36 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 8.170 -14.797 -0.638 16.914 hybrid contribution 0.860 0.902 -0.072 1.248 sum 9.030 -13.895 -0.710 16.586 Atomic orbital electron populations 1.70059 1.05363 1.25936 1.50774 1.24941 0.95642 0.97624 0.98791 0.85910 0.78861 0.82296 0.77792 1.19826 1.20787 1.20786 1.20932 0.90274 0.82236 1.51407 0.91597 1.85856 1.29746 1.09181 1.92144 1.20891 0.95465 0.89167 0.91064 0.90869 1.22590 0.89011 0.85048 0.76302 1.90500 1.16251 1.76012 1.46474 1.20635 0.94585 0.96899 1.02930 1.21612 0.93315 0.98158 0.96150 1.21111 1.00088 0.94072 0.99838 1.21345 0.94318 0.98189 0.97801 1.21107 0.94496 0.98476 1.01135 1.21439 1.00755 0.92049 0.94165 1.20406 0.93898 0.98114 0.96476 1.21157 1.00190 0.95824 0.92274 1.21141 0.97048 0.99861 0.96376 1.21043 0.93850 1.00756 0.98883 1.20954 0.98879 1.01633 0.93326 1.20994 0.96249 0.99705 0.96412 0.93116 0.84989 0.85556 0.85898 0.85641 0.84941 0.84991 0.86418 0.86747 0.86619 0.86561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -27.71 13.67 55.48 0.76 -26.95 16 2 C 0.03 0.86 5.49 -17.51 -0.10 0.77 16 3 Si 0.92 22.04 29.55 -169.99 -5.02 17.01 16 4 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.37 -10.69 9.77 30.88 0.30 -10.38 16 8 H 0.07 1.78 7.65 -52.48 -0.40 1.38 16 9 O -0.26 -7.26 8.37 -35.53 -0.30 -7.56 16 10 C 0.09 2.09 2.09 -29.04 -0.06 2.03 16 11 H 0.07 1.48 6.30 -51.93 -0.33 1.15 16 12 C 0.40 8.29 6.33 -30.69 -0.19 8.10 16 13 O -0.42 -10.23 16.63 -13.44 -0.22 -10.45 16 14 C -0.15 -2.46 5.87 -105.07 -0.62 -3.08 16 15 C -0.07 -1.01 9.02 -39.11 -0.35 -1.36 16 16 C -0.13 -1.45 10.03 -39.65 -0.40 -1.85 16 17 C -0.10 -1.01 10.04 -39.46 -0.40 -1.40 16 18 C -0.13 -1.52 10.03 -39.65 -0.40 -1.92 16 19 C -0.07 -0.96 9.60 -39.11 -0.38 -1.33 16 20 C -0.09 -1.75 4.92 -104.62 -0.51 -2.27 16 21 C -0.08 -1.57 9.35 -39.58 -0.37 -1.94 16 22 C -0.13 -2.13 10.05 -39.58 -0.40 -2.53 16 23 C -0.13 -1.88 10.05 -39.58 -0.40 -2.27 16 24 C -0.13 -1.88 10.05 -39.58 -0.40 -2.28 16 25 C -0.12 -1.88 9.07 -39.59 -0.36 -2.24 16 26 H 0.26 7.58 8.31 -40.82 -0.34 7.25 16 27 H 0.13 1.68 4.49 -52.49 -0.24 1.45 16 28 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 29 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 30 H 0.13 1.09 8.06 -52.48 -0.42 0.67 16 31 H 0.13 1.93 7.66 -52.48 -0.40 1.53 16 32 H 0.13 3.05 7.78 -52.49 -0.41 2.64 16 33 H 0.12 1.72 8.06 -52.49 -0.42 1.29 16 34 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 35 H 0.12 1.32 8.06 -52.49 -0.42 0.89 16 36 H 0.12 1.58 6.33 -52.48 -0.33 1.25 16 LS Contribution 318.17 15.07 4.79 4.79 Total: -1.00 -35.11 318.17 -8.79 -43.90 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -3.78 Total: 3.22 kcal Atomic # 6 Polarization: -18.94 SS G_CDS: -5.02 Total: -23.96 kcal Atomic # 7 Polarization: -27.71 SS G_CDS: 0.76 Total: -26.95 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: -0.52 Total: -18.02 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -35.11 -8.79 -43.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224378516.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.480 kcal (2) G-P(sol) polarization free energy of solvation -35.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds