Wall clock time and date at job start Tue Mar 31 2020 05:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34777 * 116.99795 * 2 1 4 4 O 1.21500 * 120.00367 * 359.97438 * 3 2 1 5 5 C 1.47402 * 119.99882 * 180.02562 * 3 2 1 6 6 C 1.36732 * 126.89015 * 179.97438 * 5 3 2 7 7 C 1.41844 * 103.81036 * 179.97438 * 6 5 3 8 8 O 1.35730 * 126.78823 * 179.97438 * 7 6 5 9 9 C 1.42897 * 117.00415 * 180.02562 * 8 7 6 10 10 H 1.08996 * 110.64004 * 328.31730 * 9 8 7 11 11 C 1.55154 * 110.87158 * 205.06565 * 9 8 7 12 12 C 1.55137 * 101.48430 * 205.89748 * 11 9 8 13 13 N 1.47425 * 104.72129 * 37.29764 * 12 11 9 14 14 C 1.36932 * 125.64896 * 155.81436 * 13 12 11 15 15 H 1.08000 * 120.00043 * 194.56595 * 14 13 12 16 16 C 1.38813 * 119.99842 * 14.56765 * 14 13 12 17 17 N 1.31623 * 119.99583 * 203.65448 * 16 14 13 18 18 Si 1.86797 * 120.00020 * 23.65850 * 16 14 13 19 19 H 1.48500 * 109.46947 * 269.99730 * 18 16 14 20 20 H 1.48498 * 109.47345 * 29.99593 * 18 16 14 21 21 H 1.48501 * 109.47178 * 149.99907 * 18 16 14 22 22 C 1.47026 * 108.70205 * 335.55060 * 13 12 11 23 23 N 1.30544 * 106.43033 * 0.23101 * 7 6 5 24 24 O 1.20866 * 111.90598 * 359.59015 * 23 7 6 25 25 H 1.08997 * 109.47085 * 60.00101 * 1 2 3 26 26 H 1.09002 * 109.47149 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47056 * 299.99853 * 1 2 3 28 28 H 1.08004 * 128.09331 * 359.96331 * 6 5 3 29 29 H 1.08994 * 111.00768 * 324.13561 * 11 9 8 30 30 H 1.08995 * 111.00155 * 87.95667 * 11 9 8 31 31 H 1.08999 * 110.49481 * 278.45643 * 12 11 9 32 32 H 1.08997 * 110.34065 * 156.05714 * 12 11 9 33 33 H 0.96991 * 120.00329 * 354.68992 * 17 16 14 34 34 H 1.09007 * 109.88116 * 120.70754 * 22 13 12 35 35 H 1.08996 * 109.87985 * 241.71245 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2009 0.0000 4 8 1.4021 2.2199 -0.0005 5 6 3.5358 1.2781 -0.0006 6 6 4.2982 2.4131 -0.0011 7 6 5.6305 1.9261 -0.0009 8 8 6.7671 2.6680 -0.0018 9 6 8.0063 1.9565 -0.0019 10 1 7.9075 1.0127 0.5344 11 6 9.1398 2.8204 0.6114 12 6 10.3937 2.2169 -0.0744 13 7 9.9557 1.9034 -1.4468 14 6 10.7724 1.7986 -2.5408 15 1 10.3477 1.7995 -3.5338 16 6 12.1462 1.6912 -2.3736 17 7 12.9575 2.0502 -3.3459 18 14 12.8435 1.0370 -0.7688 19 1 13.0675 2.1656 0.1700 20 1 11.8842 0.0760 -0.1676 21 1 14.1329 0.3496 -1.0331 22 6 8.4974 1.7156 -1.4449 23 7 5.5474 0.6233 -0.0053 24 8 4.3996 0.2447 -0.0001 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 3.9642 3.4402 -0.0018 29 1 9.0152 3.8712 0.3500 30 1 9.1875 2.6918 1.6927 31 1 10.7100 1.3092 0.4395 32 1 11.2037 2.9459 -0.0920 33 1 12.5962 2.3167 -4.2056 34 1 8.0305 2.4328 -2.1200 35 1 8.2541 0.7001 -1.7572 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226150356.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:28 Heat of formation + Delta-G solvation = -12.586361 kcal Electronic energy + Delta-G solvation = -21608.390216 eV Core-core repulsion = 17998.511031 eV Total energy + Delta-G solvation = -3609.879184 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.109 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -45.24249 -40.78915 -39.42686 -37.10657 -36.85157 -33.52485 -32.52448 -32.15832 -29.67214 -28.45974 -28.15981 -24.91186 -24.12819 -23.51684 -21.90205 -20.99294 -20.10688 -19.41333 -18.18908 -17.61637 -17.55713 -17.06219 -16.72436 -16.30382 -15.53014 -15.14068 -14.37864 -14.27337 -13.95990 -13.79412 -13.63069 -13.49754 -13.24860 -12.70625 -12.55471 -11.84181 -11.81554 -11.42149 -11.34562 -11.28617 -11.13770 -10.93139 -10.71802 -10.25192 -10.10325 -9.64493 -9.33213 -9.27066 -8.56735 -7.15889 -6.36495 -3.28095 0.22897 1.74749 1.86812 2.24857 2.46722 2.99696 3.37086 3.48882 3.63452 3.86158 4.41039 4.48180 4.54729 4.63954 4.73519 4.73752 4.85196 4.91001 5.07977 5.16507 5.27024 5.29611 5.44587 5.64947 5.72784 5.87200 6.06359 6.29465 6.40527 6.45038 6.62324 6.99764 7.09502 7.63603 7.85209 8.28963 8.98039 9.50892 10.17485 11.10971 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.043768 B = 0.003213 C = 0.003179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.588805 B = 8711.347874 C = 8805.936897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.342 6.342 3 C 0.562 3.438 4 O -0.477 6.477 5 C -0.060 4.060 6 C -0.135 4.135 7 C 0.214 3.786 8 O -0.268 6.268 9 C 0.071 3.929 10 H 0.089 0.911 11 C -0.122 4.122 12 C 0.106 3.894 13 N -0.604 5.604 14 C -0.329 4.329 15 H 0.076 0.924 16 C -0.018 4.018 17 N -0.919 5.919 18 Si 1.064 2.936 19 H -0.292 1.292 20 H -0.286 1.286 21 H -0.297 1.297 22 C 0.119 3.881 23 N -0.375 5.375 24 O 0.138 5.862 25 H 0.069 0.931 26 H 0.109 0.891 27 H 0.068 0.932 28 H 0.194 0.806 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.037 0.963 32 H 0.070 0.930 33 H 0.263 0.737 34 H 0.039 0.961 35 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.371 -2.259 10.366 25.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.257 6.257 3 C 0.404 3.596 4 O -0.363 6.363 5 C -0.125 4.125 6 C -0.157 4.157 7 C 0.017 3.983 8 O -0.173 6.173 9 C 0.015 3.985 10 H 0.107 0.893 11 C -0.160 4.160 12 C -0.019 4.019 13 N -0.332 5.332 14 C -0.456 4.456 15 H 0.093 0.907 16 C -0.219 4.219 17 N -0.559 5.559 18 Si 0.896 3.104 19 H -0.219 1.219 20 H -0.213 1.213 21 H -0.224 1.224 22 C -0.007 4.007 23 N -0.096 5.096 24 O 0.068 5.932 25 H 0.087 0.913 26 H 0.127 0.873 27 H 0.087 0.913 28 H 0.211 0.789 29 H 0.103 0.897 30 H 0.095 0.905 31 H 0.054 0.946 32 H 0.088 0.912 33 H 0.074 0.926 34 H 0.057 0.943 35 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -21.166 -2.897 11.061 24.057 hybrid contribution -1.918 0.840 -0.916 2.286 sum -23.085 -2.057 10.145 25.299 Atomic orbital electron populations 1.23444 0.74651 1.04541 1.03094 1.86642 1.24425 1.31052 1.83595 1.19009 0.84823 0.82419 0.73378 1.90953 1.64214 1.35974 1.45171 1.22460 0.90489 0.88169 1.11368 1.22192 0.88323 1.00934 1.04278 1.21864 0.89357 0.87195 0.99869 1.86300 1.11227 1.31663 1.88112 1.23778 0.79688 0.95818 0.99239 0.89314 1.22954 0.93294 1.00387 0.99394 1.22127 0.95416 0.98040 0.86332 1.44687 1.01214 1.82652 1.04686 1.20050 0.89374 1.50926 0.85247 0.90653 1.25944 0.91727 0.98664 1.05586 1.70903 1.36470 1.43587 1.04959 0.83846 0.75029 0.76834 0.74700 1.21928 1.21301 1.22420 1.21705 0.87288 0.99022 0.92679 1.74122 0.98576 1.13414 1.23454 1.85093 1.09413 1.31115 1.67618 0.91255 0.87291 0.91298 0.78900 0.89654 0.90454 0.94566 0.91202 0.92614 0.94280 0.94629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.18 10.57 101.05 1.07 1.25 16 2 O -0.34 -2.98 10.58 -41.46 -0.44 -3.42 16 3 C 0.56 5.75 7.96 34.46 0.27 6.02 16 4 O -0.48 -5.53 16.70 -19.26 -0.32 -5.85 16 5 C -0.06 -0.68 7.36 -36.40 -0.27 -0.95 16 6 C -0.14 -1.56 10.97 -38.75 -0.43 -1.99 16 7 C 0.21 3.11 7.98 -16.72 -0.13 2.98 16 8 O -0.27 -4.34 9.94 -18.90 -0.19 -4.53 16 9 C 0.07 1.25 3.28 -24.90 -0.08 1.17 16 10 H 0.09 1.52 7.46 -51.93 -0.39 1.13 16 11 C -0.12 -2.08 6.83 -24.46 -0.17 -2.25 16 12 C 0.11 2.28 4.71 -2.41 -0.01 2.27 16 13 N -0.60 -15.16 3.25 -169.93 -0.55 -15.71 16 14 C -0.33 -9.56 10.44 -15.06 -0.16 -9.72 16 15 H 0.08 2.32 8.06 -52.49 -0.42 1.90 16 16 C -0.02 -0.54 5.43 -17.43 -0.09 -0.64 16 17 N -0.92 -28.82 13.70 55.49 0.76 -28.06 16 18 Si 1.06 26.46 24.69 -169.99 -4.20 22.26 16 19 H -0.29 -6.75 6.66 56.52 0.38 -6.38 16 20 H -0.29 -6.75 6.22 56.52 0.35 -6.40 16 21 H -0.30 -7.46 7.11 56.52 0.40 -7.05 16 22 C 0.12 2.56 7.01 -3.06 -0.02 2.54 16 23 N -0.37 -5.61 11.11 30.47 0.34 -5.27 16 24 O 0.14 1.78 11.22 15.43 0.17 1.95 16 25 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 26 H 0.11 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.19 1.76 8.06 -52.48 -0.42 1.34 16 29 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 30 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 31 H 0.04 0.78 5.50 -51.93 -0.29 0.50 16 32 H 0.07 1.57 6.38 -51.93 -0.33 1.24 16 33 H 0.26 8.19 8.73 -40.82 -0.36 7.83 16 34 H 0.04 0.86 8.06 -51.93 -0.42 0.44 16 35 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 304.81 15.07 4.59 4.59 Total: -1.00 -33.26 304.81 -3.88 -37.14 By element: Atomic # 1 Polarization: 0.23 SS G_CDS: -4.03 Total: -3.80 kcal Atomic # 6 Polarization: 0.71 SS G_CDS: -0.02 Total: 0.69 kcal Atomic # 7 Polarization: -49.59 SS G_CDS: 0.55 Total: -49.04 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: -0.78 Total: -11.84 kcal Atomic # 14 Polarization: 26.46 SS G_CDS: -4.20 Total: 22.26 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -33.26 -3.88 -37.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226150356.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.558 kcal (2) G-P(sol) polarization free energy of solvation -33.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds