Wall clock time and date at job start Tue Mar 31 2020 05:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45202 * 109.47136 * 2 1 4 4 C 1.34230 * 117.00081 * 179.97438 * 3 2 1 5 5 O 1.20823 * 119.99840 * 359.97438 * 4 3 2 6 6 C 1.50697 * 119.99844 * 180.02562 * 4 3 2 7 7 C 1.52997 * 109.46852 * 180.02562 * 6 4 3 8 8 H 1.09001 * 109.47375 * 54.99699 * 7 6 4 9 9 C 1.50706 * 109.47430 * 174.99841 * 7 6 4 10 10 H 1.07999 * 120.00193 * 240.00552 * 9 7 6 11 11 C 1.37879 * 119.99398 * 59.99633 * 9 7 6 12 12 N 1.31514 * 119.99350 * 180.02562 * 11 9 7 13 13 Si 1.86798 * 120.00608 * 0.02562 * 11 9 7 14 14 H 1.48493 * 109.47326 * 270.00340 * 13 11 9 15 15 H 1.48506 * 109.46545 * 30.00090 * 13 11 9 16 16 H 1.48498 * 109.47210 * 149.99801 * 13 11 9 17 17 O 1.42903 * 109.47584 * 294.99798 * 7 6 4 18 18 C 1.35770 * 117.00265 * 149.99930 * 17 7 6 19 19 C 1.39356 * 120.07399 * 179.72925 * 18 17 7 20 20 C 1.38477 * 117.96557 * 179.78952 * 19 18 17 21 21 C 1.39353 * 117.95861 * 0.47252 * 20 19 18 22 22 O 1.35777 * 120.07695 * 179.73639 * 21 20 19 23 23 N 1.32178 * 119.84995 * 359.75815 * 21 20 19 24 24 N 1.28340 * 122.18736 * 359.97438 * 23 21 20 25 25 H 1.09001 * 109.47050 * 300.00066 * 1 2 3 26 26 H 1.08997 * 109.47071 * 60.00270 * 1 2 3 27 27 H 1.09003 * 109.46763 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47050 * 239.99934 * 2 1 3 29 29 H 1.08997 * 109.47131 * 120.00515 * 2 1 3 30 30 H 1.09002 * 109.47489 * 59.99869 * 6 4 3 31 31 H 1.08998 * 109.46839 * 299.99682 * 6 4 3 32 32 H 0.97005 * 119.99661 * 179.97438 * 12 11 9 33 33 H 1.08000 * 121.02030 * 0.02562 * 19 18 17 34 34 H 1.07997 * 121.02382 * 180.23163 * 20 19 18 35 35 H 0.96705 * 113.99876 * 270.02726 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3448 1.5449 0.0005 5 8 4.0808 0.5867 0.0015 6 6 3.9207 2.9374 0.0012 7 6 5.4486 2.8574 0.0010 8 1 5.7806 2.2500 -0.8410 9 6 6.0244 4.2446 -0.1222 10 1 6.6591 4.4934 -0.9599 11 6 5.7407 5.1962 0.8344 12 7 6.2428 6.4069 0.7266 13 14 4.6433 4.7658 2.2835 14 1 3.2286 5.0525 1.9354 15 1 4.7914 3.3236 2.6052 16 1 5.0378 5.5788 3.4618 17 8 5.8946 2.2633 1.2218 18 6 7.0524 1.5556 1.1760 19 6 7.5493 0.9539 2.3306 20 6 8.7311 0.2389 2.2332 21 6 9.3549 0.1741 0.9887 22 8 10.5184 -0.5109 0.8455 23 7 8.8115 0.7814 -0.0519 24 7 7.7134 1.4398 0.0373 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 3.5844 3.4694 0.8912 31 1 3.5851 3.4698 -0.8888 32 1 6.0429 7.0765 1.3994 33 1 7.0266 1.0394 3.2718 34 1 9.1585 -0.2503 3.0960 35 1 11.3104 0.0236 0.9944 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227095770.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:00 Heat of formation + Delta-G solvation = -92.526490 kcal Electronic energy + Delta-G solvation = -22450.111121 eV Core-core repulsion = 18836.765473 eV Total energy + Delta-G solvation = -3613.345648 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.109 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.71501 -40.10017 -38.18357 -36.85831 -36.13517 -33.47145 -32.56957 -31.87942 -31.12030 -29.64652 -26.55639 -24.41932 -23.50284 -23.19521 -21.75045 -20.40396 -18.74859 -18.49943 -17.46946 -17.23394 -16.39647 -16.05682 -15.99917 -15.75183 -14.86514 -14.42738 -14.11753 -13.92979 -13.57143 -13.40820 -13.06657 -12.92730 -12.76338 -12.40748 -12.18536 -11.83492 -11.71401 -11.52268 -11.15188 -11.08155 -10.71824 -10.46339 -10.37107 -10.10640 -9.90722 -9.57512 -9.35997 -8.87625 -8.73939 -8.09400 -6.36715 -4.47404 1.17024 1.46425 2.63770 2.97620 3.09498 3.18972 3.33406 3.68123 3.89770 4.11446 4.20731 4.73375 4.92437 4.95031 4.98970 5.03810 5.11776 5.19705 5.27738 5.38353 5.66728 5.72907 5.76753 5.83661 5.87095 5.92982 6.13160 6.27392 6.57240 6.68262 6.79354 7.25277 7.56753 7.94478 8.15997 8.27047 8.73552 9.23583 9.25596 10.73603 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.012588 B = 0.007197 C = 0.005129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2223.753173 B = 3889.627563 C = 5458.272176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.059 3.941 3 O -0.365 6.365 4 C 0.457 3.543 5 O -0.504 6.504 6 C -0.112 4.112 7 C 0.185 3.815 8 H 0.078 0.922 9 C -0.535 4.535 10 H 0.090 0.910 11 C 0.087 3.913 12 N -0.873 5.873 13 Si 0.860 3.140 14 H -0.274 1.274 15 H -0.228 1.228 16 H -0.289 1.289 17 O -0.294 6.294 18 C 0.299 3.701 19 C -0.138 4.138 20 C -0.107 4.107 21 C 0.188 3.812 22 O -0.478 6.478 23 N -0.219 5.219 24 N -0.261 5.261 25 H 0.065 0.935 26 H 0.066 0.934 27 H 0.075 0.925 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.095 0.905 31 H 0.127 0.873 32 H 0.270 0.730 33 H 0.150 0.850 34 H 0.150 0.850 35 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.222 -10.581 4.067 12.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.015 4.015 3 O -0.283 6.283 4 C 0.301 3.699 5 O -0.390 6.390 6 C -0.149 4.149 7 C 0.131 3.869 8 H 0.096 0.904 9 C -0.572 4.572 10 H 0.108 0.892 11 C -0.119 4.119 12 N -0.508 5.508 13 Si 0.688 3.312 14 H -0.201 1.201 15 H -0.153 1.153 16 H -0.216 1.216 17 O -0.198 6.198 18 C 0.114 3.886 19 C -0.169 4.169 20 C -0.136 4.136 21 C 0.000 4.000 22 O -0.282 6.282 23 N -0.072 5.072 24 N -0.122 5.122 25 H 0.084 0.916 26 H 0.085 0.915 27 H 0.094 0.906 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.113 0.887 31 H 0.145 0.855 32 H 0.080 0.920 33 H 0.168 0.832 34 H 0.168 0.832 35 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -4.493 -10.775 2.671 11.975 hybrid contribution -0.234 -0.074 2.377 2.390 sum -4.726 -10.848 5.048 12.865 Atomic orbital electron populations 1.21791 0.93007 1.02565 1.03445 1.22933 0.95068 0.81199 1.02329 1.86560 1.25556 1.31598 1.84545 1.24448 0.79907 0.93709 0.71872 1.90633 1.60214 1.43200 1.44995 1.22276 0.97101 0.89443 1.06077 1.20353 0.87494 0.95113 0.83894 0.90376 1.21215 1.32475 0.91765 1.11716 0.89196 1.25111 0.94869 0.94517 0.97444 1.69904 1.42485 1.03354 1.35051 0.87350 0.80310 0.80937 0.82604 1.20121 1.15254 1.21593 1.86681 1.32436 1.60867 1.39797 1.21501 0.88580 0.87698 0.90808 1.21566 0.96849 0.99096 0.99349 1.22224 0.95468 0.97735 0.98218 1.20601 0.91359 0.97485 0.90546 1.84824 1.13484 1.36640 1.93230 1.72629 1.04525 1.02794 1.27256 1.73147 1.02499 1.14221 1.22330 0.91599 0.91511 0.90600 0.91466 0.91612 0.88716 0.85545 0.92039 0.83212 0.83214 0.75070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 10.29 37.16 0.38 -1.08 16 2 C 0.06 0.78 6.19 37.16 0.23 1.01 16 3 O -0.36 -6.14 10.22 -39.26 -0.40 -6.54 16 4 C 0.46 8.92 7.84 36.00 0.28 9.20 16 5 O -0.50 -10.89 15.17 -24.06 -0.36 -11.26 16 6 C -0.11 -2.29 4.97 -27.89 -0.14 -2.43 16 7 C 0.19 4.37 1.57 -27.88 -0.04 4.32 16 8 H 0.08 1.90 6.82 -51.93 -0.35 1.55 16 9 C -0.54 -14.34 9.51 -34.44 -0.33 -14.67 16 10 H 0.09 2.66 8.06 -52.49 -0.42 2.23 16 11 C 0.09 2.36 5.45 -17.82 -0.10 2.26 16 12 N -0.87 -25.08 13.96 55.43 0.77 -24.30 16 13 Si 0.86 19.90 23.86 -169.99 -4.06 15.84 16 14 H -0.27 -6.03 6.91 56.52 0.39 -5.64 16 15 H -0.23 -5.12 5.30 56.52 0.30 -4.82 16 16 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 17 O -0.29 -6.86 5.85 -33.49 -0.20 -7.06 16 18 C 0.30 6.57 7.53 -16.99 -0.13 6.45 16 19 C -0.14 -2.42 10.15 -39.08 -0.40 -2.82 16 20 C -0.11 -1.61 10.15 -39.08 -0.40 -2.01 16 21 C 0.19 3.22 7.85 -16.99 -0.13 3.09 16 22 O -0.48 -6.62 13.58 -19.04 -0.26 -6.88 16 23 N -0.22 -4.59 11.51 30.51 0.35 -4.24 16 24 N -0.26 -6.01 9.82 30.51 0.30 -5.71 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.87 8.13 -51.93 -0.42 0.45 16 29 H 0.07 0.87 8.13 -51.93 -0.42 0.45 16 30 H 0.10 1.98 3.42 -51.93 -0.18 1.80 16 31 H 0.13 2.32 8.14 -51.93 -0.42 1.90 16 32 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 33 H 0.15 2.21 8.06 -52.49 -0.42 1.79 16 34 H 0.15 1.61 8.06 -52.49 -0.42 1.18 16 35 H 0.39 3.36 9.06 45.56 0.41 3.78 16 LS Contribution 305.40 15.07 4.60 4.60 Total: -1.00 -33.28 305.40 -3.19 -36.46 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -3.17 Total: 5.75 kcal Atomic # 6 Polarization: 4.10 SS G_CDS: -0.77 Total: 3.33 kcal Atomic # 7 Polarization: -35.68 SS G_CDS: 1.42 Total: -34.26 kcal Atomic # 8 Polarization: -30.51 SS G_CDS: -1.22 Total: -31.73 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -4.06 Total: 15.84 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -33.28 -3.19 -36.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227095770.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.063 kcal (2) G-P(sol) polarization free energy of solvation -33.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds