Wall clock time and date at job start Tue Mar 31 2020 05:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45202 * 109.47136 * 2 1 4 4 C 1.34230 * 117.00081 * 179.97438 * 3 2 1 5 5 O 1.20823 * 119.99840 * 359.97438 * 4 3 2 6 6 C 1.50697 * 119.99844 * 180.02562 * 4 3 2 7 7 C 1.52997 * 109.46852 * 180.02562 * 6 4 3 8 8 H 1.09001 * 109.47375 * 54.99699 * 7 6 4 9 9 C 1.50706 * 109.47430 * 174.99841 * 7 6 4 10 10 H 1.07999 * 120.00193 * 240.00552 * 9 7 6 11 11 C 1.37879 * 119.99398 * 59.99633 * 9 7 6 12 12 N 1.31514 * 119.99350 * 180.02562 * 11 9 7 13 13 Si 1.86798 * 120.00608 * 0.02562 * 11 9 7 14 14 H 1.48493 * 109.47326 * 270.00340 * 13 11 9 15 15 H 1.48506 * 109.46545 * 30.00090 * 13 11 9 16 16 H 1.48498 * 109.47210 * 149.99801 * 13 11 9 17 17 O 1.42903 * 109.47584 * 294.99798 * 7 6 4 18 18 C 1.35770 * 117.00265 * 149.99930 * 17 7 6 19 19 C 1.39356 * 120.07399 * 179.72925 * 18 17 7 20 20 C 1.38477 * 117.96557 * 179.78952 * 19 18 17 21 21 C 1.39353 * 117.95861 * 0.47252 * 20 19 18 22 22 O 1.35777 * 120.07695 * 179.73639 * 21 20 19 23 23 N 1.32178 * 119.84995 * 359.75815 * 21 20 19 24 24 N 1.28340 * 122.18736 * 359.97438 * 23 21 20 25 25 H 1.09001 * 109.47050 * 300.00066 * 1 2 3 26 26 H 1.08997 * 109.47071 * 60.00270 * 1 2 3 27 27 H 1.09003 * 109.46763 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47050 * 239.99934 * 2 1 3 29 29 H 1.08997 * 109.47131 * 120.00515 * 2 1 3 30 30 H 1.09002 * 109.47489 * 59.99869 * 6 4 3 31 31 H 1.08998 * 109.46839 * 299.99682 * 6 4 3 32 32 H 0.97005 * 119.99661 * 179.97438 * 12 11 9 33 33 H 1.08000 * 121.02030 * 0.02562 * 19 18 17 34 34 H 1.07997 * 121.02382 * 180.23163 * 20 19 18 35 35 H 0.96705 * 113.99876 * 270.02726 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3448 1.5449 0.0005 5 8 4.0808 0.5867 0.0015 6 6 3.9207 2.9374 0.0012 7 6 5.4486 2.8574 0.0010 8 1 5.7806 2.2500 -0.8410 9 6 6.0244 4.2446 -0.1222 10 1 6.6591 4.4934 -0.9599 11 6 5.7407 5.1962 0.8344 12 7 6.2428 6.4069 0.7266 13 14 4.6433 4.7658 2.2835 14 1 3.2286 5.0525 1.9354 15 1 4.7914 3.3236 2.6052 16 1 5.0378 5.5788 3.4618 17 8 5.8946 2.2633 1.2218 18 6 7.0524 1.5556 1.1760 19 6 7.5493 0.9539 2.3306 20 6 8.7311 0.2389 2.2332 21 6 9.3549 0.1741 0.9887 22 8 10.5184 -0.5109 0.8455 23 7 8.8115 0.7814 -0.0519 24 7 7.7134 1.4398 0.0373 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 3.5844 3.4694 0.8912 31 1 3.5851 3.4698 -0.8888 32 1 6.0429 7.0765 1.3994 33 1 7.0266 1.0394 3.2718 34 1 9.1585 -0.2503 3.0960 35 1 11.3104 0.0236 0.9944 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227095770.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:00 Heat of formation + Delta-G solvation = -121.514779 kcal Electronic energy + Delta-G solvation = -22451.368148 eV Core-core repulsion = 18836.765473 eV Total energy + Delta-G solvation = -3614.602675 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.109 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.19632 -41.56745 -39.72749 -38.18133 -37.57543 -35.31767 -34.06924 -33.32446 -32.42639 -31.15526 -28.37473 -25.94594 -24.93029 -24.41625 -23.30086 -21.93149 -20.27093 -19.94601 -19.02316 -18.67733 -17.92548 -17.71278 -17.54259 -17.09758 -16.50841 -15.94004 -15.55264 -15.29633 -15.05822 -14.87795 -14.67461 -14.34251 -14.05295 -13.69984 -13.58378 -13.13740 -12.92295 -12.90515 -12.71225 -12.50650 -12.45603 -12.27285 -11.78430 -11.54522 -11.39252 -11.22433 -11.10592 -10.87408 -10.23885 -9.72315 -8.43993 -6.61034 -0.18317 0.05838 1.10592 1.27329 1.33457 1.53903 1.64494 2.15798 2.28942 2.46403 2.69752 2.97135 3.29918 3.69660 3.75784 3.91511 3.98765 4.07101 4.08590 4.16559 4.21850 4.33165 4.49775 4.69343 4.79114 4.86847 4.91838 4.95929 5.11772 5.18274 5.26560 5.41795 6.02614 6.35585 6.53875 6.60468 6.70967 7.15657 7.76975 8.70633 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.012588 B = 0.007197 C = 0.005129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2223.753173 B = 3889.627563 C = 5458.272176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.048 3.952 3 O -0.362 6.362 4 C 0.467 3.533 5 O -0.528 6.528 6 C -0.112 4.112 7 C 0.199 3.801 8 H 0.058 0.942 9 C -0.543 4.543 10 H 0.040 0.960 11 C 0.042 3.958 12 N -0.922 5.922 13 Si 0.919 3.081 14 H -0.250 1.250 15 H -0.216 1.216 16 H -0.291 1.291 17 O -0.303 6.303 18 C 0.262 3.738 19 C -0.136 4.136 20 C -0.084 4.084 21 C 0.204 3.796 22 O -0.476 6.476 23 N -0.265 5.265 24 N -0.305 5.305 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.103 0.897 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.098 0.902 31 H 0.142 0.858 32 H 0.273 0.727 33 H 0.182 0.818 34 H 0.206 0.794 35 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.300 -12.801 6.575 15.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.025 4.025 3 O -0.279 6.279 4 C 0.312 3.688 5 O -0.418 6.418 6 C -0.149 4.149 7 C 0.144 3.856 8 H 0.076 0.924 9 C -0.580 4.580 10 H 0.058 0.942 11 C -0.161 4.161 12 N -0.559 5.559 13 Si 0.743 3.257 14 H -0.176 1.176 15 H -0.139 1.139 16 H -0.218 1.218 17 O -0.207 6.207 18 C 0.076 3.924 19 C -0.166 4.166 20 C -0.112 4.112 21 C 0.014 3.986 22 O -0.283 6.283 23 N -0.117 5.117 24 N -0.164 5.164 25 H 0.088 0.912 26 H 0.089 0.911 27 H 0.122 0.878 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.116 0.884 31 H 0.160 0.840 32 H 0.082 0.918 33 H 0.199 0.801 34 H 0.223 0.777 35 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges -5.556 -13.004 5.146 15.049 hybrid contribution 0.317 0.435 1.544 1.635 sum -5.239 -12.570 6.690 15.172 Atomic orbital electron populations 1.21826 0.89874 1.04510 1.03825 1.23349 0.97458 0.79237 1.02452 1.86532 1.23553 1.33972 1.83830 1.23980 0.80769 0.92684 0.71407 1.90628 1.61069 1.43762 1.46296 1.22089 0.95001 0.90777 1.06991 1.19942 0.89216 0.92553 0.83861 0.92424 1.21187 1.32181 0.94094 1.10515 0.94193 1.25870 0.96146 0.93939 1.00101 1.70034 1.44641 1.04705 1.36561 0.86399 0.79436 0.81203 0.78618 1.17561 1.13918 1.21782 1.86568 1.33564 1.61931 1.38671 1.21962 0.88656 0.89337 0.92453 1.21981 0.97480 0.98173 0.98925 1.22727 0.93741 0.95855 0.98887 1.20899 0.91919 0.95230 0.90564 1.84778 1.13573 1.36704 1.93272 1.72479 1.04779 1.04854 1.29604 1.72996 1.03711 1.15848 1.23861 0.91214 0.91128 0.87836 0.91450 0.91534 0.88416 0.84020 0.91751 0.80100 0.77660 0.71960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 10.29 71.98 0.74 -1.59 16 2 C 0.05 1.19 6.19 71.98 0.45 1.63 16 3 O -0.36 -11.53 10.22 -51.41 -0.53 -12.06 16 4 C 0.47 17.88 7.84 71.24 0.56 18.44 16 5 O -0.53 -22.78 15.17 27.05 0.41 -22.37 16 6 C -0.11 -4.55 4.97 29.85 0.15 -4.40 16 7 C 0.20 9.67 1.57 29.85 0.05 9.72 16 8 H 0.06 2.98 6.82 -2.39 -0.02 2.97 16 9 C -0.54 -30.65 9.51 25.60 0.24 -30.41 16 10 H 0.04 2.57 8.06 -2.91 -0.02 2.54 16 11 C 0.04 2.31 5.45 84.66 0.46 2.77 16 12 N -0.92 -54.98 13.96 21.45 0.30 -54.68 16 13 Si 0.92 40.83 23.86 68.60 1.64 42.46 16 14 H -0.25 -10.10 6.91 99.48 0.69 -9.41 16 15 H -0.22 -9.10 5.30 99.48 0.53 -8.57 16 16 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 17 O -0.30 -14.16 5.85 -77.13 -0.45 -14.61 16 18 C 0.26 11.54 7.53 84.91 0.64 12.18 16 19 C -0.14 -4.42 10.15 22.60 0.23 -4.19 16 20 C -0.08 -2.18 10.15 22.60 0.23 -1.95 16 21 C 0.20 6.54 7.85 84.91 0.67 7.21 16 22 O -0.48 -11.68 13.58 -91.05 -1.24 -12.92 16 23 N -0.27 -11.26 11.51 -170.24 -1.96 -13.22 16 24 N -0.31 -14.55 9.82 -170.25 -1.67 -16.22 16 25 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.07 1.65 8.13 -2.39 -0.02 1.63 16 29 H 0.07 1.63 8.13 -2.39 -0.02 1.61 16 30 H 0.10 3.93 3.42 -2.39 -0.01 3.92 16 31 H 0.14 5.21 8.14 -2.39 -0.02 5.19 16 32 H 0.27 15.10 8.31 -92.70 -0.77 14.32 16 33 H 0.18 4.62 8.06 -2.91 -0.02 4.60 16 34 H 0.21 3.05 8.06 -2.91 -0.02 3.03 16 35 H 0.42 5.74 9.06 -74.05 -0.67 5.07 16 Total: -1.00 -77.39 305.40 1.18 -76.21 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: 0.27 Total: 18.00 kcal Atomic # 6 Polarization: 4.99 SS G_CDS: 4.41 Total: 9.40 kcal Atomic # 7 Polarization: -80.78 SS G_CDS: -3.33 Total: -84.11 kcal Atomic # 8 Polarization: -60.16 SS G_CDS: -1.80 Total: -61.96 kcal Atomic # 14 Polarization: 40.83 SS G_CDS: 1.64 Total: 42.46 kcal Total: -77.39 1.18 -76.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227095770.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.309 kcal (2) G-P(sol) polarization free energy of solvation -77.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds