Wall clock time and date at job start Tue Mar 31 2020 05:26:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38869 * 119.24627 * 2 1 4 4 C 1.36884 * 119.80177 * 179.69615 * 3 2 1 5 5 C 1.41121 * 118.39321 * 0.56474 * 4 3 2 6 6 C 1.40877 * 120.71999 * 179.70259 * 5 4 3 7 7 H 1.08004 * 120.00526 * 150.60565 * 6 5 4 8 8 C 1.40065 * 120.00092 * 330.60973 * 6 5 4 9 9 N 1.30776 * 120.00121 * 163.06045 * 8 6 5 10 10 Si 1.86805 * 119.99787 * 343.06525 * 8 6 5 11 11 H 1.48501 * 109.46995 * 90.35456 * 10 8 6 12 12 H 1.48492 * 109.47145 * 210.35879 * 10 8 6 13 13 H 1.48504 * 109.46731 * 330.35669 * 10 8 6 14 14 C 1.41884 * 118.56524 * 359.72600 * 5 4 3 15 15 C 1.47778 * 119.99618 * 180.02562 * 14 5 4 16 16 C 1.39871 * 120.04593 * 316.22460 * 15 14 5 17 17 C 1.37873 * 120.19664 * 179.69750 * 16 15 14 18 18 C 1.38470 * 120.28422 * 0.60160 * 17 16 15 19 19 F 1.35098 * 119.95780 * 179.69914 * 18 17 16 20 20 C 1.40030 * 120.08912 * 359.67777 * 18 17 16 21 21 C 1.43197 * 120.10267 * 180.02562 * 20 18 17 22 22 N 7.35464 * 105.96130 * 160.87107 * 2 1 3 23 23 C 1.39364 * 119.80093 * 0.02562 * 20 18 17 24 24 N 1.31740 * 119.24196 * 180.27214 * 2 1 3 25 25 H 1.08998 * 109.46822 * 269.73101 * 1 2 3 26 26 H 1.09001 * 109.47220 * 149.72776 * 1 2 3 27 27 H 1.08999 * 109.46926 * 29.72623 * 1 2 3 28 28 H 1.07999 * 120.09709 * 0.02562 * 3 2 1 29 29 H 1.07997 * 120.80521 * 180.29158 * 4 3 2 30 30 H 0.97001 * 119.99782 * 179.97438 * 9 8 6 31 31 H 1.08003 * 119.90269 * 359.97438 * 16 15 14 32 32 H 1.08001 * 119.85810 * 180.27925 * 17 16 15 33 33 H 1.08005 * 120.13981 * 179.97438 * 23 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1855 1.2117 0.0000 4 6 3.5543 1.2250 0.0063 5 6 4.2374 -0.0099 0.0004 6 6 5.6455 -0.0534 0.0002 7 1 6.1602 -0.8867 0.4553 8 6 6.3781 0.9842 -0.5902 9 7 7.6484 1.1271 -0.3140 10 14 5.5406 2.1639 -1.7719 11 1 4.9990 3.3212 -1.0151 12 1 6.5264 2.6447 -2.7730 13 1 4.4307 1.4636 -2.4668 14 6 3.4754 -1.2067 -0.0058 15 6 4.1582 -2.5173 -0.0114 16 6 5.2577 -2.7305 -0.8493 17 6 5.9009 -3.9500 -0.8526 18 6 5.4561 -4.9762 -0.0362 19 9 6.0876 -6.1705 -0.0492 20 6 4.3529 -4.7777 0.8031 21 6 3.8931 -5.8386 1.6478 22 7 3.5295 -6.6807 2.3172 23 6 3.7038 -3.5446 0.8138 24 7 2.1506 -1.1495 -0.0055 25 1 -0.3633 -0.0048 1.0276 26 1 -0.3634 -0.8875 -0.5181 27 1 -0.3633 0.8924 -0.5096 28 1 1.6348 2.1407 0.0004 29 1 4.0983 2.1579 0.0111 30 1 8.1558 1.8454 -0.7232 31 1 5.6066 -1.9360 -1.4924 32 1 6.7521 -4.1072 -1.4984 33 1 2.8521 -3.3856 1.4587 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235890690.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:22 Heat of formation + Delta-G solvation = 25.843803 kcal Electronic energy + Delta-G solvation = -20567.114349 eV Core-core repulsion = 17278.583331 eV Total energy + Delta-G solvation = -3288.531018 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -48.77146 -39.49954 -38.22303 -36.23374 -34.46765 -32.50267 -31.80968 -31.17142 -29.36290 -28.13429 -24.62847 -23.72631 -22.91283 -21.40892 -20.91719 -18.44102 -17.74721 -17.04465 -16.25947 -15.86998 -15.57440 -15.45691 -14.59831 -13.98424 -13.84297 -13.65617 -13.48103 -13.46241 -13.25719 -12.94555 -12.75256 -12.52529 -12.27703 -11.97604 -11.84609 -11.64658 -11.45116 -11.32777 -11.01517 -10.81462 -10.47096 -10.14206 -9.70091 -8.89465 -8.79742 -8.49264 -8.29342 -7.64280 -7.31401 -4.81585 0.93209 1.35573 2.18629 2.43618 2.79865 2.85047 2.96262 3.05014 3.20969 3.65969 3.99644 4.02159 4.23921 4.35783 4.96618 5.04641 5.10554 5.45092 5.61821 5.67539 5.74128 5.93263 5.95382 6.13460 6.17646 6.23958 6.27730 6.35142 6.41903 6.52812 6.67709 6.85062 6.90561 7.06161 7.21366 7.36233 7.55894 7.62228 7.93666 8.15753 8.35207 9.16375 9.67038 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.015243 B = 0.006499 C = 0.004828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.428228 B = 4307.187285 C = 5798.087121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.012 4.012 3 C -0.110 4.110 4 C -0.205 4.205 5 C 0.062 3.938 6 C -0.424 4.424 7 H 0.105 0.895 8 C 0.083 3.917 9 N -0.782 5.782 10 Si 0.910 3.090 11 H -0.265 1.265 12 H -0.285 1.285 13 H -0.245 1.245 14 C 0.026 3.974 15 C 0.012 3.988 16 C -0.032 4.032 17 C -0.156 4.156 18 C 0.125 3.875 19 F -0.138 7.138 20 C -0.075 4.075 21 C 0.268 3.732 22 N -0.428 5.428 23 C -0.034 4.034 24 N -0.435 5.435 25 H 0.053 0.947 26 H 0.059 0.941 27 H 0.054 0.946 28 H 0.106 0.894 29 H 0.115 0.885 30 H 0.292 0.708 31 H 0.153 0.847 32 H 0.142 0.858 33 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.875 -0.522 -3.356 4.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.152 4.152 3 C -0.130 4.130 4 C -0.230 4.230 5 C 0.057 3.943 6 C -0.451 4.451 7 H 0.123 0.877 8 C -0.140 4.140 9 N -0.403 5.403 10 Si 0.736 3.264 11 H -0.191 1.191 12 H -0.212 1.212 13 H -0.168 1.168 14 C -0.114 4.114 15 C 0.011 3.989 16 C -0.051 4.051 17 C -0.175 4.175 18 C 0.102 3.898 19 F -0.117 7.117 20 C -0.079 4.079 21 C -0.047 4.047 22 N -0.103 5.103 23 C -0.055 4.055 24 N -0.143 5.143 25 H 0.072 0.928 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.124 0.876 29 H 0.132 0.868 30 H 0.103 0.897 31 H 0.170 0.830 32 H 0.160 0.840 33 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -3.609 -2.533 -2.322 4.983 hybrid contribution 0.657 1.704 -0.616 1.927 sum -2.951 -0.829 -2.938 4.246 Atomic orbital electron populations 1.20308 0.90952 1.01267 1.00833 1.20264 0.95143 0.88131 1.11695 1.21218 0.94805 0.97739 0.99259 1.21241 0.94108 0.97709 1.09945 1.18378 0.94350 0.90994 0.90566 1.19574 0.89474 1.06180 1.29862 0.87698 1.26262 0.94814 0.96680 0.96246 1.69640 1.08823 1.28128 1.33727 0.86360 0.79788 0.80385 0.79900 1.19142 1.21224 1.16791 1.19167 0.88261 0.90600 1.13364 1.18302 0.94326 0.91782 0.94509 1.21623 0.92388 0.95522 0.95592 1.20952 1.02678 0.92533 1.01344 1.17656 0.92196 0.81688 0.98214 1.91486 1.80972 1.43773 1.95441 1.15832 0.99594 0.91991 1.00501 1.25440 0.93408 0.92787 0.93096 1.81142 1.08870 1.10041 1.10281 1.21198 0.97885 0.89294 0.97116 1.66861 1.09355 1.29457 1.08653 0.92846 0.92227 0.92709 0.87618 0.86778 0.89710 0.82953 0.84040 0.84346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.16 10.15 36.01 0.37 -0.79 16 2 C -0.01 -0.24 6.79 -82.40 -0.56 -0.79 16 3 C -0.11 -2.12 9.64 -39.84 -0.38 -2.51 16 4 C -0.20 -4.31 7.31 -38.98 -0.29 -4.60 16 5 C 0.06 1.36 5.12 -106.41 -0.54 0.82 16 6 C -0.42 -9.46 7.20 -37.90 -0.27 -9.73 16 7 H 0.11 2.44 6.72 -52.48 -0.35 2.08 16 8 C 0.08 1.82 5.44 -17.32 -0.09 1.72 16 9 N -0.78 -17.69 13.93 55.55 0.77 -16.92 16 10 Si 0.91 17.71 24.53 -169.99 -4.17 13.54 16 11 H -0.27 -5.06 6.46 56.52 0.37 -4.69 16 12 H -0.29 -5.39 7.11 56.52 0.40 -4.98 16 13 H -0.24 -4.93 7.00 56.52 0.40 -4.53 16 14 C 0.03 0.54 6.42 -82.24 -0.53 0.01 16 15 C 0.01 0.22 5.25 -104.96 -0.55 -0.33 16 16 C -0.03 -0.53 7.85 -39.10 -0.31 -0.84 16 17 C -0.16 -2.27 9.99 -39.63 -0.40 -2.67 16 18 C 0.12 1.90 7.28 -38.82 -0.28 1.62 16 19 F -0.14 -2.12 16.80 2.25 0.04 -2.09 16 20 C -0.07 -1.19 5.73 -106.88 -0.61 -1.80 16 21 C 0.27 4.46 14.96 -22.49 -0.34 4.12 16 22 N -0.43 -7.65 18.53 41.82 0.78 -6.87 16 23 C -0.03 -0.56 9.36 -38.74 -0.36 -0.93 16 24 N -0.44 -9.04 10.05 -5.45 -0.05 -9.10 16 25 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 27 H 0.05 0.72 8.07 -51.93 -0.42 0.30 16 28 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 29 H 0.11 2.35 4.52 -52.49 -0.24 2.12 16 30 H 0.29 5.99 8.29 -40.82 -0.34 5.65 16 31 H 0.15 2.60 6.74 -52.48 -0.35 2.24 16 32 H 0.14 1.70 8.06 -52.49 -0.42 1.28 16 33 H 0.14 2.28 8.06 -52.48 -0.42 1.85 16 LS Contribution 297.71 15.07 4.49 4.49 Total: -1.00 -24.27 297.71 -5.96 -30.23 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -2.65 Total: 3.41 kcal Atomic # 6 Polarization: -11.54 SS G_CDS: -5.15 Total: -16.69 kcal Atomic # 7 Polarization: -34.38 SS G_CDS: 1.49 Total: -32.88 kcal Atomic # 9 Polarization: -2.12 SS G_CDS: 0.04 Total: -2.09 kcal Atomic # 14 Polarization: 17.71 SS G_CDS: -4.17 Total: 13.54 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -24.27 -5.96 -30.23 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235890690.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.074 kcal (2) G-P(sol) polarization free energy of solvation -24.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds