Wall clock time and date at job start Tue Mar 31 2020 05:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 120.00026 * 2 1 4 4 H 1.48501 * 109.47191 * 270.00453 * 3 2 1 5 5 H 1.48501 * 109.47193 * 30.00190 * 3 2 1 6 6 H 1.48497 * 109.47370 * 150.00050 * 3 2 1 7 7 C 1.37876 * 120.00103 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00098 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99600 * 359.97438 * 7 2 1 10 10 C 1.50704 * 109.46792 * 179.97438 * 9 7 2 11 11 C 1.38339 * 119.87135 * 90.00180 * 10 9 7 12 12 C 1.38003 * 120.12548 * 180.25695 * 11 10 9 13 13 C 1.39406 * 119.86869 * 359.51311 * 12 11 10 14 14 C 1.48276 * 120.12057 * 180.21303 * 13 12 11 15 15 C 1.39522 * 119.96405 * 179.97438 * 14 13 12 16 16 C 1.37644 * 120.02436 * 179.76222 * 15 14 13 17 17 C 1.39765 * 119.96930 * 0.51069 * 16 15 14 18 18 C 1.47592 * 120.02823 * 179.71927 * 17 16 15 19 19 O 1.21496 * 120.00182 * 180.02562 * 18 17 16 20 20 O 1.34739 * 120.00173 * 0.02562 * 18 17 16 21 21 C 1.39760 * 119.94600 * 359.74195 * 17 16 15 22 22 C 1.37648 * 119.96517 * 0.02562 * 21 17 16 23 23 C 1.39403 * 119.74962 * 0.46074 * 13 12 11 24 24 C 1.38001 * 119.86893 * 359.77270 * 23 13 12 25 25 H 0.97001 * 119.99815 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47649 * 60.00337 * 9 7 2 27 27 H 1.08992 * 109.47343 * 299.99719 * 9 7 2 28 28 H 1.08002 * 119.93295 * 359.97216 * 11 10 9 29 29 H 1.08004 * 120.06007 * 179.74086 * 12 11 10 30 30 H 1.07989 * 119.98547 * 0.02562 * 15 14 13 31 31 H 1.07996 * 120.01457 * 180.23131 * 16 15 14 32 32 H 0.96702 * 117.00497 * 179.97438 * 20 18 17 33 33 H 1.08003 * 120.01926 * 180.02562 * 21 17 16 34 34 H 1.07998 * 119.98548 * 179.97438 * 22 21 17 35 35 H 1.07994 * 120.06575 * 179.79577 * 23 13 12 36 36 H 1.07994 * 119.93503 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2303 -3.6446 -0.0018 11 6 2.6790 -4.1688 1.1972 12 6 3.5798 -5.2142 1.2022 13 6 4.0299 -5.7486 -0.0042 14 6 4.9941 -6.8750 -0.0053 15 6 5.4420 -7.4077 -1.2146 16 6 6.3409 -8.4501 -1.2172 17 6 6.7967 -8.9819 -0.0077 18 6 7.7558 -10.1038 -0.0089 19 8 8.1513 -10.5660 1.0427 20 8 8.1927 -10.6153 -1.1763 21 6 6.3432 -8.4509 1.2029 22 6 5.4480 -7.4053 1.2026 23 6 3.5739 -5.2166 -1.2093 24 6 2.6768 -4.1680 -1.2020 25 1 -0.4850 0.8401 0.0004 26 1 0.6240 -2.5567 -0.8903 27 1 0.6248 -2.5571 0.8896 28 1 2.3270 -3.7561 2.1311 29 1 3.9326 -5.6200 2.1389 30 1 5.0865 -6.9992 -2.1489 31 1 6.6903 -8.8598 -2.1533 32 1 8.8206 -11.3491 -1.1266 33 1 6.6950 -8.8606 2.1382 34 1 5.0970 -6.9949 2.1379 35 1 3.9217 -5.6245 -2.1468 36 1 2.3232 -3.7547 -2.1349 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236060030.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:00 Heat of formation + Delta-G solvation = -56.185237 kcal Electronic energy + Delta-G solvation = -19766.635533 eV Core-core repulsion = 16565.715023 eV Total energy + Delta-G solvation = -3200.920510 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.104 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.63100 -39.49160 -38.04173 -36.34026 -33.91586 -32.45080 -31.54079 -30.28907 -30.18700 -27.16263 -24.73997 -23.49811 -22.93318 -21.55579 -21.19227 -20.07877 -18.37718 -17.83244 -16.60153 -16.35980 -15.86062 -15.48260 -15.27808 -14.63787 -14.17380 -14.07406 -13.92750 -13.77835 -13.30009 -13.11979 -12.83761 -12.58093 -12.09367 -11.87998 -11.70921 -11.50559 -11.26379 -11.21099 -10.84665 -10.74741 -10.59668 -10.26205 -9.83372 -9.60009 -9.22081 -9.22001 -8.50656 -8.46672 -7.60826 -6.11663 -4.16399 0.28067 1.21136 1.79679 1.90969 2.54724 2.76741 3.25919 3.32580 3.36455 3.64808 4.31962 4.47844 4.54592 4.63092 4.73796 4.89510 5.12716 5.22574 5.24472 5.30974 5.35348 5.62204 5.83117 5.84646 5.89750 6.00353 6.07139 6.13632 6.19269 6.34836 6.46628 6.51224 6.68527 6.93693 7.01516 7.04131 7.39195 7.55056 7.62146 7.71614 7.83540 8.21640 8.88760 9.48051 10.97990 Molecular weight = 282.10amu Principal moments of inertia in cm(-1) A = 0.039946 B = 0.002738 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.780890 B =10222.860223 C =10259.212936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.896 3.104 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.514 4.514 8 H 0.058 0.942 9 C 0.043 3.957 10 C -0.014 4.014 11 C -0.127 4.127 12 C -0.098 4.098 13 C -0.106 4.106 14 C 0.027 3.973 15 C -0.139 4.139 16 C -0.053 4.053 17 C -0.152 4.152 18 C 0.530 3.470 19 O -0.520 6.520 20 O -0.514 6.514 21 C -0.046 4.046 22 C -0.137 4.137 23 C -0.098 4.098 24 C -0.127 4.127 25 H 0.263 0.737 26 H 0.031 0.969 27 H 0.031 0.969 28 H 0.123 0.877 29 H 0.118 0.882 30 H 0.135 0.865 31 H 0.137 0.863 32 H 0.412 0.588 33 H 0.136 0.864 34 H 0.136 0.864 35 H 0.117 0.883 36 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.709 -17.681 -1.957 21.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.552 4.552 8 H 0.076 0.924 9 C 0.007 3.993 10 C -0.014 4.014 11 C -0.145 4.145 12 C -0.116 4.116 13 C -0.106 4.106 14 C 0.027 3.973 15 C -0.157 4.157 16 C -0.071 4.071 17 C -0.153 4.153 18 C 0.375 3.625 19 O -0.411 6.411 20 O -0.325 6.325 21 C -0.064 4.064 22 C -0.154 4.154 23 C -0.115 4.115 24 C -0.145 4.145 25 H 0.073 0.927 26 H 0.049 0.951 27 H 0.049 0.951 28 H 0.141 0.859 29 H 0.135 0.865 30 H 0.153 0.847 31 H 0.155 0.845 32 H 0.271 0.729 33 H 0.154 0.846 34 H 0.154 0.846 35 H 0.135 0.865 36 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 11.381 -17.361 -1.694 20.828 hybrid contribution 0.883 0.503 0.021 1.016 sum 12.264 -16.858 -1.673 20.914 Atomic orbital electron populations 1.69954 1.06048 1.26960 1.50195 1.25013 0.94903 0.99320 0.95039 0.86518 0.79837 0.83024 0.78242 1.20530 1.21102 1.19760 1.21019 0.93045 0.89699 1.51441 0.92407 1.18435 0.92619 0.89613 0.98653 1.20901 0.94671 0.93933 0.91920 1.21078 0.98268 0.96522 0.98661 1.21158 0.97230 0.96597 0.96565 1.18523 1.00298 0.97677 0.94119 1.19232 0.92549 0.92535 0.93035 1.21258 0.98774 0.97413 0.98218 1.21338 0.94232 0.94261 0.97289 1.18975 1.02444 0.98704 0.95190 1.20955 0.79019 0.81701 0.80827 1.90883 1.56748 1.60416 1.33012 1.84573 1.60913 1.51744 1.35308 1.21148 0.94113 0.94075 0.97068 1.21214 0.98686 0.97200 0.98326 1.21148 0.97263 0.96586 0.96550 1.21071 0.98338 0.96500 0.98635 0.92737 0.95095 0.95075 0.85920 0.86461 0.84724 0.84535 0.72925 0.84580 0.84594 0.86463 0.85925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.73 13.29 55.43 0.74 -25.00 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.51 -13.93 9.09 -34.44 -0.31 -14.24 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 9 C 0.04 1.07 5.10 -29.03 -0.15 0.92 16 10 C -0.01 -0.29 5.07 -104.55 -0.53 -0.82 16 11 C -0.13 -2.31 9.68 -39.63 -0.38 -2.70 16 12 C -0.10 -1.50 9.43 -39.23 -0.37 -1.87 16 13 C -0.11 -1.58 5.88 -104.90 -0.62 -2.20 16 14 C 0.03 0.34 5.88 -104.82 -0.62 -0.28 16 15 C -0.14 -1.54 9.41 -39.32 -0.37 -1.91 16 16 C -0.05 -0.54 9.60 -39.23 -0.38 -0.92 16 17 C -0.15 -1.69 5.88 -104.94 -0.62 -2.31 16 18 C 0.53 5.74 8.27 34.55 0.29 6.03 16 19 O -0.52 -6.98 17.12 -19.26 -0.33 -7.31 16 20 O -0.51 -3.93 12.67 -40.60 -0.51 -4.44 16 21 C -0.05 -0.51 9.58 -39.23 -0.38 -0.89 16 22 C -0.14 -1.57 9.41 -39.32 -0.37 -1.94 16 23 C -0.10 -1.49 9.43 -39.23 -0.37 -1.86 16 24 C -0.13 -2.31 9.68 -39.63 -0.38 -2.69 16 25 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 26 H 0.03 0.80 8.08 -51.93 -0.42 0.38 16 27 H 0.03 0.80 8.08 -51.93 -0.42 0.38 16 28 H 0.12 2.16 8.06 -52.49 -0.42 1.73 16 29 H 0.12 1.47 6.19 -52.48 -0.33 1.14 16 30 H 0.14 1.28 6.19 -52.49 -0.32 0.96 16 31 H 0.14 1.12 7.60 -52.49 -0.40 0.72 16 32 H 0.41 1.28 9.11 45.56 0.42 1.69 16 33 H 0.14 1.39 7.64 -52.48 -0.40 0.99 16 34 H 0.14 1.36 6.19 -52.49 -0.32 1.04 16 35 H 0.12 1.44 6.19 -52.49 -0.33 1.11 16 36 H 0.12 2.14 8.06 -52.49 -0.42 1.72 16 LS Contribution 318.20 15.07 4.80 4.80 Total: -1.00 -31.55 318.20 -8.90 -40.45 By element: Atomic # 1 Polarization: 4.52 SS G_CDS: -2.91 Total: 1.61 kcal Atomic # 6 Polarization: -20.48 SS G_CDS: -5.65 Total: -26.14 kcal Atomic # 7 Polarization: -25.73 SS G_CDS: 0.74 Total: -25.00 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: -0.84 Total: -11.75 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.55 -8.90 -40.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236060030.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.740 kcal (2) G-P(sol) polarization free energy of solvation -31.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds