Wall clock time and date at job start Tue Mar 31 2020 05:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 N 1.32928 * 119.63260 * 76.70103 * 3 2 1 5 5 C 1.31329 * 121.77156 * 180.02562 * 4 3 2 6 6 C 1.39706 * 120.81512 * 359.97438 * 5 4 3 7 7 C 1.48280 * 120.41452 * 180.02562 * 6 5 4 8 8 C 1.39416 * 120.12895 * 179.70439 * 7 6 5 9 9 C 1.37983 * 119.87284 * 179.72375 * 8 7 6 10 10 C 1.38359 * 120.12318 * 0.54810 * 9 8 7 11 11 C 1.38316 * 120.25642 * 359.72725 * 10 9 8 12 12 C 1.50698 * 119.93305 * 179.97438 * 11 10 9 13 13 C 1.50698 * 109.47666 * 270.01953 * 12 11 10 14 14 H 1.08002 * 119.99436 * 0.02562 * 13 12 11 15 15 C 1.37873 * 120.00273 * 179.97438 * 13 12 11 16 16 N 1.31514 * 119.99759 * 180.02562 * 15 13 12 17 17 Si 1.86794 * 120.00110 * 0.02562 * 15 13 12 18 18 H 1.48505 * 109.47113 * 89.99345 * 17 15 13 19 19 H 1.48494 * 109.47475 * 209.99443 * 17 15 13 20 20 H 1.48501 * 109.47110 * 330.00100 * 17 15 13 21 21 C 1.38016 * 120.12861 * 359.97438 * 11 10 9 22 22 C 1.39703 * 119.17859 * 0.02562 * 6 5 4 23 23 C 1.38544 * 118.37827 * 0.28127 * 22 6 5 24 24 F 1.35101 * 120.43585 * 179.72072 * 23 22 6 25 25 H 1.08007 * 119.59228 * 180.02562 * 5 4 3 26 26 H 1.08000 * 120.06738 * 359.97438 * 8 7 6 27 27 H 1.08000 * 119.94263 * 180.25619 * 9 8 7 28 28 H 1.07997 * 119.87283 * 179.70283 * 10 9 8 29 29 H 1.08998 * 109.47093 * 30.02826 * 12 11 10 30 30 H 1.09010 * 109.46746 * 150.02295 * 12 11 10 31 31 H 0.97003 * 119.99663 * 180.02562 * 16 15 13 32 32 H 1.07996 * 120.06966 * 179.97438 * 21 11 10 33 33 H 1.08002 * 120.80688 * 179.97438 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 7 3.2254 -0.2649 -1.1244 5 6 4.5377 -0.2760 -1.1720 6 6 5.2976 -0.0060 -0.0312 7 6 6.7789 -0.0205 -0.0951 8 6 7.5313 0.2559 1.0456 9 6 8.9095 0.2354 0.9815 10 6 9.5449 -0.0476 -0.2146 11 6 8.8036 -0.3169 -1.3509 12 6 9.5031 -0.6236 -2.6500 13 6 9.7357 0.6568 -3.4099 14 1 9.4099 1.5986 -2.9935 15 6 10.3653 0.6261 -4.6361 16 7 10.5687 1.7436 -5.2989 17 14 10.9294 -1.0027 -5.3558 18 1 9.8389 -1.5841 -6.1793 19 1 12.1266 -0.7803 -6.2057 20 1 11.2708 -1.9387 -4.2547 21 6 7.4245 -0.3053 -1.2972 22 6 4.6444 0.2777 1.1707 23 6 3.2591 0.2741 1.1841 24 9 2.5850 0.5374 2.3250 25 1 5.0358 -0.4958 -2.1049 26 1 7.0365 0.4816 1.9786 27 1 9.4935 0.4452 1.8654 28 1 10.6238 -0.0578 -0.2614 29 1 10.4602 -1.1024 -2.4430 30 1 8.8836 -1.2930 -3.2470 31 1 11.0113 1.7220 -6.1618 32 1 6.8466 -0.5153 -2.1851 33 1 5.2058 0.4898 2.0687 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001238991202.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:35 Heat of formation + Delta-G solvation = 42.683851 kcal Electronic energy + Delta-G solvation = -19683.681694 eV Core-core repulsion = 16395.880915 eV Total energy + Delta-G solvation = -3287.800779 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.48027 -40.72933 -38.86301 -36.80474 -34.28708 -33.09999 -32.10948 -31.52519 -29.71239 -27.80228 -25.35395 -24.36186 -22.94661 -21.72243 -20.40634 -19.87637 -17.74029 -17.52318 -16.89629 -16.66779 -16.39951 -15.17103 -14.99197 -14.71165 -14.47360 -14.28088 -13.90498 -13.81058 -13.45494 -13.36221 -13.09754 -12.93096 -12.61016 -12.52560 -12.21350 -11.80828 -11.40683 -11.12090 -10.61448 -10.53606 -10.16430 -10.10837 -10.07187 -9.59221 -9.49150 -8.69184 -8.36605 -8.04594 -6.18040 -4.18895 -0.15208 0.60983 1.62552 1.74856 2.20717 2.60672 3.03876 3.20992 3.30050 3.30453 3.43434 3.57020 4.07059 4.16527 4.26434 4.31578 4.39489 4.63551 4.98039 5.04925 5.15654 5.22112 5.30369 5.50827 5.59228 5.70766 5.91568 6.04001 6.18608 6.31583 6.63351 6.67824 6.76504 6.85173 7.02766 7.24581 7.29455 7.33475 7.56116 8.36124 8.86070 9.41387 10.94562 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.022411 B = 0.003720 C = 0.003331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.113932 B = 7524.528769 C = 8403.119829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.385 5.385 2 C 0.269 3.731 3 C 0.141 3.859 4 N -0.415 5.415 5 C 0.105 3.895 6 C -0.008 4.008 7 C -0.076 4.076 8 C -0.119 4.119 9 C -0.122 4.122 10 C -0.099 4.099 11 C -0.028 4.028 12 C 0.013 3.987 13 C -0.519 4.519 14 H 0.074 0.926 15 C 0.071 3.929 16 N -0.896 5.896 17 Si 0.877 3.123 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.264 1.264 21 C -0.093 4.093 22 C -0.114 4.114 23 C 0.109 3.891 24 F -0.119 7.119 25 H 0.184 0.816 26 H 0.118 0.882 27 H 0.120 0.880 28 H 0.124 0.876 29 H 0.030 0.970 30 H 0.026 0.974 31 H 0.266 0.734 32 H 0.128 0.872 33 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.672 -4.854 13.873 16.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.061 5.061 2 C -0.048 4.048 3 C 0.003 3.997 4 N -0.123 5.123 5 C -0.056 4.056 6 C -0.011 4.011 7 C -0.077 4.077 8 C -0.137 4.137 9 C -0.140 4.140 10 C -0.117 4.117 11 C -0.028 4.028 12 C -0.025 4.025 13 C -0.557 4.557 14 H 0.093 0.907 15 C -0.131 4.131 16 N -0.534 5.534 17 Si 0.704 3.296 18 H -0.200 1.200 19 H -0.212 1.212 20 H -0.189 1.189 21 C -0.111 4.111 22 C -0.140 4.140 23 C 0.085 3.915 24 F -0.097 7.097 25 H 0.201 0.799 26 H 0.136 0.864 27 H 0.138 0.862 28 H 0.142 0.858 29 H 0.049 0.951 30 H 0.044 0.956 31 H 0.075 0.925 32 H 0.146 0.854 33 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -9.889 -4.939 12.994 17.059 hybrid contribution 1.213 -0.377 0.398 1.331 sum -8.676 -5.316 13.392 16.819 Atomic orbital electron populations 1.81226 1.11294 1.07330 1.06295 1.24718 0.91429 0.94430 0.94239 1.16357 0.86756 1.06737 0.89849 1.67605 1.10651 1.09658 1.24425 1.23191 0.87363 0.95942 0.99151 1.20034 0.94623 0.93762 0.92674 1.18388 0.89038 1.05118 0.95146 1.20979 0.94110 1.01583 0.97050 1.21016 0.94104 1.00845 0.98034 1.21313 1.00499 0.97840 0.92061 1.20271 0.92918 0.93389 0.96235 1.18855 0.95499 0.98278 0.89820 1.20884 1.39181 0.92581 1.03005 0.90740 1.24994 0.95159 0.96304 0.96647 1.69892 1.42474 1.26538 1.14508 0.86821 0.78765 0.84461 0.79566 1.20034 1.21207 1.18907 1.21171 0.94720 0.99131 0.96033 1.21678 0.91292 1.00699 1.00341 1.18364 0.90490 1.00566 0.82113 1.91575 1.79988 1.90860 1.47307 0.79930 0.86390 0.86156 0.85764 0.95136 0.95552 0.92451 0.85425 0.82071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.38 -5.44 18.54 41.84 0.78 -4.66 16 2 C 0.27 3.42 15.17 -22.47 -0.34 3.08 16 3 C 0.14 1.63 6.59 -84.88 -0.56 1.07 16 4 N -0.42 -5.04 10.26 -10.78 -0.11 -5.15 16 5 C 0.11 1.17 10.59 -17.22 -0.18 0.98 16 6 C -0.01 -0.09 5.90 -104.67 -0.62 -0.70 16 7 C -0.08 -0.96 5.88 -104.90 -0.62 -1.58 16 8 C -0.12 -1.39 9.44 -39.24 -0.37 -1.76 16 9 C -0.12 -1.54 10.03 -39.63 -0.40 -1.94 16 10 C -0.10 -1.54 9.69 -39.51 -0.38 -1.93 16 11 C -0.03 -0.50 5.06 -104.68 -0.53 -1.03 16 12 C 0.01 0.26 4.17 -29.04 -0.12 0.14 16 13 C -0.52 -13.50 9.65 -34.44 -0.33 -13.83 16 14 H 0.07 2.14 7.98 -52.49 -0.42 1.72 16 15 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 16 N -0.90 -26.11 13.96 55.43 0.77 -25.33 16 17 Si 0.88 19.99 27.47 -169.99 -4.67 15.32 16 18 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 19 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 20 H -0.26 -5.71 6.54 56.52 0.37 -5.34 16 21 C -0.09 -1.40 9.09 -39.24 -0.36 -1.76 16 22 C -0.11 -1.05 9.51 -38.92 -0.37 -1.42 16 23 C 0.11 1.10 7.30 -38.88 -0.28 0.82 16 24 F -0.12 -1.21 16.81 2.25 0.04 -1.18 16 25 H 0.18 1.80 6.21 -52.48 -0.33 1.47 16 26 H 0.12 1.00 6.26 -52.49 -0.33 0.67 16 27 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 28 H 0.12 1.87 8.06 -52.49 -0.42 1.44 16 29 H 0.03 0.64 7.14 -51.93 -0.37 0.27 16 30 H 0.03 0.54 7.51 -51.92 -0.39 0.15 16 31 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 32 H 0.13 1.77 6.22 -52.49 -0.33 1.44 16 33 H 0.16 1.09 6.31 -52.49 -0.33 0.76 16 LS Contribution 303.39 15.07 4.57 4.57 Total: -1.00 -29.40 303.39 -6.68 -36.08 By element: Atomic # 1 Polarization: 0.85 SS G_CDS: -2.50 Total: -1.65 kcal Atomic # 6 Polarization: -12.45 SS G_CDS: -5.56 Total: -18.01 kcal Atomic # 7 Polarization: -36.58 SS G_CDS: 1.44 Total: -35.14 kcal Atomic # 9 Polarization: -1.21 SS G_CDS: 0.04 Total: -1.18 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -4.67 Total: 15.32 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -29.40 -6.68 -36.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238991202.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.765 kcal (2) G-P(sol) polarization free energy of solvation -29.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds