Wall clock time and date at job start Tue Mar 31 2020 05:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30763 * 1 3 3 Si 1.86800 * 119.99880 * 2 1 4 4 H 1.48498 * 109.46915 * 240.00005 * 3 2 1 5 5 H 1.48496 * 109.47204 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47005 * 120.00096 * 3 2 1 7 7 C 1.40098 * 120.00028 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00425 * 161.90742 * 7 2 1 9 9 C 1.40757 * 119.99860 * 341.89978 * 7 2 1 10 10 C 1.40877 * 120.62756 * 335.78097 * 9 7 2 11 11 C 1.36306 * 119.96024 * 180.25392 * 10 9 7 12 12 C 1.38822 * 121.34305 * 359.43432 * 11 10 9 13 13 C 1.50696 * 119.35102 * 180.29302 * 12 11 10 14 14 F 1.39899 * 109.47200 * 270.26969 * 13 12 11 15 15 F 1.39903 * 109.47133 * 30.27230 * 13 12 11 16 16 F 1.39901 * 109.46926 * 150.27168 * 13 12 11 17 17 C 1.37883 * 121.29945 * 0.56997 * 12 11 10 18 18 C 1.39563 * 119.91604 * 359.72095 * 17 12 11 19 19 C 1.47138 * 120.63499 * 180.02562 * 18 17 12 20 20 C 1.32783 * 124.63299 * 104.68253 * 19 18 17 21 21 C 1.51113 * 110.72718 * 179.84318 * 20 19 18 22 22 C 1.54571 * 104.91374 * 343.79064 * 21 20 19 23 23 C 1.51115 * 124.63477 * 284.98109 * 19 18 17 24 24 H 0.96995 * 120.00135 * 359.97438 * 1 2 3 25 25 H 1.08005 * 120.01591 * 359.97131 * 10 9 7 26 26 H 1.08002 * 119.32784 * 179.69555 * 11 10 9 27 27 H 1.07993 * 120.04092 * 179.74417 * 17 12 11 28 28 H 1.07996 * 124.63347 * 0.02562 * 20 19 18 29 29 H 1.09007 * 110.51805 * 224.83309 * 21 20 19 30 30 H 1.08994 * 110.24621 * 102.60820 * 21 20 19 31 31 H 1.09011 * 110.97533 * 266.73719 * 22 21 20 32 32 H 1.08991 * 110.97913 * 142.95266 * 22 21 20 33 33 H 1.09005 * 110.36226 * 315.45169 * 23 19 18 34 34 H 1.08996 * 110.36483 * 77.65852 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2416 1.6178 0.0000 4 1 3.0953 1.6964 -1.2125 5 1 1.2766 2.7464 -0.0006 6 1 3.0954 1.6964 1.2125 7 6 2.0081 -1.2133 -0.0005 8 1 3.0481 -1.2364 -0.2910 9 6 1.3566 -2.4023 0.3776 10 6 0.2244 -2.3651 1.2152 11 6 -0.3929 -3.5252 1.5771 12 6 0.0633 -4.7567 1.1274 13 6 -0.6574 -6.0108 1.5503 14 9 -0.0998 -6.4903 2.7404 15 9 -2.0120 -5.7247 1.7521 16 9 -0.5296 -6.9815 0.5511 17 6 1.1663 -4.8556 0.3060 18 6 1.8427 -3.7018 -0.0930 19 6 3.0211 -3.7889 -0.9697 20 6 3.0243 -3.4843 -2.2621 21 6 4.3999 -3.6835 -2.8552 22 6 5.3497 -3.7647 -1.6384 23 6 4.3916 -4.2433 -0.5238 24 1 -0.4850 0.8400 0.0004 25 1 -0.1514 -1.4182 1.5739 26 1 -1.2572 -3.4851 2.2236 27 1 1.5061 -5.8245 -0.0286 28 1 2.1624 -3.1384 -2.8133 29 1 4.6682 -2.8390 -3.4901 30 1 4.4339 -4.6117 -3.4255 31 1 5.7654 -2.7852 -1.4018 32 1 6.1427 -4.4923 -1.8104 33 1 4.6543 -3.7795 0.4270 34 1 4.4213 -5.3293 -0.4363 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239789607.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:22 Heat of formation + Delta-G solvation = -138.166798 kcal Electronic energy + Delta-G solvation = -21846.382741 eV Core-core repulsion = 18100.050504 eV Total energy + Delta-G solvation = -3746.332238 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.093 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.30677 -46.84880 -46.77908 -38.34350 -36.88336 -34.14113 -31.05326 -30.14123 -27.85392 -27.27707 -26.50280 -23.67054 -21.44379 -20.74516 -20.16723 -18.03583 -17.66148 -17.56023 -17.39632 -16.57931 -15.52539 -15.00317 -14.71852 -14.19128 -13.90909 -13.68661 -13.35686 -13.29384 -13.07118 -13.00686 -12.82171 -12.44301 -12.25202 -11.95766 -11.67924 -11.46381 -11.31957 -11.09719 -11.08713 -10.79451 -10.66557 -10.64361 -10.58246 -10.00290 -9.63350 -9.46406 -7.93654 -7.77233 -7.49626 -7.10027 -4.68472 2.34859 2.70434 2.89815 2.91286 2.98377 3.05854 3.65831 3.68232 4.22713 4.95466 5.03040 5.10027 5.20899 5.28908 5.40491 5.54505 5.87225 5.97506 6.05953 6.12948 6.16875 6.24070 6.35643 6.41653 6.55302 6.68617 6.74216 6.91576 7.03018 7.27301 7.36108 7.46245 7.68725 7.78682 7.80729 7.93021 8.30510 8.51690 8.64724 9.77906 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.013464 B = 0.007047 C = 0.004982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.177863 B = 3972.193920 C = 5618.333260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.764 5.764 2 C 0.073 3.927 3 Si 0.914 3.086 4 H -0.261 1.261 5 H -0.275 1.275 6 H -0.259 1.259 7 C -0.420 4.420 8 H 0.089 0.911 9 C 0.145 3.855 10 C -0.179 4.179 11 C -0.048 4.048 12 C -0.329 4.329 13 C 0.514 3.486 14 F -0.197 7.197 15 F -0.194 7.194 16 F -0.195 7.195 17 C -0.020 4.020 18 C -0.181 4.181 19 C -0.037 4.037 20 C -0.184 4.184 21 C -0.091 4.091 22 C -0.123 4.123 23 C -0.093 4.093 24 H 0.289 0.711 25 H 0.125 0.875 26 H 0.095 0.905 27 H 0.099 0.901 28 H 0.119 0.881 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.145 -2.801 -0.968 5.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.386 5.386 2 C -0.149 4.149 3 Si 0.737 3.263 4 H -0.185 1.185 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.446 4.446 8 H 0.107 0.893 9 C 0.141 3.859 10 C -0.198 4.198 11 C -0.067 4.067 12 C -0.331 4.331 13 C 0.461 3.539 14 F -0.179 7.179 15 F -0.175 7.175 16 F -0.177 7.177 17 C -0.039 4.039 18 C -0.182 4.182 19 C -0.037 4.037 20 C -0.202 4.202 21 C -0.128 4.128 22 C -0.161 4.161 23 C -0.130 4.130 24 H 0.101 0.899 25 H 0.142 0.858 26 H 0.113 0.887 27 H 0.117 0.883 28 H 0.137 0.863 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.910 -2.667 -0.976 4.832 hybrid contribution -0.021 0.502 0.058 0.506 sum 3.888 -2.165 -0.917 4.544 Atomic orbital electron populations 1.69785 1.07914 1.30473 1.30418 1.26149 0.94827 1.02049 0.91901 0.86246 0.80275 0.79286 0.80519 1.18483 1.19936 1.18338 1.19696 0.98638 0.90758 1.35541 0.89338 1.18730 0.89748 0.90586 0.86827 1.20881 0.99859 0.96685 1.02336 1.20008 0.97593 0.91672 0.97440 1.18766 1.06099 0.90514 1.17729 1.18627 0.76518 0.84866 0.73892 1.93130 1.85371 1.90076 1.49277 1.93087 1.35676 1.93633 1.95132 1.93082 1.95780 1.66866 1.61935 1.20204 0.92937 0.96627 0.94106 1.19240 0.99802 0.92480 1.06691 1.20284 0.92914 0.97118 0.93403 1.23507 0.97104 1.03973 0.95650 1.21199 0.93561 1.00647 0.97401 1.22397 0.97157 1.00945 0.95595 1.21300 0.92901 1.00067 0.98701 0.89934 0.85764 0.88673 0.88309 0.86271 0.92040 0.91850 0.91465 0.91848 0.91414 0.91528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -17.86 10.97 55.56 0.61 -17.25 16 2 C 0.07 1.66 5.15 -17.31 -0.09 1.57 16 3 Si 0.91 16.95 29.60 -169.99 -5.03 11.92 16 4 H -0.26 -4.81 7.11 56.52 0.40 -4.41 16 5 H -0.27 -4.96 7.11 56.52 0.40 -4.56 16 6 H -0.26 -4.79 7.11 56.52 0.40 -4.39 16 7 C -0.42 -10.04 8.58 -37.93 -0.33 -10.37 16 8 H 0.09 2.07 7.38 -52.49 -0.39 1.68 16 9 C 0.14 3.56 5.74 -104.61 -0.60 2.96 16 10 C -0.18 -4.35 8.66 -39.28 -0.34 -4.69 16 11 C -0.05 -1.11 9.26 -40.06 -0.37 -1.48 16 12 C -0.33 -7.36 5.46 -104.54 -0.57 -7.93 16 13 C 0.51 10.52 3.34 36.00 0.12 10.64 16 14 F -0.20 -3.92 17.30 2.25 0.04 -3.88 16 15 F -0.19 -3.88 16.40 2.25 0.04 -3.85 16 16 F -0.20 -3.87 16.40 2.25 0.04 -3.83 16 17 C -0.02 -0.45 9.12 -39.22 -0.36 -0.81 16 18 C -0.18 -4.15 5.85 -102.46 -0.60 -4.75 16 19 C -0.04 -0.75 4.48 -102.68 -0.46 -1.21 16 20 C -0.18 -3.46 10.70 -35.98 -0.39 -3.85 16 21 C -0.09 -1.37 6.80 -26.86 -0.18 -1.55 16 22 C -0.12 -1.77 7.16 -25.08 -0.18 -1.95 16 23 C -0.09 -1.56 6.74 -26.86 -0.18 -1.74 16 24 H 0.29 6.11 8.29 -40.82 -0.34 5.78 16 25 H 0.12 3.07 6.18 -52.48 -0.32 2.74 16 26 H 0.10 2.02 7.53 -52.49 -0.40 1.62 16 27 H 0.10 2.04 7.55 -52.49 -0.40 1.64 16 28 H 0.12 2.34 8.06 -52.49 -0.42 1.92 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.07 0.95 8.14 -51.92 -0.42 0.52 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 302.87 15.07 4.56 4.56 Total: -1.00 -24.50 302.87 -7.86 -32.37 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -3.60 Total: 5.12 kcal Atomic # 6 Polarization: -20.64 SS G_CDS: -4.52 Total: -25.16 kcal Atomic # 7 Polarization: -17.86 SS G_CDS: 0.61 Total: -17.25 kcal Atomic # 9 Polarization: -11.68 SS G_CDS: 0.11 Total: -11.56 kcal Atomic # 14 Polarization: 16.95 SS G_CDS: -5.03 Total: 11.92 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -24.50 -7.86 -32.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239789607.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.802 kcal (2) G-P(sol) polarization free energy of solvation -24.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds