Wall clock time and date at job start Tue Mar 31 2020 05:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30763 * 1 3 3 Si 1.86800 * 119.99880 * 2 1 4 4 H 1.48498 * 109.46915 * 240.00005 * 3 2 1 5 5 H 1.48496 * 109.47204 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47005 * 120.00096 * 3 2 1 7 7 C 1.40098 * 120.00028 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00425 * 161.90742 * 7 2 1 9 9 C 1.40757 * 119.99860 * 341.89978 * 7 2 1 10 10 C 1.40877 * 120.62756 * 335.78097 * 9 7 2 11 11 C 1.36306 * 119.96024 * 180.25392 * 10 9 7 12 12 C 1.38822 * 121.34305 * 359.43432 * 11 10 9 13 13 C 1.50696 * 119.35102 * 180.29302 * 12 11 10 14 14 F 1.39899 * 109.47200 * 270.26969 * 13 12 11 15 15 F 1.39903 * 109.47133 * 30.27230 * 13 12 11 16 16 F 1.39901 * 109.46926 * 150.27168 * 13 12 11 17 17 C 1.37883 * 121.29945 * 0.56997 * 12 11 10 18 18 C 1.39563 * 119.91604 * 359.72095 * 17 12 11 19 19 C 1.47138 * 120.63499 * 180.02562 * 18 17 12 20 20 C 1.32783 * 124.63299 * 104.68253 * 19 18 17 21 21 C 1.51113 * 110.72718 * 179.84318 * 20 19 18 22 22 C 1.54571 * 104.91374 * 343.79064 * 21 20 19 23 23 C 1.51115 * 124.63477 * 284.98109 * 19 18 17 24 24 H 0.96995 * 120.00135 * 359.97438 * 1 2 3 25 25 H 1.08005 * 120.01591 * 359.97131 * 10 9 7 26 26 H 1.08002 * 119.32784 * 179.69555 * 11 10 9 27 27 H 1.07993 * 120.04092 * 179.74417 * 17 12 11 28 28 H 1.07996 * 124.63347 * 0.02562 * 20 19 18 29 29 H 1.09007 * 110.51805 * 224.83309 * 21 20 19 30 30 H 1.08994 * 110.24621 * 102.60820 * 21 20 19 31 31 H 1.09011 * 110.97533 * 266.73719 * 22 21 20 32 32 H 1.08991 * 110.97913 * 142.95266 * 22 21 20 33 33 H 1.09005 * 110.36226 * 315.45169 * 23 19 18 34 34 H 1.08996 * 110.36483 * 77.65852 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2416 1.6178 0.0000 4 1 3.0953 1.6964 -1.2125 5 1 1.2766 2.7464 -0.0006 6 1 3.0954 1.6964 1.2125 7 6 2.0081 -1.2133 -0.0005 8 1 3.0481 -1.2364 -0.2910 9 6 1.3566 -2.4023 0.3776 10 6 0.2244 -2.3651 1.2152 11 6 -0.3929 -3.5252 1.5771 12 6 0.0633 -4.7567 1.1274 13 6 -0.6574 -6.0108 1.5503 14 9 -0.0998 -6.4903 2.7404 15 9 -2.0120 -5.7247 1.7521 16 9 -0.5296 -6.9815 0.5511 17 6 1.1663 -4.8556 0.3060 18 6 1.8427 -3.7018 -0.0930 19 6 3.0211 -3.7889 -0.9697 20 6 3.0243 -3.4843 -2.2621 21 6 4.3999 -3.6835 -2.8552 22 6 5.3497 -3.7647 -1.6384 23 6 4.3916 -4.2433 -0.5238 24 1 -0.4850 0.8400 0.0004 25 1 -0.1514 -1.4182 1.5739 26 1 -1.2572 -3.4851 2.2236 27 1 1.5061 -5.8245 -0.0286 28 1 2.1624 -3.1384 -2.8133 29 1 4.6682 -2.8390 -3.4901 30 1 4.4339 -4.6117 -3.4255 31 1 5.7654 -2.7852 -1.4018 32 1 6.1427 -4.4923 -1.8104 33 1 4.6543 -3.7795 0.4270 34 1 4.4213 -5.3293 -0.4363 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239789607.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:21 Heat of formation + Delta-G solvation = -146.385120 kcal Electronic energy + Delta-G solvation = -21846.739115 eV Core-core repulsion = 18100.050504 eV Total energy + Delta-G solvation = -3746.688611 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.093 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.95127 -48.48539 -48.41478 -39.90703 -38.42784 -35.89340 -32.70195 -31.89240 -29.20769 -28.89750 -28.07209 -25.39222 -23.12770 -22.48083 -21.42295 -19.66222 -19.32682 -19.27314 -19.07995 -18.13430 -17.21433 -16.30692 -16.17102 -15.82043 -15.57184 -15.32225 -15.04873 -14.93361 -14.72530 -14.63733 -14.48444 -14.10036 -13.63170 -13.46833 -13.25284 -13.03762 -12.87092 -12.71041 -12.48294 -12.28106 -12.14862 -11.96846 -11.86407 -11.66154 -11.33353 -11.17703 -9.61552 -9.48347 -9.17460 -8.80729 -6.49729 0.58836 0.95243 1.36509 1.46195 1.49745 1.51087 1.98725 2.12564 2.49199 3.24166 3.37394 3.38307 3.78373 3.92014 4.02266 4.28000 4.28625 4.39541 4.53760 4.69061 4.92246 4.96576 4.98372 5.07955 5.10327 5.18943 5.23428 5.30028 5.45283 5.53752 5.65763 5.79251 5.93180 6.08054 6.12571 6.22223 6.50284 6.71821 6.84240 8.09482 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.013464 B = 0.007047 C = 0.004982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.177863 B = 3972.193920 C = 5618.333260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.037 3.963 3 Si 0.982 3.018 4 H -0.256 1.256 5 H -0.265 1.265 6 H -0.257 1.257 7 C -0.440 4.440 8 H 0.087 0.913 9 C 0.116 3.884 10 C -0.201 4.201 11 C -0.054 4.054 12 C -0.337 4.337 13 C 0.523 3.477 14 F -0.192 7.192 15 F -0.190 7.190 16 F -0.189 7.189 17 C -0.031 4.031 18 C -0.187 4.187 19 C -0.067 4.067 20 C -0.184 4.184 21 C -0.086 4.086 22 C -0.114 4.114 23 C -0.090 4.090 24 H 0.298 0.702 25 H 0.114 0.886 26 H 0.108 0.892 27 H 0.114 0.886 28 H 0.100 0.900 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.068 0.932 32 H 0.094 0.906 33 H 0.057 0.943 34 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.732 -2.853 -1.684 6.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.183 4.183 3 Si 0.801 3.199 4 H -0.179 1.179 5 H -0.189 1.189 6 H -0.181 1.181 7 C -0.466 4.466 8 H 0.105 0.895 9 C 0.112 3.888 10 C -0.220 4.220 11 C -0.073 4.073 12 C -0.340 4.340 13 C 0.470 3.530 14 F -0.173 7.173 15 F -0.172 7.172 16 F -0.171 7.171 17 C -0.049 4.049 18 C -0.189 4.189 19 C -0.068 4.068 20 C -0.202 4.202 21 C -0.123 4.123 22 C -0.152 4.152 23 C -0.127 4.127 24 H 0.109 0.891 25 H 0.131 0.869 26 H 0.126 0.874 27 H 0.132 0.868 28 H 0.118 0.882 29 H 0.093 0.907 30 H 0.102 0.898 31 H 0.087 0.913 32 H 0.113 0.887 33 H 0.076 0.924 34 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 5.488 -2.738 -1.692 6.362 hybrid contribution -0.589 0.463 0.256 0.792 sum 4.899 -2.274 -1.436 5.589 Atomic orbital electron populations 1.69819 1.09278 1.31828 1.30650 1.26959 0.95467 1.04933 0.90916 0.85229 0.79002 0.75108 0.80518 1.17947 1.18890 1.18112 1.19855 0.98691 0.91546 1.36506 0.89474 1.19104 0.90325 0.91868 0.87460 1.20880 1.00841 0.96771 1.03480 1.20167 0.97876 0.91680 0.97540 1.18993 1.06287 0.91160 1.17535 1.18282 0.76420 0.84278 0.74058 1.93138 1.85337 1.89916 1.48940 1.93094 1.35356 1.93633 1.95116 1.93092 1.95761 1.66468 1.61766 1.20442 0.93020 0.97224 0.94256 1.19653 1.00704 0.92059 1.06460 1.20494 0.93634 0.98952 0.93672 1.23733 0.98676 1.02371 0.95446 1.21235 0.90959 1.02199 0.97914 1.22407 0.97090 1.01911 0.93758 1.21307 0.91515 1.00677 0.99217 0.89098 0.86862 0.87433 0.86822 0.88219 0.90672 0.89787 0.91308 0.88704 0.92381 0.90384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -37.81 10.97 21.85 0.24 -37.57 16 2 C 0.04 1.70 5.15 85.30 0.44 2.14 16 3 Si 0.98 34.39 29.60 68.60 2.03 36.42 16 4 H -0.26 -8.69 7.11 99.48 0.71 -7.98 16 5 H -0.26 -8.77 7.11 99.48 0.71 -8.06 16 6 H -0.26 -8.86 7.11 99.48 0.71 -8.15 16 7 C -0.44 -21.50 8.58 23.34 0.20 -21.30 16 8 H 0.09 4.15 7.38 -2.91 -0.02 4.13 16 9 C 0.12 5.87 5.74 -19.86 -0.11 5.76 16 10 C -0.20 -10.12 8.66 22.47 0.19 -9.93 16 11 C -0.05 -2.52 9.26 21.96 0.20 -2.32 16 12 C -0.34 -15.14 5.46 -19.81 -0.11 -15.25 16 13 C 0.52 20.94 3.34 71.23 0.24 21.18 16 14 F -0.19 -7.42 17.30 44.97 0.78 -6.64 16 15 F -0.19 -7.47 16.40 44.97 0.74 -6.73 16 16 F -0.19 -7.28 16.40 44.97 0.74 -6.54 16 17 C -0.03 -1.39 9.12 22.51 0.21 -1.19 16 18 C -0.19 -8.75 5.85 -18.46 -0.11 -8.85 16 19 C -0.07 -2.69 4.48 -18.57 -0.08 -2.77 16 20 C -0.18 -6.80 10.70 24.64 0.26 -6.54 16 21 C -0.09 -2.35 6.80 30.51 0.21 -2.15 16 22 C -0.11 -2.92 7.16 31.66 0.23 -2.69 16 23 C -0.09 -2.90 6.74 30.51 0.21 -2.69 16 24 H 0.30 12.71 8.29 -92.71 -0.77 11.95 16 25 H 0.11 5.84 6.18 -2.91 -0.02 5.82 16 26 H 0.11 4.62 7.53 -2.91 -0.02 4.60 16 27 H 0.11 4.64 7.55 -2.91 -0.02 4.61 16 28 H 0.10 3.99 8.06 -2.91 -0.02 3.96 16 29 H 0.07 1.87 8.14 -2.38 -0.02 1.85 16 30 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 32 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 34 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 Total: -1.00 -52.83 302.87 7.62 -45.21 By element: Atomic # 1 Polarization: 21.32 SS G_CDS: 1.13 Total: 22.45 kcal Atomic # 6 Polarization: -48.58 SS G_CDS: 1.97 Total: -46.61 kcal Atomic # 7 Polarization: -37.81 SS G_CDS: 0.24 Total: -37.57 kcal Atomic # 9 Polarization: -22.16 SS G_CDS: 2.25 Total: -19.91 kcal Atomic # 14 Polarization: 34.39 SS G_CDS: 2.03 Total: 36.42 kcal Total: -52.83 7.62 -45.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239789607.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.174 kcal (2) G-P(sol) polarization free energy of solvation -52.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds