Wall clock time and date at job start Tue Mar 31 2020 05:23:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30730 * 1 3 3 Si 1.86802 * 120.00144 * 2 1 4 4 H 1.48507 * 109.46960 * 269.99881 * 3 2 1 5 5 H 1.48498 * 109.47255 * 29.99820 * 3 2 1 6 6 H 1.48498 * 109.47222 * 149.99967 * 3 2 1 7 7 C 1.40050 * 119.99997 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00032 * 197.29074 * 7 2 1 9 9 C 1.41524 * 119.99867 * 17.29215 * 7 2 1 10 10 C 1.41164 * 120.98290 * 23.16995 * 9 7 2 11 11 C 1.37729 * 119.10033 * 180.02562 * 10 9 7 12 12 N 1.31915 * 121.16996 * 0.02562 * 11 10 9 13 13 C 1.32871 * 122.19826 * 359.97438 * 12 11 10 14 14 C 1.48116 * 119.63036 * 179.97438 * 13 12 11 15 15 C 1.38932 * 120.28859 * 179.97438 * 14 13 12 16 16 C 1.38680 * 120.20646 * 179.97438 * 15 14 13 17 17 F 1.35103 * 119.61168 * 180.02562 * 16 15 14 18 18 C 1.38105 * 120.77210 * 0.02562 * 16 15 14 19 19 C 1.39083 * 120.17220 * 359.97438 * 18 16 15 20 20 N 1.37759 * 133.33551 * 179.97438 * 19 18 16 21 21 H 0.97003 * 125.07829 * 0.03769 * 20 19 18 22 22 C 1.36813 * 109.84692 * 180.02562 * 20 19 18 23 23 C 1.34359 * 109.88359 * 0.02562 * 22 20 19 24 24 C 1.40589 * 119.53340 * 359.73155 * 19 18 16 25 25 C 1.39040 * 120.74611 * 359.97438 * 13 12 11 26 26 H 0.97004 * 119.99806 * 0.02562 * 1 2 3 27 27 H 1.08002 * 120.44805 * 0.04203 * 10 9 7 28 28 H 1.07996 * 119.41046 * 180.28373 * 11 10 9 29 29 H 1.08001 * 119.89997 * 0.02663 * 15 14 13 30 30 H 1.08001 * 119.91727 * 180.02562 * 18 16 15 31 31 H 1.07998 * 125.05503 * 180.02562 * 22 20 19 32 32 H 1.07995 * 126.49602 * 180.02562 * 23 22 20 33 33 H 1.07997 * 120.62761 * 179.97438 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 2.4889 2.0464 -1.4001 5 1 1.4388 2.6527 0.7000 6 1 3.5389 1.4402 0.7000 7 6 2.0075 -1.2129 0.0005 8 1 3.0510 -1.2339 0.2785 9 6 1.3479 -2.4109 -0.3632 10 6 0.1900 -2.3867 -1.1703 11 6 -0.4214 -3.5759 -1.5005 12 7 0.0560 -4.7300 -1.0759 13 6 1.1420 -4.8099 -0.3144 14 6 1.6282 -6.1362 0.1309 15 6 2.7624 -6.2356 0.9270 16 6 3.2159 -7.4783 1.3434 17 9 4.3199 -7.5610 2.1177 18 6 2.5521 -8.6322 0.9758 19 6 1.4141 -8.5605 0.1794 20 7 0.5603 -9.5102 -0.3372 21 1 0.6433 -10.4672 -0.2018 22 6 -0.4224 -8.9022 -1.0696 23 6 -0.2454 -7.5704 -1.0550 24 6 0.9420 -7.3055 -0.2433 25 6 1.8271 -3.6624 0.0692 26 1 -0.4850 0.8401 -0.0004 27 1 -0.2109 -1.4484 -1.5243 28 1 -1.3048 -3.5635 -2.1215 29 1 3.2923 -5.3424 1.2232 30 1 2.9170 -9.5928 1.3083 31 1 -1.2214 -9.4163 -1.5830 32 1 -0.8655 -6.8346 -1.5454 33 1 2.7093 -3.7295 0.6885 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240028632.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:16 Heat of formation + Delta-G solvation = 35.680606 kcal Electronic energy + Delta-G solvation = -20411.065900 eV Core-core repulsion = 17122.961437 eV Total energy + Delta-G solvation = -3288.104462 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.58014 -40.87265 -38.40088 -36.21245 -34.19239 -32.04789 -30.85755 -29.89593 -28.69411 -27.52417 -25.95165 -23.42956 -22.06486 -21.05220 -20.75184 -20.09109 -18.15932 -17.16438 -16.55336 -15.83800 -15.43901 -15.32123 -15.11644 -14.50777 -14.26150 -14.01372 -13.80038 -13.43308 -13.02466 -12.69572 -12.58297 -12.40998 -12.26415 -11.55252 -11.45786 -11.28923 -10.98231 -10.84260 -10.78456 -10.30949 -9.88424 -9.54088 -9.37852 -8.10816 -8.01335 -7.98036 -7.86502 -6.99178 -6.86692 -4.64103 1.07857 1.74609 2.71124 2.83692 3.00658 3.03991 3.04065 3.21522 3.26294 3.82334 4.16322 4.60909 4.66318 4.90952 5.12516 5.30334 5.53065 5.55561 5.64399 5.66315 5.92708 6.12191 6.23226 6.41133 6.49028 6.62527 6.74992 6.84476 6.93412 7.03629 7.09795 7.15317 7.28541 7.41795 7.44539 7.73297 7.80211 8.04342 8.39561 8.67266 8.69074 9.51379 10.01664 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.022951 B = 0.004580 C = 0.003857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.719401 B = 6112.718889 C = 7257.509814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.078 3.922 3 Si 0.913 3.087 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.260 1.260 7 C -0.455 4.455 8 H 0.083 0.917 9 C 0.124 3.876 10 C -0.206 4.206 11 C 0.085 3.915 12 N -0.550 5.550 13 C 0.147 3.853 14 C 0.072 3.928 15 C -0.182 4.182 16 C 0.123 3.877 17 F -0.143 7.143 18 C -0.186 4.186 19 C 0.115 3.885 20 N -0.600 5.600 21 H 0.411 0.589 22 C 0.013 3.987 23 C -0.149 4.149 24 C -0.096 4.096 25 C -0.244 4.244 26 H 0.284 0.716 27 H 0.127 0.873 28 H 0.123 0.877 29 H 0.141 0.859 30 H 0.125 0.875 31 H 0.166 0.834 32 H 0.163 0.837 33 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.473 -11.655 -0.717 11.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.142 4.142 3 Si 0.737 3.263 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.184 1.184 7 C -0.486 4.486 8 H 0.101 0.899 9 C 0.116 3.884 10 C -0.228 4.228 11 C -0.067 4.067 12 N -0.264 5.264 13 C 0.014 3.986 14 C 0.070 3.930 15 C -0.203 4.203 16 C 0.102 3.898 17 F -0.122 7.122 18 C -0.209 4.209 19 C 0.007 3.993 20 N -0.204 5.204 21 H 0.247 0.753 22 C -0.110 4.110 23 C -0.174 4.174 24 C -0.101 4.101 25 C -0.267 4.267 26 H 0.095 0.905 27 H 0.145 0.855 28 H 0.141 0.859 29 H 0.158 0.842 30 H 0.143 0.857 31 H 0.184 0.816 32 H 0.180 0.820 33 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -0.194 -12.385 -0.946 12.423 hybrid contribution 0.959 1.149 0.531 1.587 sum 0.764 -11.237 -0.416 11.270 Atomic orbital electron populations 1.69761 1.07753 1.29680 1.33739 1.25971 0.94762 1.01601 0.91843 0.86233 0.80522 0.80092 0.79493 1.19084 1.20149 1.18412 1.19625 0.98126 0.90806 1.40005 0.89920 1.17761 0.90867 0.91967 0.87806 1.22303 1.00054 0.98316 1.02173 1.21986 0.98177 0.88464 0.98119 1.67315 1.14030 1.28689 1.16399 1.18959 0.93132 0.90073 0.96476 1.18047 0.91334 0.91238 0.92368 1.20946 0.99442 0.96455 1.03465 1.16931 0.85052 0.93518 0.94264 1.91460 1.50759 1.97174 1.72797 1.19564 0.97629 0.97755 1.05923 1.17740 0.93405 0.89116 0.99072 1.41641 1.24544 1.07843 1.46369 0.75344 1.21872 0.94878 0.93728 1.00554 1.22106 0.98388 0.94053 1.02807 1.19145 0.98021 0.90712 1.02242 1.21933 1.04146 0.92838 1.07781 0.90503 0.85497 0.85906 0.84178 0.85718 0.81632 0.81952 0.87579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.34 10.90 55.55 0.61 -18.73 16 2 C 0.08 1.87 5.20 -17.34 -0.09 1.78 16 3 Si 0.91 17.86 29.59 -169.99 -5.03 12.83 16 4 H -0.27 -5.15 7.11 56.52 0.40 -4.74 16 5 H -0.28 -5.29 7.11 56.52 0.40 -4.89 16 6 H -0.26 -5.06 7.11 56.52 0.40 -4.65 16 7 C -0.45 -11.59 9.12 -37.65 -0.34 -11.93 16 8 H 0.08 2.02 7.90 -52.49 -0.41 1.61 16 9 C 0.12 3.21 5.61 -106.56 -0.60 2.61 16 10 C -0.21 -5.16 8.80 -38.66 -0.34 -5.50 16 11 C 0.09 1.97 11.15 -17.70 -0.20 1.77 16 12 N -0.55 -12.75 7.89 -9.97 -0.08 -12.82 16 13 C 0.15 3.42 6.73 -83.07 -0.56 2.86 16 14 C 0.07 1.47 5.90 -104.68 -0.62 0.85 16 15 C -0.18 -3.38 9.38 -39.16 -0.37 -3.75 16 16 C 0.12 2.04 7.27 -39.47 -0.29 1.76 16 17 F -0.14 -2.30 17.25 2.25 0.04 -2.26 16 18 C -0.19 -2.80 10.03 -39.32 -0.39 -3.19 16 19 C 0.11 1.80 7.27 -84.00 -0.61 1.19 16 20 N -0.60 -7.32 6.07 -10.64 -0.06 -7.38 16 21 H 0.41 3.42 8.96 -40.82 -0.37 3.06 16 22 C 0.01 0.17 11.82 -16.70 -0.20 -0.03 16 23 C -0.15 -2.50 10.17 -37.73 -0.38 -2.88 16 24 C -0.10 -1.79 6.14 -104.88 -0.64 -2.44 16 25 C -0.24 -5.90 9.25 -38.31 -0.35 -6.26 16 26 H 0.28 6.33 8.29 -40.82 -0.34 5.99 16 27 H 0.13 3.22 6.16 -52.49 -0.32 2.90 16 28 H 0.12 2.45 8.06 -52.49 -0.42 2.03 16 29 H 0.14 2.52 6.17 -52.49 -0.32 2.20 16 30 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 31 H 0.17 1.42 8.06 -52.49 -0.42 1.00 16 32 H 0.16 2.86 6.87 -52.49 -0.36 2.50 16 33 H 0.11 2.38 6.19 -52.49 -0.32 2.06 16 LS Contribution 291.57 15.07 4.39 4.39 Total: -1.00 -28.38 291.57 -8.63 -37.01 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -2.52 Total: 10.12 kcal Atomic # 6 Polarization: -17.18 SS G_CDS: -5.98 Total: -23.16 kcal Atomic # 7 Polarization: -39.40 SS G_CDS: 0.46 Total: -38.94 kcal Atomic # 9 Polarization: -2.30 SS G_CDS: 0.04 Total: -2.26 kcal Atomic # 14 Polarization: 17.86 SS G_CDS: -5.03 Total: 12.83 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -28.38 -8.63 -37.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240028632.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.695 kcal (2) G-P(sol) polarization free energy of solvation -28.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds