Wall clock time and date at job start Tue Mar 31 2020 05:19:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30752 * 1 3 3 Si 1.86802 * 120.00149 * 2 1 4 4 H 1.48497 * 109.47266 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46576 * 300.00006 * 3 2 1 6 6 H 1.48503 * 109.47224 * 59.99761 * 3 2 1 7 7 C 1.40046 * 120.00119 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00012 * 180.02562 * 7 2 1 9 9 C 1.40831 * 119.99667 * 359.97438 * 7 2 1 10 10 C 1.40965 * 119.66099 * 180.02562 * 9 7 2 11 11 C 1.36526 * 119.27794 * 179.97438 * 10 9 7 12 12 C 1.40505 * 118.59393 * 0.02562 * 11 10 9 13 13 C 1.47529 * 120.35790 * 180.02562 * 12 11 10 14 14 C 1.39382 * 120.32748 * 309.71845 * 13 12 11 15 15 C 1.38444 * 120.17026 * 179.72732 * 14 13 12 16 16 F 1.35107 * 119.59026 * 180.29912 * 15 14 13 17 17 C 1.38340 * 120.82050 * 0.57878 * 15 14 13 18 18 C 1.39055 * 120.24667 * 359.70064 * 17 15 14 19 19 N 1.37785 * 133.30707 * 180.02562 * 18 17 15 20 20 H 0.96998 * 125.07596 * 359.94359 * 19 18 17 21 21 C 1.36655 * 109.84415 * 179.97438 * 19 18 17 22 22 C 1.34588 * 109.86026 * 359.97438 * 21 19 18 23 23 C 1.40592 * 119.55101 * 0.02562 * 18 17 15 24 24 C 1.40285 * 119.27843 * 359.97438 * 12 11 10 25 25 N 1.31128 * 120.65885 * 359.97438 * 24 12 11 26 26 H 0.96999 * 119.99937 * 359.97438 * 1 2 3 27 27 H 1.08007 * 120.36221 * 0.02562 * 10 9 7 28 28 H 1.07998 * 120.70352 * 180.27640 * 11 10 9 29 29 H 1.07998 * 119.91316 * 0.02562 * 14 13 12 30 30 H 1.07998 * 119.87814 * 179.68005 * 17 15 14 31 31 H 1.08005 * 125.06930 * 179.97438 * 21 19 18 32 32 H 1.08004 * 126.49921 * 179.97438 * 22 21 19 33 33 H 1.07994 * 119.66704 * 180.02562 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2416 1.6177 0.0000 4 1 3.7015 1.3464 0.0006 5 1 1.8827 2.3964 -1.2126 6 1 1.8828 2.3965 1.2125 7 6 2.0078 -1.2128 0.0005 8 1 3.0878 -1.2128 0.0010 9 6 1.3036 -2.4324 0.0016 10 6 2.0156 -3.6491 0.0027 11 6 1.3250 -4.8268 0.0043 12 6 -0.0794 -4.7829 0.0042 13 6 -0.8644 -6.0319 0.0065 14 6 -0.5880 -7.0386 -0.9171 15 6 -1.3230 -8.2117 -0.9084 16 9 -1.0412 -9.1823 -1.8051 17 6 -2.3463 -8.4003 0.0032 18 6 -2.6479 -7.4107 0.9324 19 7 -3.5842 -7.3126 1.9384 20 1 -4.2355 -7.9956 2.1622 21 6 -3.4587 -6.1089 2.5731 22 6 -2.4599 -5.3999 2.0155 23 6 -1.9060 -6.2165 0.9389 24 6 -0.7269 -3.5384 0.0031 25 7 -0.0348 -2.4246 0.0026 26 1 -0.4850 0.8400 0.0004 27 1 3.0956 -3.6495 0.0031 28 1 1.8471 -5.7722 0.0096 29 1 0.2047 -6.9050 -1.6382 30 1 -2.9134 -9.3194 -0.0069 31 1 -4.0700 -5.7762 3.3991 32 1 -2.1313 -4.4134 2.3079 33 1 -1.8060 -3.4973 0.0035 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240033270.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:26 Heat of formation + Delta-G solvation = 40.313352 kcal Electronic energy + Delta-G solvation = -20373.019189 eV Core-core repulsion = 17085.115618 eV Total energy + Delta-G solvation = -3287.903571 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.55950 -40.86371 -38.26239 -36.18817 -33.83908 -32.07801 -30.74771 -29.91449 -28.86307 -27.93310 -25.61331 -22.79687 -22.10993 -21.11930 -20.95707 -20.05519 -17.76051 -17.59062 -16.74592 -15.79088 -15.63437 -15.28337 -14.95158 -14.37475 -14.26645 -13.95682 -13.86663 -13.50268 -13.11939 -12.64663 -12.40879 -12.13035 -12.03130 -11.53343 -11.39448 -11.24607 -11.07498 -10.88143 -10.74152 -10.36651 -9.98941 -9.58396 -9.28969 -8.34139 -7.93732 -7.82298 -7.65018 -7.07635 -6.53694 -4.62617 1.25496 1.82592 2.64916 2.96249 3.01993 3.04978 3.06289 3.10978 3.25965 3.83522 4.16087 4.61215 4.73816 5.05833 5.10166 5.44481 5.55956 5.60450 5.74884 5.84734 6.03814 6.07696 6.14074 6.34720 6.45676 6.57957 6.66598 6.73050 6.87163 6.97773 6.99385 7.11213 7.32034 7.41391 7.55020 7.69017 7.72890 7.93835 8.10022 8.50503 8.80063 9.99821 10.15764 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.025407 B = 0.004294 C = 0.003816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.809828 B = 6518.810637 C = 7336.494786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.701 5.701 2 C 0.064 3.936 3 Si 0.910 3.090 4 H -0.259 1.259 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.411 4.411 8 H 0.087 0.913 9 C 0.253 3.747 10 C -0.273 4.273 11 C -0.031 4.031 12 C -0.282 4.282 13 C 0.109 3.891 14 C -0.204 4.204 15 C 0.130 3.870 16 F -0.147 7.147 17 C -0.207 4.207 18 C 0.124 3.876 19 N -0.598 5.598 20 H 0.411 0.589 21 C 0.024 3.976 22 C -0.172 4.172 23 C -0.123 4.123 24 C 0.165 3.835 25 N -0.489 5.489 26 H 0.276 0.724 27 H 0.100 0.900 28 H 0.097 0.903 29 H 0.130 0.870 30 H 0.121 0.879 31 H 0.167 0.833 32 H 0.148 0.852 33 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.694 -8.896 3.216 11.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.321 5.321 2 C -0.163 4.163 3 Si 0.734 3.266 4 H -0.182 1.182 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.441 4.441 8 H 0.105 0.895 9 C 0.130 3.870 10 C -0.295 4.295 11 C -0.054 4.054 12 C -0.287 4.287 13 C 0.107 3.893 14 C -0.225 4.225 15 C 0.110 3.890 16 F -0.125 7.125 17 C -0.230 4.230 18 C 0.017 3.983 19 N -0.202 5.202 20 H 0.247 0.753 21 C -0.101 4.101 22 C -0.197 4.197 23 C -0.127 4.127 24 C -0.004 4.004 25 N -0.200 5.200 26 H 0.087 0.913 27 H 0.118 0.882 28 H 0.115 0.885 29 H 0.148 0.852 30 H 0.139 0.861 31 H 0.184 0.816 32 H 0.166 0.834 33 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -6.326 -7.963 3.249 10.676 hybrid contribution 0.483 -0.736 -0.024 0.881 sum -5.843 -8.699 3.225 10.964 Atomic orbital electron populations 1.70150 1.07315 1.28134 1.26499 1.26172 0.94988 1.01410 0.93687 0.86225 0.80873 0.80794 0.78756 1.18232 1.19632 1.19638 1.19752 0.94647 0.89607 1.40125 0.89470 1.18661 0.88568 0.91919 0.87815 1.21386 0.98844 0.93526 1.15778 1.20600 0.92620 0.96782 0.95422 1.18929 0.92998 0.92008 1.24791 1.18112 0.90232 0.92039 0.88921 1.20975 1.04403 0.93593 1.03490 1.17060 0.96469 0.86278 0.89172 1.91446 1.93043 1.61964 1.66095 1.19475 1.03263 1.00276 0.99951 1.17708 0.92512 0.96095 0.92026 1.41631 1.31543 1.17274 1.29720 0.75304 1.21769 1.01730 0.86212 1.00345 1.21807 0.98793 1.00768 0.98290 1.19303 0.99405 0.94536 0.99503 1.22739 0.98539 0.87427 0.91695 1.68816 1.07003 1.26113 1.18079 0.91306 0.88159 0.88500 0.85177 0.86070 0.81557 0.83420 0.86117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -17.89 11.44 55.55 0.64 -17.25 16 2 C 0.06 1.57 5.50 -17.33 -0.10 1.47 16 3 Si 0.91 17.70 29.56 -169.99 -5.02 12.67 16 4 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 5 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 6 H -0.27 -5.20 7.11 56.52 0.40 -4.79 16 7 C -0.41 -10.55 9.11 -37.92 -0.35 -10.89 16 8 H 0.09 2.08 7.85 -52.49 -0.41 1.67 16 9 C 0.25 6.70 6.55 -84.98 -0.56 6.14 16 10 C -0.27 -6.50 9.76 -39.17 -0.38 -6.88 16 11 C -0.03 -0.68 9.61 -39.35 -0.38 -1.06 16 12 C -0.28 -6.21 5.46 -104.49 -0.57 -6.79 16 13 C 0.11 2.13 5.51 -104.64 -0.58 1.55 16 14 C -0.20 -3.71 9.51 -39.08 -0.37 -4.08 16 15 C 0.13 2.17 7.27 -39.47 -0.29 1.88 16 16 F -0.15 -2.36 17.25 2.25 0.04 -2.33 16 17 C -0.21 -3.14 10.03 -39.24 -0.39 -3.53 16 18 C 0.12 1.94 7.26 -84.00 -0.61 1.33 16 19 N -0.60 -7.23 6.07 -10.63 -0.06 -7.30 16 20 H 0.41 3.43 8.96 -40.82 -0.37 3.07 16 21 C 0.02 0.30 11.83 -16.69 -0.20 0.10 16 22 C -0.17 -2.78 10.30 -37.75 -0.39 -3.17 16 23 C -0.12 -2.21 6.04 -104.83 -0.63 -2.85 16 24 C 0.16 3.91 10.07 -17.08 -0.17 3.74 16 25 N -0.49 -13.03 7.82 -10.81 -0.08 -13.11 16 26 H 0.28 6.31 8.29 -40.82 -0.34 5.97 16 27 H 0.10 2.20 8.06 -52.48 -0.42 1.77 16 28 H 0.10 1.90 8.06 -52.49 -0.42 1.48 16 29 H 0.13 2.29 8.05 -52.49 -0.42 1.87 16 30 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 31 H 0.17 1.42 8.06 -52.48 -0.42 1.00 16 32 H 0.15 2.47 7.85 -52.48 -0.41 2.06 16 33 H 0.12 2.68 7.87 -52.49 -0.41 2.26 16 LS Contribution 298.35 15.07 4.50 4.50 Total: -1.00 -28.94 298.35 -8.81 -37.75 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -2.85 Total: 8.11 kcal Atomic # 6 Polarization: -17.08 SS G_CDS: -5.96 Total: -23.04 kcal Atomic # 7 Polarization: -38.15 SS G_CDS: 0.49 Total: -37.66 kcal Atomic # 9 Polarization: -2.36 SS G_CDS: 0.04 Total: -2.33 kcal Atomic # 14 Polarization: 17.70 SS G_CDS: -5.02 Total: 12.67 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -28.94 -8.81 -37.75 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240033270.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.061 kcal (2) G-P(sol) polarization free energy of solvation -28.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds