Wall clock time and date at job start Tue Mar 31 2020 05:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30724 * 1 3 3 Si 1.86801 * 120.00384 * 2 1 4 4 H 1.48503 * 109.47177 * 270.00428 * 3 2 1 5 5 H 1.48496 * 109.47017 * 30.00113 * 3 2 1 6 6 H 1.48491 * 109.47469 * 150.00520 * 3 2 1 7 7 C 1.40095 * 119.99820 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00170 * 180.02562 * 7 2 1 9 9 C 1.40630 * 120.00244 * 359.97438 * 7 2 1 10 10 N 1.33758 * 119.95929 * 0.27112 * 9 7 2 11 11 C 1.31249 * 121.64682 * 180.26351 * 10 9 7 12 12 C 1.39135 * 121.38858 * 359.72644 * 11 10 9 13 13 C 1.38233 * 119.76422 * 359.97438 * 12 11 10 14 14 C 1.39939 * 118.46538 * 359.97438 * 13 12 11 15 15 C 1.47357 * 120.67090 * 179.97438 * 14 13 12 16 16 C 1.39463 * 120.33204 * 64.95512 * 15 14 13 17 17 C 1.38411 * 120.16161 * 180.02562 * 16 15 14 18 18 F 1.35095 * 119.58626 * 180.02562 * 17 16 15 19 19 C 1.38373 * 120.82785 * 0.02562 * 17 16 15 20 20 C 1.39048 * 120.26525 * 0.02562 * 19 17 16 21 21 N 1.37778 * 133.30428 * 179.97438 * 20 19 17 22 22 H 0.97004 * 125.08214 * 0.02562 * 21 20 19 23 23 C 1.36643 * 109.84601 * 179.76110 * 21 20 19 24 24 C 1.34614 * 109.85524 * 0.44798 * 23 21 20 25 25 C 1.40586 * 119.55342 * 359.97438 * 20 19 17 26 26 H 0.97010 * 119.99828 * 0.02562 * 1 2 3 27 27 H 1.07992 * 119.30527 * 179.74569 * 11 10 9 28 28 H 1.07999 * 120.11812 * 180.02562 * 12 11 10 29 29 H 1.08001 * 120.76574 * 179.97438 * 13 12 11 30 30 H 1.07996 * 119.92084 * 0.02562 * 16 15 14 31 31 H 1.08002 * 119.86281 * 179.97438 * 19 17 16 32 32 H 1.08002 * 125.07685 * 180.27347 * 23 21 20 33 33 H 1.08002 * 126.50660 * 179.83658 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3072 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.4888 2.0464 -1.4001 5 1 1.4389 2.6526 0.7000 6 1 3.5389 1.4401 0.6999 7 6 2.0077 -1.2133 -0.0005 8 1 3.0877 -1.2133 -0.0001 9 6 1.3045 -2.4312 -0.0005 10 7 -0.0330 -2.4302 -0.0055 11 6 -0.7225 -3.5471 -0.0005 12 6 -0.0925 -4.7876 0.0045 13 6 1.2882 -4.8561 0.0038 14 6 2.0153 -3.6605 -0.0026 15 6 3.4888 -3.6768 -0.0031 16 6 4.1870 -4.1997 -1.0913 17 6 5.5710 -4.2138 -1.0878 18 9 6.2355 -4.7226 -2.1483 19 6 6.2825 -3.7132 -0.0118 20 6 5.6129 -3.1867 1.0872 21 7 6.0365 -2.6308 2.2746 22 1 6.9633 -2.5168 2.5376 23 6 4.9563 -2.2587 3.0241 24 6 3.8196 -2.5618 2.3698 25 6 4.2073 -3.1656 1.0980 26 1 -0.4850 0.8401 -0.0004 27 1 -1.8014 -3.5022 -0.0007 28 1 -0.6800 -5.6938 0.0081 29 1 1.7940 -5.8103 0.0080 30 1 3.6464 -4.5947 -1.9387 31 1 7.3623 -3.7323 -0.0253 32 1 5.0068 -1.7937 3.9976 33 1 2.8121 -2.3868 2.7171 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240035569.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:29 Heat of formation + Delta-G solvation = 44.744393 kcal Electronic energy + Delta-G solvation = -21186.202413 eV Core-core repulsion = 17898.490986 eV Total energy + Delta-G solvation = -3287.711427 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.43776 -40.70138 -38.19492 -35.97386 -33.70530 -32.26122 -30.44511 -29.75802 -28.73900 -27.53983 -25.64381 -23.15137 -21.60062 -21.10661 -20.87498 -19.80881 -17.62163 -17.47969 -16.60077 -15.61700 -15.59507 -15.13548 -14.86595 -14.47478 -14.17752 -13.82646 -13.75177 -13.34816 -12.96809 -12.66866 -12.25895 -11.99438 -11.91478 -11.35010 -11.25859 -11.21936 -11.07296 -10.77913 -10.61233 -10.34592 -9.90185 -9.44334 -9.05048 -8.21589 -7.76359 -7.67743 -7.60687 -6.99984 -6.46957 -4.55528 1.44729 2.00464 2.69025 2.94992 3.05550 3.09859 3.17901 3.20702 3.43154 3.90631 4.31936 4.69930 4.85246 5.19797 5.28609 5.56870 5.71635 5.74804 5.89726 5.92211 6.08760 6.14174 6.30514 6.49238 6.57215 6.62429 6.74634 6.81960 7.02666 7.06963 7.16192 7.24684 7.37291 7.53598 7.61789 7.73311 7.89331 8.00930 8.23677 8.58536 8.89159 10.04140 10.22546 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.012865 B = 0.008052 C = 0.006347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.855743 B = 3476.739722 C = 4410.278707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.708 5.708 2 C 0.069 3.931 3 Si 0.901 3.099 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.259 1.259 7 C -0.406 4.406 8 H 0.089 0.911 9 C 0.273 3.727 10 N -0.482 5.482 11 C 0.134 3.866 12 C -0.323 4.323 13 C -0.028 4.028 14 C -0.244 4.244 15 C 0.115 3.885 16 C -0.197 4.197 17 C 0.124 3.876 18 F -0.148 7.148 19 C -0.200 4.200 20 C 0.118 3.882 21 N -0.599 5.599 22 H 0.409 0.591 23 C 0.017 3.983 24 C -0.153 4.153 25 C -0.105 4.105 26 H 0.274 0.726 27 H 0.118 0.882 28 H 0.095 0.905 29 H 0.096 0.904 30 H 0.129 0.871 31 H 0.121 0.879 32 H 0.165 0.835 33 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.464 -2.437 3.905 9.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.328 5.328 2 C -0.157 4.157 3 Si 0.725 3.275 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.183 1.183 7 C -0.436 4.436 8 H 0.107 0.893 9 C 0.150 3.850 10 N -0.193 5.193 11 C -0.035 4.035 12 C -0.346 4.346 13 C -0.053 4.053 14 C -0.249 4.249 15 C 0.114 3.886 16 C -0.218 4.218 17 C 0.104 3.896 18 F -0.127 7.127 19 C -0.223 4.223 20 C 0.010 3.990 21 N -0.203 5.203 22 H 0.245 0.755 23 C -0.107 4.107 24 C -0.177 4.177 25 C -0.110 4.110 26 H 0.085 0.915 27 H 0.136 0.864 28 H 0.113 0.887 29 H 0.114 0.886 30 H 0.147 0.853 31 H 0.139 0.861 32 H 0.182 0.818 33 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 7.993 -1.413 3.945 9.025 hybrid contribution 1.332 -0.132 -0.091 1.342 sum 9.326 -1.545 3.854 10.208 Atomic orbital electron populations 1.70134 1.07225 1.27983 1.27456 1.26119 0.94828 1.01186 0.93574 0.86398 0.80732 0.80862 0.79474 1.19297 1.20016 1.18291 1.19626 0.94754 0.89133 1.40083 0.89283 1.18471 0.87776 0.90644 0.88075 1.68790 1.07020 1.26487 1.17044 1.22612 0.98791 0.88875 0.93235 1.21168 0.94515 0.97844 1.21085 1.20862 0.93729 0.95542 0.95118 1.19212 0.90092 0.94695 1.20902 1.17957 0.92597 0.88925 0.89140 1.20995 0.91272 1.08676 1.00810 1.17026 0.89803 0.98643 0.84131 1.91432 1.81179 1.85106 1.54951 1.19487 0.98937 1.10180 0.93655 1.17715 0.93496 0.99823 0.87921 1.41572 1.08241 1.55091 1.15393 0.75473 1.21742 0.85896 1.05053 0.98020 1.21755 0.97998 1.04196 0.93786 1.19274 0.90768 1.04865 0.96061 0.91470 0.86433 0.88706 0.88559 0.85306 0.86147 0.81765 0.83535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -18.21 11.45 55.55 0.64 -17.57 16 2 C 0.07 1.72 5.50 -17.33 -0.10 1.62 16 3 Si 0.90 18.46 29.56 -169.99 -5.02 13.43 16 4 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 5 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 6 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 7 C -0.41 -10.46 8.07 -37.98 -0.31 -10.77 16 8 H 0.09 2.27 5.96 -52.49 -0.31 1.96 16 9 C 0.27 7.15 6.57 -84.69 -0.56 6.59 16 10 N -0.48 -12.85 7.85 -10.89 -0.09 -12.94 16 11 C 0.13 3.15 11.17 -17.47 -0.20 2.96 16 12 C -0.32 -7.06 10.10 -39.25 -0.40 -7.46 16 13 C -0.03 -0.63 9.89 -38.95 -0.38 -1.01 16 14 C -0.24 -5.78 5.30 -104.11 -0.55 -6.33 16 15 C 0.12 2.48 4.49 -104.66 -0.47 2.01 16 16 C -0.20 -3.92 9.71 -39.06 -0.38 -4.29 16 17 C 0.12 2.25 7.27 -39.47 -0.29 1.96 16 18 F -0.15 -2.56 17.25 2.25 0.04 -2.52 16 19 C -0.20 -3.34 10.03 -39.23 -0.39 -3.73 16 20 C 0.12 2.05 7.26 -84.01 -0.61 1.44 16 21 N -0.60 -8.33 6.07 -10.63 -0.06 -8.39 16 22 H 0.41 4.08 8.96 -40.82 -0.37 3.72 16 23 C 0.02 0.24 11.83 -16.69 -0.20 0.05 16 24 C -0.15 -2.83 10.35 -37.75 -0.39 -3.22 16 25 C -0.10 -2.11 4.87 -104.82 -0.51 -2.62 16 26 H 0.27 6.40 8.29 -40.82 -0.34 6.06 16 27 H 0.12 2.45 8.06 -52.49 -0.42 2.03 16 28 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 29 H 0.10 1.90 8.06 -52.49 -0.42 1.48 16 30 H 0.13 2.47 8.06 -52.49 -0.42 2.05 16 31 H 0.12 1.66 8.06 -52.49 -0.42 1.24 16 32 H 0.17 1.73 8.06 -52.49 -0.42 1.31 16 33 H 0.15 2.88 8.06 -52.49 -0.42 2.46 16 LS Contribution 295.52 15.07 4.45 4.45 Total: -1.00 -29.12 295.52 -8.54 -37.67 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -2.77 Total: 8.67 kcal Atomic # 6 Polarization: -17.07 SS G_CDS: -5.72 Total: -22.80 kcal Atomic # 7 Polarization: -39.39 SS G_CDS: 0.49 Total: -38.90 kcal Atomic # 9 Polarization: -2.56 SS G_CDS: 0.04 Total: -2.52 kcal Atomic # 14 Polarization: 18.46 SS G_CDS: -5.02 Total: 13.43 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -29.12 -8.54 -37.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240035569.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.411 kcal (2) G-P(sol) polarization free energy of solvation -29.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds