Wall clock time and date at job start Tue Mar 31 2020 05:23:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30717 * 1 3 3 Si 1.86806 * 119.99569 * 2 1 4 4 H 1.48497 * 109.46969 * 275.37408 * 3 2 1 5 5 H 1.48493 * 109.47215 * 35.38018 * 3 2 1 6 6 H 1.48507 * 109.46590 * 155.37777 * 3 2 1 7 7 C 1.40125 * 120.00145 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99651 * 341.54108 * 7 2 1 9 9 C 1.40751 * 119.99871 * 161.53841 * 7 2 1 10 10 C 1.41177 * 121.12155 * 330.83829 * 9 7 2 11 11 C 1.36366 * 119.12871 * 180.02562 * 10 9 7 12 12 N 1.32309 * 121.57033 * 0.02562 * 11 10 9 13 13 C 1.31573 * 122.52960 * 359.67971 * 12 11 10 14 14 C 1.39568 * 120.62827 * 0.58678 * 13 12 11 15 15 C 1.47397 * 120.81077 * 179.73227 * 14 13 12 16 16 C 1.39438 * 120.32862 * 64.73191 * 15 14 13 17 17 C 1.38436 * 120.16102 * 180.02562 * 16 15 14 18 18 F 1.35101 * 119.58389 * 180.02562 * 17 16 15 19 19 C 1.38350 * 120.82531 * 359.97438 * 17 16 15 20 20 C 1.39054 * 120.26443 * 0.02562 * 19 17 16 21 21 N 1.37776 * 133.31297 * 179.97438 * 20 19 17 22 22 H 0.97010 * 125.07431 * 0.03181 * 21 20 19 23 23 C 1.36651 * 109.84930 * 179.73472 * 21 20 19 24 24 C 1.34599 * 109.85563 * 0.44605 * 23 21 20 25 25 C 1.40587 * 119.54688 * 359.97438 * 20 19 17 26 26 H 0.97002 * 120.00472 * 359.97438 * 1 2 3 27 27 H 1.08005 * 120.43830 * 0.02562 * 10 9 7 28 28 H 1.08004 * 119.21787 * 180.02562 * 11 10 9 29 29 H 1.08001 * 119.68624 * 180.29871 * 13 12 11 30 30 H 1.07998 * 119.92153 * 359.97438 * 16 15 14 31 31 H 1.08000 * 119.86974 * 179.97438 * 19 17 16 32 32 H 1.08007 * 125.07225 * 180.27673 * 23 21 20 33 33 H 1.08000 * 126.50018 * 179.83111 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3072 0.0000 0.0000 3 14 2.2411 1.6179 0.0000 4 1 2.3750 2.1121 -1.3939 5 1 1.5000 2.6172 0.8106 6 1 3.5909 1.4101 0.5834 7 6 2.0078 -1.2135 -0.0005 8 1 1.5095 -2.1248 0.2952 9 6 3.3610 -1.2446 -0.3866 10 6 3.8775 -0.3119 -1.3120 11 6 5.1948 -0.3796 -1.6577 12 7 5.9987 -1.2981 -1.1470 13 6 5.5863 -2.1940 -0.2761 14 6 4.2551 -2.2185 0.1426 15 6 3.7874 -3.2240 1.1135 16 6 4.2820 -3.2272 2.4173 17 6 3.8408 -4.1736 3.3262 18 9 4.3274 -4.1656 4.5865 19 6 2.9070 -5.1266 2.9604 20 6 2.3965 -5.1474 1.6672 21 7 1.4812 -5.9526 1.0252 22 1 1.0139 -6.6993 1.4317 23 6 1.3249 -5.5383 -0.2675 24 6 2.1218 -4.4805 -0.5081 25 6 2.8352 -4.1926 0.7332 26 1 -0.4851 0.8400 0.0004 27 1 3.2376 0.4454 -1.7405 28 1 5.5915 0.3335 -2.3652 29 1 6.2834 -2.9202 0.1150 30 1 5.0117 -2.4902 2.7184 31 1 2.5739 -5.8579 3.6820 32 1 0.6630 -5.9935 -0.9895 33 1 2.2129 -3.9438 -1.4408 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240037331.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:22 Heat of formation + Delta-G solvation = 35.626345 kcal Electronic energy + Delta-G solvation = -21188.478165 eV Core-core repulsion = 17900.371350 eV Total energy + Delta-G solvation = -3288.106815 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -48.44865 -40.73972 -38.61423 -36.05909 -34.15192 -32.36770 -31.10765 -29.92687 -28.71489 -27.59742 -25.89422 -23.25283 -21.87175 -21.25352 -20.88518 -19.88311 -17.77476 -17.67482 -16.67193 -15.78415 -15.62755 -15.22000 -15.03741 -14.59282 -14.29559 -14.09578 -13.79035 -13.45192 -13.11157 -12.94100 -12.65352 -12.52171 -12.17789 -11.61648 -11.38633 -11.22124 -11.00344 -10.80048 -10.66827 -10.50885 -9.83384 -9.45630 -9.18883 -8.27673 -8.10961 -7.90355 -7.74224 -7.15201 -7.05339 -4.75866 1.39757 1.96477 2.41382 2.59497 3.01861 3.11829 3.15050 3.22942 3.41399 3.84006 4.26409 4.47977 4.81754 5.15339 5.25643 5.30245 5.51730 5.60581 5.70523 5.76924 5.87165 6.02194 6.24570 6.41127 6.42874 6.52667 6.57863 6.68020 6.88975 6.96514 7.04861 7.11511 7.18006 7.31238 7.52486 7.64777 7.87113 7.89569 8.20112 8.41965 8.59342 9.35248 9.83741 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.014718 B = 0.007212 C = 0.006597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.008491 B = 3881.388797 C = 4243.103236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.087 3.913 3 Si 0.910 3.090 4 H -0.267 1.267 5 H -0.288 1.288 6 H -0.244 1.244 7 C -0.420 4.420 8 H 0.108 0.892 9 C 0.126 3.874 10 C -0.283 4.283 11 C 0.115 3.885 12 N -0.581 5.581 13 C 0.143 3.857 14 C -0.227 4.227 15 C 0.109 3.891 16 C -0.191 4.191 17 C 0.124 3.876 18 F -0.147 7.147 19 C -0.195 4.195 20 C 0.120 3.880 21 N -0.598 5.598 22 H 0.410 0.590 23 C 0.024 3.976 24 C -0.160 4.160 25 C -0.103 4.103 26 H 0.289 0.711 27 H 0.108 0.892 28 H 0.123 0.877 29 H 0.128 0.872 30 H 0.131 0.869 31 H 0.122 0.878 32 H 0.166 0.834 33 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.420 -7.339 1.719 7.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.136 4.136 3 Si 0.736 3.264 4 H -0.192 1.192 5 H -0.215 1.215 6 H -0.167 1.167 7 C -0.449 4.449 8 H 0.126 0.874 9 C 0.118 3.882 10 C -0.306 4.306 11 C -0.034 4.034 12 N -0.295 5.295 13 C -0.013 4.013 14 C -0.232 4.232 15 C 0.107 3.893 16 C -0.211 4.211 17 C 0.103 3.897 18 F -0.126 7.126 19 C -0.217 4.217 20 C 0.012 3.988 21 N -0.202 5.202 22 H 0.246 0.754 23 C -0.100 4.100 24 C -0.185 4.185 25 C -0.108 4.108 26 H 0.100 0.900 27 H 0.126 0.874 28 H 0.140 0.860 29 H 0.145 0.855 30 H 0.148 0.852 31 H 0.140 0.860 32 H 0.183 0.817 33 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 0.957 -7.332 1.487 7.542 hybrid contribution -1.099 0.494 0.679 1.383 sum -0.142 -6.838 2.165 7.174 Atomic orbital electron populations 1.69636 1.08286 1.30792 1.32026 1.26299 0.94737 1.02024 0.90519 0.86319 0.81456 0.79510 0.79099 1.19246 1.21502 1.16701 1.19649 0.92839 0.96691 1.35682 0.87433 1.17751 0.92479 0.89490 0.88437 1.21599 0.97318 1.05893 1.05770 1.21650 0.90513 0.94839 0.96432 1.67411 1.38359 1.07763 1.15978 1.22224 0.92005 0.94554 0.92485 1.19370 0.94565 1.03505 1.05779 1.17818 0.90136 0.90137 0.91183 1.20950 1.05998 1.01263 0.92890 1.16993 0.96333 0.97118 0.79216 1.91439 1.86783 1.96226 1.38130 1.19515 1.03863 1.03566 0.94782 1.17695 0.94180 0.93721 0.93202 1.41584 1.38352 1.29643 1.10615 0.75382 1.21745 1.03183 0.99372 0.85707 1.21728 0.99929 0.98636 0.98200 1.19245 1.00688 0.96833 0.93999 0.90012 0.87428 0.85984 0.85496 0.85154 0.86039 0.81675 0.83617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.60 13.92 55.56 0.77 -18.82 16 2 C 0.09 2.15 5.42 -17.32 -0.09 2.05 16 3 Si 0.91 19.84 24.54 -169.99 -4.17 15.67 16 4 H -0.27 -5.57 6.70 56.52 0.38 -5.19 16 5 H -0.29 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.24 -5.57 6.86 56.52 0.39 -5.18 16 7 C -0.42 -10.60 8.84 -37.92 -0.34 -10.93 16 8 H 0.11 2.87 5.68 -52.49 -0.30 2.57 16 9 C 0.13 3.04 5.15 -106.23 -0.55 2.50 16 10 C -0.28 -6.55 7.23 -39.14 -0.28 -6.83 16 11 C 0.12 2.51 11.08 -18.02 -0.20 2.31 16 12 N -0.58 -13.01 10.31 -13.33 -0.14 -13.14 16 13 C 0.14 3.09 10.93 -17.17 -0.19 2.90 16 14 C -0.23 -5.10 5.30 -104.07 -0.55 -5.66 16 15 C 0.11 2.27 4.77 -104.66 -0.50 1.77 16 16 C -0.19 -3.69 9.71 -39.06 -0.38 -4.07 16 17 C 0.12 2.21 7.27 -39.47 -0.29 1.92 16 18 F -0.15 -2.51 17.25 2.25 0.04 -2.47 16 19 C -0.20 -3.23 10.03 -39.24 -0.39 -3.62 16 20 C 0.12 2.07 7.26 -84.00 -0.61 1.46 16 21 N -0.60 -8.32 6.07 -10.63 -0.06 -8.39 16 22 H 0.41 4.11 8.96 -40.82 -0.37 3.75 16 23 C 0.02 0.35 11.83 -16.69 -0.20 0.15 16 24 C -0.16 -2.93 9.87 -37.75 -0.37 -3.31 16 25 C -0.10 -2.04 5.00 -104.82 -0.52 -2.56 16 26 H 0.29 6.53 8.29 -40.82 -0.34 6.19 16 27 H 0.11 2.43 4.76 -52.48 -0.25 2.18 16 28 H 0.12 2.29 8.06 -52.48 -0.42 1.87 16 29 H 0.13 2.43 8.06 -52.49 -0.42 2.00 16 30 H 0.13 2.40 8.06 -52.49 -0.42 1.98 16 31 H 0.12 1.66 8.06 -52.49 -0.42 1.24 16 32 H 0.17 1.75 8.06 -52.48 -0.42 1.32 16 33 H 0.15 2.78 8.06 -52.49 -0.42 2.35 16 LS Contribution 288.52 15.07 4.35 4.35 Total: -1.00 -28.02 288.52 -7.30 -35.32 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -2.62 Total: 9.39 kcal Atomic # 6 Polarization: -16.44 SS G_CDS: -5.46 Total: -21.90 kcal Atomic # 7 Polarization: -40.93 SS G_CDS: 0.57 Total: -40.36 kcal Atomic # 9 Polarization: -2.51 SS G_CDS: 0.04 Total: -2.47 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -4.17 Total: 15.67 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -28.02 -7.30 -35.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240037331.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.947 kcal (2) G-P(sol) polarization free energy of solvation -28.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds