Wall clock time and date at job start Tue Mar 31 2020 05:23:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86800 * 119.99994 * 2 1 4 4 H 1.48497 * 109.47145 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47469 * 300.00745 * 3 2 1 6 6 H 1.48509 * 109.46968 * 60.00472 * 3 2 1 7 7 C 1.39921 * 120.00178 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00608 * 163.62895 * 7 2 1 9 9 C 1.41445 * 120.00006 * 343.63593 * 7 2 1 10 10 C 1.40823 * 120.60286 * 155.74112 * 9 7 2 11 11 N 1.31501 * 120.68952 * 179.97438 * 10 9 7 12 12 C 1.31918 * 122.13159 * 359.76506 * 11 10 9 13 13 C 1.39770 * 121.13638 * 0.50268 * 12 11 10 14 14 C 1.48207 * 120.42381 * 179.77109 * 13 12 11 15 15 C 1.38874 * 120.28389 * 129.74077 * 14 13 12 16 16 C 1.38708 * 120.21306 * 179.97438 * 15 14 13 17 17 F 1.35093 * 119.61975 * 180.02562 * 16 15 14 18 18 C 1.38092 * 120.75798 * 359.97364 * 16 15 14 19 19 C 1.39110 * 120.16306 * 0.04799 * 18 16 15 20 20 N 1.37740 * 133.32701 * 179.97438 * 19 18 16 21 21 H 0.97002 * 125.08130 * 359.97438 * 20 19 18 22 22 C 1.36854 * 109.84277 * 179.97438 * 20 19 18 23 23 C 1.34327 * 109.87884 * 0.26874 * 22 20 19 24 24 C 1.40567 * 119.53081 * 359.95526 * 19 18 16 25 25 C 1.39281 * 119.16173 * 359.49382 * 13 12 11 26 26 H 0.97001 * 120.00082 * 359.97438 * 1 2 3 27 27 H 1.08004 * 119.65107 * 359.97306 * 10 9 7 28 28 H 1.08003 * 119.43688 * 180.26925 * 12 11 10 29 29 H 1.07998 * 119.89470 * 0.02562 * 15 14 13 30 30 H 1.08002 * 119.91542 * 180.02562 * 18 16 15 31 31 H 1.08003 * 125.05911 * 179.97438 * 22 20 19 32 32 H 1.08008 * 126.49319 * 179.69430 * 23 22 20 33 33 H 1.08001 * 120.96381 * 180.27863 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3464 -0.0006 5 1 1.8835 2.3966 -1.2124 6 1 1.8836 2.3964 1.2126 7 6 2.0079 -1.2117 -0.0005 8 1 3.0551 -1.2307 -0.2642 9 6 1.3437 -2.4120 0.3440 10 6 1.8232 -3.6540 -0.1151 11 7 1.2073 -4.7710 0.2046 12 6 0.1285 -4.7849 0.9637 13 6 -0.4214 -3.5996 1.4599 14 6 -1.6369 -3.6332 2.3072 15 6 -1.6647 -2.9556 3.5191 16 6 -2.8033 -2.9876 4.3107 17 9 -2.8174 -2.3238 5.4872 18 6 -3.9229 -3.6894 3.9095 19 6 -3.9207 -4.3769 2.7002 20 7 -4.8596 -5.1454 2.0483 21 1 -5.7516 -5.3354 2.3788 22 6 -4.3460 -5.6012 0.8644 23 6 -3.0861 -5.1605 0.7133 24 6 -2.7719 -4.3509 1.8905 25 6 0.1907 -2.3867 1.1528 26 1 -0.4850 0.8400 0.0004 27 1 2.7060 -3.6894 -0.7363 28 1 -0.3402 -5.7281 1.2029 29 1 -0.7973 -2.4013 3.8459 30 1 -4.8022 -3.7048 4.5364 31 1 -4.8734 -6.2263 0.1591 32 1 -2.4300 -5.3641 -0.1201 33 1 -0.2069 -1.4539 1.5244 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240038166.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:18 Heat of formation + Delta-G solvation = 31.059711 kcal Electronic energy + Delta-G solvation = -20648.590801 eV Core-core repulsion = 17360.285962 eV Total energy + Delta-G solvation = -3288.304839 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.59540 -40.96130 -38.37440 -36.28574 -34.10570 -32.50607 -30.52963 -29.97055 -28.86145 -27.60163 -25.62151 -23.33654 -22.00142 -21.19136 -20.99699 -20.07227 -18.09637 -17.09859 -16.61355 -15.85084 -15.58104 -15.34416 -15.24463 -14.87893 -14.40073 -14.01111 -13.81028 -13.54060 -13.18485 -12.75603 -12.48781 -12.22008 -11.74977 -11.64273 -11.49471 -11.29833 -11.14197 -10.95796 -10.88440 -10.56952 -9.86906 -9.51184 -9.40067 -8.24685 -8.15852 -7.95399 -7.73954 -7.15483 -6.86890 -4.52091 1.15978 1.74196 2.58266 2.84558 2.92902 3.02593 3.07543 3.16447 3.19094 3.84244 4.08262 4.54413 4.65207 4.93024 5.01780 5.35377 5.45804 5.49695 5.65046 5.65360 5.95602 6.04272 6.18473 6.34945 6.44063 6.53993 6.65755 6.73373 6.89736 6.90921 7.03184 7.08005 7.20423 7.34981 7.64111 7.64967 7.82264 7.88789 8.37863 8.64527 8.66702 9.58622 10.04140 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.016684 B = 0.005576 C = 0.004757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.901087 B = 5020.481673 C = 5884.564991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.074 3.926 3 Si 0.911 3.089 4 H -0.259 1.259 5 H -0.273 1.273 6 H -0.271 1.271 7 C -0.449 4.449 8 H 0.084 0.916 9 C 0.061 3.939 10 C -0.016 4.016 11 N -0.470 5.470 12 C -0.013 4.013 13 C -0.096 4.096 14 C 0.077 3.923 15 C -0.180 4.180 16 C 0.127 3.873 17 F -0.143 7.143 18 C -0.190 4.190 19 C 0.121 3.879 20 N -0.598 5.598 21 H 0.412 0.588 22 C 0.031 3.969 23 C -0.173 4.173 24 C -0.109 4.109 25 C -0.110 4.110 26 H 0.283 0.717 27 H 0.127 0.873 28 H 0.122 0.878 29 H 0.136 0.864 30 H 0.125 0.875 31 H 0.169 0.831 32 H 0.150 0.850 33 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.304 -4.645 4.161 11.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.145 4.145 3 Si 0.735 3.265 4 H -0.182 1.182 5 H -0.199 1.199 6 H -0.196 1.196 7 C -0.479 4.479 8 H 0.102 0.898 9 C 0.057 3.943 10 C -0.177 4.177 11 N -0.177 5.177 12 C -0.171 4.171 13 C -0.098 4.098 14 C 0.075 3.925 15 C -0.200 4.200 16 C 0.106 3.894 17 F -0.122 7.122 18 C -0.212 4.212 19 C 0.013 3.987 20 N -0.202 5.202 21 H 0.249 0.751 22 C -0.094 4.094 23 C -0.198 4.198 24 C -0.114 4.114 25 C -0.135 4.135 26 H 0.094 0.906 27 H 0.144 0.856 28 H 0.140 0.860 29 H 0.154 0.846 30 H 0.143 0.857 31 H 0.186 0.814 32 H 0.167 0.833 33 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -9.301 -5.299 3.874 11.384 hybrid contribution -0.601 1.727 0.616 1.929 sum -9.902 -3.572 4.490 11.444 Atomic orbital electron populations 1.69789 1.07642 1.29601 1.34292 1.25967 0.94795 1.01614 0.92118 0.86204 0.80984 0.80588 0.78707 1.18202 1.19858 1.19577 1.19580 0.97792 0.90626 1.39911 0.89768 1.18464 0.92113 0.93780 0.89993 1.22557 1.02320 0.88116 1.04658 1.66955 1.07893 1.31577 1.11300 1.21751 0.96682 0.95252 1.03443 1.19366 0.94631 0.95706 1.00133 1.18161 0.91728 0.91082 0.91524 1.20951 0.98215 1.05283 0.95589 1.17013 0.94640 0.95194 0.82516 1.91458 1.97029 1.78696 1.44997 1.19544 0.99196 1.05320 0.97149 1.17673 0.90026 0.96767 0.94198 1.41665 1.14591 1.45447 1.18517 0.75143 1.21773 0.95503 1.02913 0.89176 1.21808 0.95910 1.02750 0.99361 1.19164 0.93169 1.02808 0.96269 1.21828 0.97288 0.95806 0.98621 0.90554 0.85578 0.86045 0.84648 0.85666 0.81376 0.83273 0.85098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.68 10.90 55.55 0.61 -19.08 16 2 C 0.07 1.77 5.20 -17.35 -0.09 1.68 16 3 Si 0.91 17.96 29.59 -169.99 -5.03 12.93 16 4 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 5 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 6 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 7 C -0.45 -11.35 9.09 -37.73 -0.34 -11.70 16 8 H 0.08 2.02 7.90 -52.49 -0.41 1.61 16 9 C 0.06 1.57 5.59 -106.71 -0.60 0.97 16 10 C -0.02 -0.38 10.96 -16.72 -0.18 -0.57 16 11 N -0.47 -11.42 10.32 -12.26 -0.13 -11.55 16 12 C -0.01 -0.31 10.06 -16.94 -0.17 -0.48 16 13 C -0.10 -2.20 5.43 -104.84 -0.57 -2.77 16 14 C 0.08 1.55 5.51 -104.67 -0.58 0.98 16 15 C -0.18 -3.42 9.49 -39.17 -0.37 -3.79 16 16 C 0.13 2.15 7.27 -39.46 -0.29 1.86 16 17 F -0.14 -2.36 17.25 2.25 0.04 -2.32 16 18 C -0.19 -2.87 10.03 -39.31 -0.39 -3.27 16 19 C 0.12 1.88 7.27 -84.01 -0.61 1.27 16 20 N -0.60 -7.10 6.08 -10.64 -0.06 -7.17 16 21 H 0.41 3.32 8.96 -40.82 -0.37 2.96 16 22 C 0.03 0.37 11.82 -16.69 -0.20 0.17 16 23 C -0.17 -2.78 10.30 -37.73 -0.39 -3.16 16 24 C -0.11 -1.99 6.03 -104.89 -0.63 -2.63 16 25 C -0.11 -2.76 8.29 -38.20 -0.32 -3.08 16 26 H 0.28 6.45 8.30 -40.82 -0.34 6.11 16 27 H 0.13 2.88 8.06 -52.48 -0.42 2.46 16 28 H 0.12 2.53 7.87 -52.48 -0.41 2.12 16 29 H 0.14 2.55 8.04 -52.49 -0.42 2.13 16 30 H 0.13 1.53 8.06 -52.49 -0.42 1.10 16 31 H 0.17 1.35 8.06 -52.48 -0.42 0.93 16 32 H 0.15 2.43 7.85 -52.48 -0.41 2.02 16 33 H 0.13 3.40 6.20 -52.49 -0.33 3.07 16 LS Contribution 297.08 15.07 4.48 4.48 Total: -1.00 -28.55 297.08 -8.58 -37.13 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -2.76 Total: 10.07 kcal Atomic # 6 Polarization: -18.77 SS G_CDS: -5.73 Total: -24.50 kcal Atomic # 7 Polarization: -38.20 SS G_CDS: 0.41 Total: -37.79 kcal Atomic # 9 Polarization: -2.36 SS G_CDS: 0.04 Total: -2.32 kcal Atomic # 14 Polarization: 17.96 SS G_CDS: -5.03 Total: 12.93 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -28.55 -8.58 -37.13 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240038166.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.189 kcal (2) G-P(sol) polarization free energy of solvation -28.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds