Wall clock time and date at job start Tue Mar 31 2020 05:26:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38918 * 119.24250 * 2 1 4 4 C 1.36848 * 119.80844 * 180.02562 * 3 2 1 5 5 C 1.41166 * 118.39178 * 359.73093 * 4 3 2 6 6 C 1.40824 * 120.72535 * 180.26717 * 5 4 3 7 7 H 1.08002 * 120.00284 * 150.76514 * 6 5 4 8 8 C 1.40131 * 119.99643 * 330.76654 * 6 5 4 9 9 N 1.30741 * 119.99515 * 162.89312 * 8 6 5 10 10 Si 1.86795 * 120.00302 * 342.89204 * 8 6 5 11 11 H 1.48505 * 109.47221 * 90.53564 * 10 8 6 12 12 H 1.48492 * 109.47239 * 210.53515 * 10 8 6 13 13 H 1.48502 * 109.46895 * 330.53682 * 10 8 6 14 14 C 1.41907 * 118.55211 * 0.50839 * 5 4 3 15 15 C 1.47713 * 119.99362 * 179.76143 * 14 5 4 16 16 C 1.39880 * 119.98059 * 136.54995 * 15 14 5 17 17 C 1.36506 * 120.19058 * 179.97438 * 16 15 14 18 18 C 1.39867 * 120.15263 * 0.02562 * 17 16 15 19 19 C 1.43200 * 120.01440 * 179.97438 * 18 17 16 20 20 N 8.87286 * 125.08894 * 179.84806 * 2 1 3 21 21 C 1.40061 * 119.96392 * 0.25274 * 18 17 16 22 22 F 1.35092 * 120.09748 * 179.70211 * 21 18 17 23 23 C 1.37945 * 119.80564 * 359.44256 * 21 18 17 24 24 N 1.31691 * 119.23838 * 179.97438 * 2 1 3 25 25 H 1.09002 * 109.47199 * 270.01733 * 1 2 3 26 26 H 1.08994 * 109.47404 * 30.01911 * 1 2 3 27 27 H 1.08998 * 109.46961 * 150.02257 * 1 2 3 28 28 H 1.08002 * 120.09547 * 0.02668 * 3 2 1 29 29 H 1.08000 * 120.80483 * 180.02562 * 4 3 2 30 30 H 0.97001 * 119.99691 * 180.02562 * 9 8 6 31 31 H 1.07993 * 119.90634 * 359.94827 * 16 15 14 32 32 H 1.07999 * 119.92357 * 179.97438 * 17 16 15 33 33 H 1.07997 * 120.07430 * 180.25607 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1857 1.2121 0.0000 4 6 3.5541 1.2257 -0.0005 5 6 4.2376 -0.0095 0.0048 6 6 5.6452 -0.0529 0.0101 7 1 6.1581 -0.8843 0.4707 8 6 6.3803 0.9827 -0.5821 9 7 7.6483 1.1287 -0.2993 10 14 5.5485 2.1544 -1.7757 11 1 5.0046 3.3175 -1.0295 12 1 6.5387 2.6274 -2.7761 13 1 4.4410 1.4499 -2.4701 14 6 3.4754 -1.2065 -0.0007 15 6 4.1578 -2.5165 -0.0007 16 6 3.6974 -3.5445 0.8287 17 6 4.3246 -4.7570 0.8317 18 6 5.4315 -4.9775 0.0056 19 6 6.0874 -6.2504 0.0115 20 7 6.6076 -7.2603 0.0193 21 6 5.9015 -3.9508 -0.8231 22 9 6.9740 -4.1589 -1.6176 23 6 5.2627 -2.7282 -0.8296 24 7 2.1503 -1.1491 0.0005 25 1 -0.3634 0.0003 1.0277 26 1 -0.3634 0.8897 -0.5141 27 1 -0.3633 -0.8902 -0.5135 28 1 1.6349 2.1412 0.0004 29 1 4.0980 2.1587 -0.0001 30 1 8.1571 1.8458 -0.7089 31 1 2.8437 -3.3784 1.4687 32 1 3.9657 -5.5475 1.4740 33 1 5.6189 -1.9348 -1.4699 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240145559.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:37 Heat of formation + Delta-G solvation = 26.346506 kcal Electronic energy + Delta-G solvation = -20642.633891 eV Core-core repulsion = 17354.124672 eV Total energy + Delta-G solvation = -3288.509219 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -48.64813 -39.50647 -38.26905 -36.19658 -34.51665 -32.66221 -31.85061 -30.49817 -29.81318 -28.18875 -25.21496 -23.37078 -22.58535 -21.46916 -20.67207 -18.81870 -17.74886 -17.01661 -16.23425 -15.86919 -15.42658 -15.07952 -14.74295 -14.13387 -13.75706 -13.71312 -13.61861 -13.46465 -13.20246 -13.05654 -12.59973 -12.37963 -12.22479 -12.00336 -11.81721 -11.63780 -11.43615 -11.32268 -11.05713 -10.89067 -10.48525 -10.16133 -9.72122 -8.98836 -8.55826 -8.49297 -8.36161 -7.71237 -7.34442 -4.84043 0.81988 1.60193 2.12027 2.40819 2.82231 2.83576 2.95643 3.03990 3.23893 3.64154 4.04014 4.07364 4.21525 4.38884 4.93192 5.04301 5.19760 5.51389 5.60664 5.65821 5.72551 5.90979 6.01746 6.14266 6.15903 6.20315 6.29150 6.35812 6.44500 6.49792 6.65364 6.87166 6.90948 7.10338 7.19086 7.33880 7.53010 7.65426 7.90830 8.12367 8.31326 9.13375 9.63609 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.014909 B = 0.006799 C = 0.004940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.617684 B = 4117.262968 C = 5666.561046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.013 4.013 3 C -0.108 4.108 4 C -0.203 4.203 5 C 0.063 3.937 6 C -0.417 4.417 7 H 0.106 0.894 8 C 0.081 3.919 9 N -0.775 5.775 10 Si 0.911 3.089 11 H -0.264 1.264 12 H -0.284 1.284 13 H -0.244 1.244 14 C 0.011 3.989 15 C 0.087 3.913 16 C -0.123 4.123 17 C -0.046 4.046 18 C -0.098 4.098 19 C 0.268 3.732 20 N -0.435 5.435 21 C 0.145 3.855 22 F -0.134 7.134 23 C -0.133 4.133 24 N -0.429 5.429 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.059 0.941 28 H 0.107 0.893 29 H 0.115 0.885 30 H 0.293 0.707 31 H 0.136 0.864 32 H 0.134 0.866 33 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.446 -0.386 -0.224 6.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.154 4.154 3 C -0.128 4.128 4 C -0.228 4.228 5 C 0.057 3.943 6 C -0.444 4.444 7 H 0.124 0.876 8 C -0.143 4.143 9 N -0.396 5.396 10 Si 0.737 3.263 11 H -0.190 1.190 12 H -0.211 1.211 13 H -0.167 1.167 14 C -0.128 4.128 15 C 0.085 3.915 16 C -0.142 4.142 17 C -0.067 4.067 18 C -0.103 4.103 19 C -0.046 4.046 20 N -0.110 5.110 21 C 0.123 3.877 22 F -0.112 7.112 23 C -0.153 4.153 24 N -0.137 5.137 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.125 0.875 29 H 0.133 0.867 30 H 0.104 0.896 31 H 0.154 0.846 32 H 0.152 0.848 33 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -5.767 -2.624 -0.246 6.341 hybrid contribution 0.446 1.959 -0.543 2.081 sum -5.321 -0.665 -0.789 5.421 Atomic orbital electron populations 1.20304 0.90863 1.01305 1.00838 1.20271 0.95171 0.88093 1.11850 1.21240 0.94767 0.97813 0.98960 1.21257 0.94168 0.97686 1.09720 1.18369 0.94282 0.91053 0.90563 1.19647 0.89570 1.06138 1.29019 0.87640 1.26316 0.94835 0.96719 0.96397 1.69621 1.08809 1.27774 1.33436 0.86338 0.79848 0.80272 0.79887 1.19019 1.21080 1.16709 1.19167 0.88378 0.90620 1.14646 1.18412 0.90890 0.91626 0.90542 1.20989 1.00956 0.92062 1.00186 1.20565 0.92419 0.97668 0.95998 1.15946 1.00928 0.87618 1.05775 1.25508 0.93074 0.92702 0.93302 1.81168 1.09156 1.11686 1.09037 1.17475 0.85587 0.93574 0.91076 1.91505 1.52791 1.95344 1.71585 1.21412 0.96845 0.95383 1.01625 1.66826 1.09191 1.29453 1.08186 0.92812 0.92710 0.92195 0.87527 0.86727 0.89555 0.84579 0.84810 0.82554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.11 10.15 36.01 0.37 -0.75 16 2 C -0.01 -0.24 6.79 -82.40 -0.56 -0.80 16 3 C -0.11 -2.05 9.64 -39.83 -0.38 -2.44 16 4 C -0.20 -4.27 7.31 -38.97 -0.29 -4.55 16 5 C 0.06 1.38 5.12 -106.40 -0.54 0.84 16 6 C -0.42 -9.53 7.18 -37.89 -0.27 -9.81 16 7 H 0.11 2.53 6.71 -52.49 -0.35 2.18 16 8 C 0.08 1.82 5.44 -17.31 -0.09 1.73 16 9 N -0.78 -17.97 13.92 55.56 0.77 -17.19 16 10 Si 0.91 18.01 24.53 -169.99 -4.17 13.84 16 11 H -0.26 -5.04 6.47 56.52 0.37 -4.67 16 12 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 13 H -0.24 -4.99 6.99 56.52 0.40 -4.60 16 14 C 0.01 0.22 6.42 -82.25 -0.53 -0.31 16 15 C 0.09 1.62 5.27 -104.85 -0.55 1.07 16 16 C -0.12 -1.93 9.58 -39.59 -0.38 -2.30 16 17 C -0.05 -0.64 9.68 -39.60 -0.38 -1.02 16 18 C -0.10 -1.52 5.75 -106.68 -0.61 -2.14 16 19 C 0.27 4.37 14.96 -22.47 -0.34 4.03 16 20 N -0.43 -7.63 18.54 41.84 0.78 -6.86 16 21 C 0.14 2.48 7.27 -39.01 -0.28 2.20 16 22 F -0.13 -2.38 16.80 2.25 0.04 -2.35 16 23 C -0.13 -2.43 7.83 -39.13 -0.31 -2.74 16 24 N -0.43 -8.76 10.04 -5.45 -0.05 -8.82 16 25 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.05 0.70 8.07 -51.93 -0.42 0.28 16 27 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 29 H 0.12 2.35 4.52 -52.49 -0.24 2.12 16 30 H 0.29 6.14 8.29 -40.82 -0.34 5.80 16 31 H 0.14 2.00 8.06 -52.49 -0.42 1.58 16 32 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 33 H 0.16 3.02 6.71 -52.49 -0.35 2.67 16 LS Contribution 297.57 15.07 4.48 4.48 Total: -1.00 -24.58 297.57 -5.96 -30.54 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -2.65 Total: 3.33 kcal Atomic # 6 Polarization: -11.83 SS G_CDS: -5.16 Total: -16.98 kcal Atomic # 7 Polarization: -34.36 SS G_CDS: 1.49 Total: -32.87 kcal Atomic # 9 Polarization: -2.38 SS G_CDS: 0.04 Total: -2.35 kcal Atomic # 14 Polarization: 18.01 SS G_CDS: -4.17 Total: 13.84 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -24.58 -5.96 -30.54 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240145559.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.890 kcal (2) G-P(sol) polarization free energy of solvation -24.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds