Wall clock time and date at job start Tue Mar 31 2020 05:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30869 * 1 3 3 Si 1.86797 * 120.00223 * 2 1 4 4 H 1.48498 * 109.47080 * 270.00356 * 3 2 1 5 5 H 1.48504 * 109.46712 * 30.00194 * 3 2 1 6 6 H 1.48500 * 109.47340 * 149.99751 * 3 2 1 7 7 C 1.39888 * 119.99587 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99868 * 162.96324 * 7 2 1 9 9 C 1.41336 * 120.00178 * 342.96029 * 7 2 1 10 10 C 1.40851 * 120.15863 * 334.62195 * 9 7 2 11 11 C 1.37561 * 120.02462 * 180.02562 * 10 9 7 12 12 C 1.38754 * 120.34342 * 0.02790 * 11 10 9 13 13 F 1.35104 * 119.84295 * 179.97438 * 12 11 10 14 14 C 1.40000 * 120.31572 * 359.94981 * 12 11 10 15 15 C 1.48402 * 120.01203 * 180.02562 * 14 12 11 16 16 C 1.41424 * 119.98036 * 130.00697 * 15 14 12 17 17 C 1.35780 * 119.59972 * 179.97438 * 16 15 14 18 18 C 1.41050 * 119.49165 * 359.97438 * 17 16 15 19 19 N 1.32572 * 132.15026 * 179.97438 * 18 17 16 20 20 C 1.33512 * 109.18130 * 180.02562 * 19 18 17 21 21 C 1.35088 * 108.62978 * 0.02562 * 20 19 18 22 22 N 1.36892 * 107.16636 * 0.02562 * 21 20 19 23 23 C 1.36086 * 119.98430 * 310.20236 * 15 14 12 24 24 C 1.38652 * 119.97017 * 0.30565 * 14 12 11 25 25 H 0.97002 * 119.99803 * 359.97438 * 1 2 3 26 26 H 1.08001 * 119.99043 * 359.97438 * 10 9 7 27 27 H 1.07993 * 119.83059 * 180.02562 * 11 10 9 28 28 H 1.08000 * 120.20452 * 359.97438 * 16 15 14 29 29 H 1.07992 * 120.25802 * 179.97438 * 17 16 15 30 30 H 1.08001 * 125.68142 * 180.02562 * 20 19 18 31 31 H 1.08001 * 126.41384 * 179.97438 * 21 20 19 32 32 H 1.07998 * 119.75753 * 359.79789 * 23 15 14 33 33 H 1.07999 * 120.17012 * 179.72258 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.4902 2.0464 -1.4001 5 1 1.4402 2.6526 0.7001 6 1 3.5403 1.4401 0.7001 7 6 2.0080 -1.2115 -0.0005 8 1 3.0525 -1.2320 -0.2746 9 6 1.3479 -2.4088 0.3576 10 6 0.2178 -2.3698 1.1975 11 6 -0.4223 -3.5368 1.5447 12 6 0.0394 -4.7569 1.0721 13 9 -0.5967 -5.8970 1.4200 14 6 1.1610 -4.8123 0.2361 15 6 1.6488 -6.1209 -0.2659 16 6 1.9041 -6.2979 -1.6456 17 6 2.3507 -7.4983 -2.0964 18 6 2.5540 -8.5519 -1.1810 19 7 2.9731 -9.7996 -1.3393 20 6 2.9956 -10.4089 -0.1515 21 6 2.5815 -9.5336 0.7904 22 7 2.2985 -8.3564 0.1515 23 6 1.8463 -7.1511 0.6010 24 6 1.8194 -3.6445 -0.1178 25 1 -0.4850 0.8401 0.0004 26 1 -0.1458 -1.4234 1.5697 27 1 -1.2887 -3.5032 2.1885 28 1 1.7449 -5.4832 -2.3365 29 1 2.5487 -7.6453 -3.1478 30 1 3.2951 -11.4312 0.0265 31 1 2.4898 -9.7267 1.8490 32 1 1.6500 -7.0110 1.6537 33 1 2.6876 -3.6839 -0.7589 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240218848.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:06 Heat of formation + Delta-G solvation = 44.984333 kcal Electronic energy + Delta-G solvation = -20457.451356 eV Core-core repulsion = 17169.750333 eV Total energy + Delta-G solvation = -3287.701022 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.39803 -43.72584 -39.68856 -38.12369 -35.51545 -34.63731 -32.87025 -31.63574 -29.81026 -29.35502 -26.98180 -24.92614 -24.13809 -22.79460 -22.63872 -22.11681 -19.34185 -18.68322 -18.12616 -17.66832 -17.18815 -16.89095 -16.51768 -16.32660 -16.09258 -15.56928 -15.34596 -14.86555 -14.62261 -14.41542 -13.94346 -13.75027 -13.56725 -13.31877 -12.89993 -12.80116 -12.64167 -12.53960 -12.17957 -12.01322 -11.78494 -11.45231 -11.18206 -11.03745 -10.08584 -9.46336 -9.17675 -8.76445 -8.70579 -6.38931 -0.30493 0.14911 0.74854 0.88667 1.42799 1.47714 1.56509 1.63083 1.91997 2.20697 2.48593 2.62935 3.26598 3.45347 3.51650 3.69115 3.85655 3.88589 4.03733 4.27749 4.42367 4.45994 4.54156 4.86083 4.91513 4.94437 4.97950 5.03587 5.20464 5.29830 5.46013 5.48546 5.68366 5.69710 5.84513 5.97087 6.02225 6.19438 6.54417 6.83896 6.84778 6.85930 8.26797 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.029388 B = 0.004122 C = 0.003788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.553018 B = 6790.916243 C = 7390.364432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.039 3.961 3 Si 0.980 3.020 4 H -0.263 1.263 5 H -0.268 1.268 6 H -0.258 1.258 7 C -0.484 4.484 8 H 0.085 0.915 9 C 0.080 3.920 10 C -0.154 4.154 11 C -0.128 4.128 12 C -0.040 4.040 13 F -0.164 7.164 14 C -0.045 4.045 15 C -0.056 4.056 16 C -0.084 4.084 17 C -0.086 4.086 18 C 0.193 3.807 19 N -0.526 5.526 20 C 0.019 3.981 21 C -0.104 4.104 22 N -0.363 5.363 23 C 0.059 3.941 24 C -0.188 4.188 25 H 0.292 0.708 26 H 0.116 0.884 27 H 0.122 0.878 28 H 0.156 0.844 29 H 0.174 0.826 30 H 0.213 0.787 31 H 0.213 0.787 32 H 0.169 0.831 33 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.375 -8.339 1.164 9.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.177 4.177 3 Si 0.801 3.199 4 H -0.188 1.188 5 H -0.193 1.193 6 H -0.182 1.182 7 C -0.512 4.512 8 H 0.103 0.897 9 C 0.077 3.923 10 C -0.174 4.174 11 C -0.147 4.147 12 C -0.060 4.060 13 F -0.144 7.144 14 C -0.047 4.047 15 C -0.059 4.059 16 C -0.107 4.107 17 C -0.106 4.106 18 C -0.049 4.049 19 N -0.247 5.247 20 C -0.132 4.132 21 C -0.235 4.235 22 N -0.034 5.034 23 C -0.063 4.063 24 C -0.207 4.207 25 H 0.103 0.897 26 H 0.134 0.866 27 H 0.139 0.861 28 H 0.174 0.826 29 H 0.191 0.809 30 H 0.230 0.770 31 H 0.229 0.771 32 H 0.187 0.813 33 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 3.366 -8.638 0.492 9.283 hybrid contribution -0.388 1.012 0.945 1.438 sum 2.978 -7.626 1.437 8.312 Atomic orbital electron populations 1.69846 1.08967 1.31042 1.34449 1.26725 0.95440 1.04494 0.91077 0.85210 0.79180 0.75947 0.79530 1.18756 1.19259 1.18174 1.19856 0.98385 0.91838 1.41167 0.89706 1.17893 0.91853 0.92989 0.89516 1.21244 0.99186 0.96521 1.00407 1.20812 1.00773 0.91369 1.01747 1.17365 0.98300 0.81499 1.08827 1.91299 1.81940 1.49440 1.91697 1.18126 0.95567 0.91751 0.99214 1.18327 1.01244 0.92456 0.93888 1.21313 0.97283 0.97928 0.94204 1.20416 1.00914 0.89190 1.00067 1.21397 1.05032 0.95102 0.83405 1.70716 1.23282 1.03210 1.27503 1.23103 1.01585 1.01474 0.86994 1.23365 1.13970 0.84190 1.01934 1.42935 1.40754 1.09798 1.09901 1.21653 1.00985 0.82948 1.00693 1.21024 1.03321 0.90685 1.05716 0.89731 0.86591 0.86053 0.82605 0.80864 0.77013 0.77057 0.81340 0.86455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -39.02 10.96 21.82 0.24 -38.78 16 2 C 0.04 1.78 5.14 85.24 0.44 2.22 16 3 Si 0.98 34.70 29.59 68.60 2.03 36.73 16 4 H -0.26 -9.04 7.11 99.48 0.71 -8.33 16 5 H -0.27 -9.12 7.11 99.48 0.71 -8.41 16 6 H -0.26 -9.00 7.11 99.48 0.71 -8.29 16 7 C -0.48 -23.42 9.04 23.43 0.21 -23.21 16 8 H 0.08 3.91 7.90 -2.91 -0.02 3.89 16 9 C 0.08 3.89 5.56 -21.31 -0.12 3.78 16 10 C -0.15 -7.39 8.68 22.75 0.20 -7.19 16 11 C -0.13 -5.62 9.99 22.23 0.22 -5.39 16 12 C -0.04 -1.71 7.14 22.82 0.16 -1.54 16 13 F -0.16 -6.66 15.81 44.97 0.71 -5.95 16 14 C -0.04 -1.84 5.46 -20.04 -0.11 -1.95 16 15 C -0.06 -1.99 5.29 -20.29 -0.11 -2.09 16 16 C -0.08 -2.60 9.53 22.48 0.21 -2.39 16 17 C -0.09 -2.50 10.09 22.39 0.23 -2.28 16 18 C 0.19 6.26 7.80 134.13 1.05 7.31 16 19 N -0.53 -16.69 11.32 -194.26 -2.20 -18.89 16 20 C 0.02 0.48 11.82 83.71 0.99 1.47 16 21 C -0.10 -2.56 11.76 83.18 0.98 -1.59 16 22 N -0.36 -11.19 2.94 -351.18 -1.03 -12.22 16 23 C 0.06 1.93 9.73 83.49 0.81 2.75 16 24 C -0.19 -8.23 9.26 22.93 0.21 -8.02 16 25 H 0.29 12.57 8.30 -92.71 -0.77 11.80 16 26 H 0.12 5.76 6.18 -2.91 -0.02 5.74 16 27 H 0.12 4.76 8.06 -2.91 -0.02 4.74 16 28 H 0.16 4.42 8.06 -2.91 -0.02 4.40 16 29 H 0.17 4.01 8.06 -2.91 -0.02 3.99 16 30 H 0.21 3.41 8.06 -2.91 -0.02 3.39 16 31 H 0.21 3.50 8.06 -2.91 -0.02 3.47 16 32 H 0.17 5.12 7.66 -2.91 -0.02 5.10 16 33 H 0.12 4.78 8.04 -2.91 -0.02 4.75 16 Total: -1.00 -57.28 296.62 6.27 -51.00 By element: Atomic # 1 Polarization: 25.09 SS G_CDS: 1.15 Total: 26.24 kcal Atomic # 6 Polarization: -43.51 SS G_CDS: 5.38 Total: -38.13 kcal Atomic # 7 Polarization: -66.90 SS G_CDS: -2.99 Total: -69.89 kcal Atomic # 9 Polarization: -6.66 SS G_CDS: 0.71 Total: -5.95 kcal Atomic # 14 Polarization: 34.70 SS G_CDS: 2.03 Total: 36.73 kcal Total: -57.28 6.27 -51.00 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240218848.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.987 kcal (2) G-P(sol) polarization free energy of solvation -57.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds