Wall clock time and date at job start Tue Mar 31 2020 05:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30740 * 1 3 3 Si 1.86803 * 119.99597 * 2 1 4 4 H 1.48505 * 109.47265 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.46910 * 120.00408 * 3 2 1 6 6 H 1.48504 * 109.46828 * 240.00236 * 3 2 1 7 7 C 1.40086 * 120.00504 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99847 * 2.95847 * 7 2 1 9 9 C 1.40603 * 120.00455 * 182.96945 * 7 2 1 10 10 N 1.33758 * 119.95945 * 7.10651 * 9 7 2 11 11 C 1.31253 * 121.64440 * 180.02562 * 10 9 7 12 12 C 1.39144 * 121.39988 * 0.02562 * 11 10 9 13 13 C 1.38218 * 119.76831 * 359.97438 * 12 11 10 14 14 C 1.39979 * 118.46123 * 359.73118 * 13 12 11 15 15 C 1.47285 * 120.67245 * 180.26169 * 14 13 12 16 16 C 1.41136 * 120.36140 * 269.99154 * 15 14 13 17 17 C 1.45997 * 133.98705 * 0.72755 * 16 15 14 18 18 C 1.34635 * 106.99649 * 179.51130 * 17 16 15 19 19 N 1.36556 * 109.84826 * 359.74953 * 18 17 16 20 20 H 0.96997 * 125.08079 * 180.02562 * 19 18 17 21 21 C 1.37854 * 109.84425 * 0.02562 * 19 18 17 22 22 C 1.39156 * 133.28333 * 179.97438 * 21 19 18 23 23 C 1.38039 * 120.33002 * 179.97438 * 22 21 19 24 24 C 1.38501 * 120.86363 * 0.02562 * 23 22 21 25 25 F 1.35090 * 119.94480 * 180.02562 * 24 23 22 26 26 H 0.97002 * 119.99364 * 174.87043 * 1 2 3 27 27 H 1.07998 * 119.30137 * 179.97438 * 11 10 9 28 28 H 1.07995 * 120.11336 * 180.02562 * 12 11 10 29 29 H 1.07997 * 120.76563 * 180.02562 * 13 12 11 30 30 H 1.07993 * 126.49742 * 359.25792 * 17 16 15 31 31 H 1.08000 * 125.07303 * 179.77918 * 18 17 16 32 32 H 1.07996 * 119.82942 * 359.97438 * 22 21 19 33 33 H 1.07997 * 119.56951 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 1.2762 2.7465 0.0006 5 1 3.0951 1.6965 1.2125 6 1 3.0950 1.6965 -1.2126 7 6 2.0079 -1.2131 -0.0005 8 1 1.4691 -2.1478 -0.0492 9 6 3.4126 -1.2140 0.0625 10 7 4.0727 -0.0686 0.2660 11 6 5.3832 -0.0311 0.3301 12 6 6.1492 -1.1841 0.1886 13 6 5.5267 -2.3997 -0.0238 14 6 4.1286 -2.4317 -0.0847 15 6 3.4149 -3.7014 -0.3032 16 6 3.1173 -4.1362 -1.6125 17 6 3.3753 -3.5953 -2.9438 18 6 2.8574 -4.4667 -3.8299 19 7 2.2956 -5.5213 -3.1689 20 1 1.8598 -6.2769 -3.5931 21 6 2.4403 -5.3516 -1.8085 22 6 2.0586 -6.1107 -0.7064 23 6 2.3474 -5.6776 0.5721 24 6 3.0189 -4.4849 0.7835 25 9 3.2925 -4.0791 2.0426 26 1 -0.4849 -0.8367 -0.0751 27 1 5.8774 0.9148 0.4954 28 1 7.2262 -1.1294 0.2454 29 1 6.1054 -3.3047 -0.1355 30 1 3.8815 -2.6695 -3.1740 31 1 2.8830 -4.3494 -4.9032 32 1 1.5337 -7.0432 -0.8522 33 1 2.0457 -6.2767 1.4185 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240219280.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:23 Heat of formation + Delta-G solvation = 29.382506 kcal Electronic energy + Delta-G solvation = -21437.345276 eV Core-core repulsion = 18148.967707 eV Total energy + Delta-G solvation = -3288.377568 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.04443 -40.84095 -38.55593 -36.15438 -33.82389 -32.66443 -30.94141 -30.12777 -28.54005 -27.93566 -25.43243 -23.24389 -21.70112 -21.41422 -20.83139 -20.01726 -18.33930 -17.69289 -16.71666 -16.02821 -15.49982 -15.18974 -14.80464 -14.59554 -14.12412 -13.93047 -13.66566 -13.15627 -12.77159 -12.69921 -12.54865 -12.37106 -12.20228 -12.00001 -11.86503 -11.19613 -10.82674 -10.63545 -10.39288 -10.02028 -9.69744 -9.27335 -9.15514 -8.58957 -7.87179 -7.81683 -7.70923 -7.29730 -7.10195 -4.77076 1.35045 1.85912 2.44696 2.65711 3.01407 3.33990 3.62740 3.70662 4.03820 4.12781 4.46356 4.62749 4.81602 5.00902 5.18560 5.29071 5.46293 5.57035 5.72231 5.77550 5.83119 5.92340 6.15162 6.30529 6.35534 6.41193 6.56509 6.59824 6.75632 6.92066 7.04635 7.12392 7.27344 7.38392 7.46268 7.54831 7.70814 7.74732 8.10023 8.29948 8.65569 9.46609 9.98259 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.015810 B = 0.007510 C = 0.007001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.580376 B = 3727.628295 C = 3998.428950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.043 3.957 3 Si 1.153 2.847 4 H -0.333 1.333 5 H -0.277 1.277 6 H -0.293 1.293 7 C -0.453 4.453 8 H 0.083 0.917 9 C 0.266 3.734 10 N -0.572 5.572 11 C 0.159 3.841 12 C -0.320 4.320 13 C -0.015 4.015 14 C -0.222 4.222 15 C 0.042 3.958 16 C -0.072 4.072 17 C -0.177 4.177 18 C 0.036 3.964 19 N -0.598 5.598 20 H 0.411 0.589 21 C 0.082 3.918 22 C -0.124 4.124 23 C -0.128 4.128 24 C 0.064 3.936 25 F -0.139 7.139 26 H 0.283 0.717 27 H 0.128 0.872 28 H 0.104 0.896 29 H 0.101 0.899 30 H 0.145 0.855 31 H 0.168 0.832 32 H 0.121 0.879 33 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.141 -10.159 -5.563 12.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.179 4.179 3 Si 0.988 3.012 4 H -0.266 1.266 5 H -0.205 1.205 6 H -0.221 1.221 7 C -0.483 4.483 8 H 0.101 0.899 9 C 0.145 3.855 10 N -0.289 5.289 11 C -0.004 4.004 12 C -0.343 4.343 13 C -0.039 4.039 14 C -0.227 4.227 15 C 0.039 3.961 16 C -0.077 4.077 17 C -0.203 4.203 18 C -0.090 4.090 19 N -0.202 5.202 20 H 0.247 0.753 21 C -0.024 4.024 22 C -0.145 4.145 23 C -0.148 4.148 24 C 0.043 3.957 25 F -0.117 7.117 26 H 0.095 0.905 27 H 0.145 0.855 28 H 0.122 0.878 29 H 0.119 0.881 30 H 0.162 0.838 31 H 0.185 0.815 32 H 0.139 0.861 33 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 3.249 -7.978 -5.448 10.192 hybrid contribution 0.402 -2.991 -0.157 3.022 sum 3.651 -10.969 -5.605 12.848 Atomic orbital electron populations 1.70638 1.08255 1.32864 1.30015 1.27909 0.95296 1.06302 0.88419 0.81847 0.70627 0.69290 0.79430 1.26636 1.20502 1.22063 1.20672 0.90583 0.96296 1.40764 0.89930 1.18511 0.93521 0.85816 0.87676 1.66574 1.09279 1.27815 1.25261 1.22200 0.89844 0.96830 0.91551 1.20995 0.98761 0.93843 1.20692 1.20938 0.92821 0.96569 0.93554 1.18913 0.92630 0.92390 1.18724 1.18027 0.95677 0.92907 0.89458 1.19021 1.01566 0.94315 0.92812 1.21682 1.07365 1.01154 0.90060 1.21773 1.00476 0.89007 0.97704 1.41596 1.52615 1.21801 1.04215 0.75278 1.18189 1.02880 0.97291 0.84046 1.19637 1.05133 1.00239 0.89466 1.20571 1.01202 0.95996 0.97060 1.17583 1.03636 0.95224 0.79230 1.91446 1.92215 1.90696 1.37357 0.90547 0.85493 0.87767 0.88107 0.83753 0.81502 0.86073 0.85111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -22.04 13.65 55.55 0.76 -21.28 16 2 C 0.04 1.18 5.52 -17.32 -0.10 1.09 16 3 Si 1.15 28.75 25.58 -169.99 -4.35 24.40 16 4 H -0.33 -8.18 7.11 56.52 0.40 -7.78 16 5 H -0.28 -6.90 6.65 56.52 0.38 -6.53 16 6 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 7 C -0.45 -12.59 9.20 -38.00 -0.35 -12.94 16 8 H 0.08 2.37 7.09 -52.49 -0.37 2.00 16 9 C 0.27 7.06 6.41 -84.68 -0.54 6.52 16 10 N -0.57 -14.70 4.54 -10.88 -0.05 -14.75 16 11 C 0.16 3.54 11.17 -17.46 -0.20 3.34 16 12 C -0.32 -6.63 10.10 -39.25 -0.40 -7.02 16 13 C -0.01 -0.32 9.92 -38.94 -0.39 -0.71 16 14 C -0.22 -5.32 4.93 -104.12 -0.51 -5.83 16 15 C 0.04 0.91 3.93 -104.57 -0.41 0.50 16 16 C -0.07 -1.43 6.19 -104.84 -0.65 -2.08 16 17 C -0.18 -3.14 10.95 -37.75 -0.41 -3.55 16 18 C 0.04 0.48 11.83 -16.72 -0.20 0.28 16 19 N -0.60 -7.75 6.07 -10.62 -0.06 -7.81 16 20 H 0.41 3.67 8.96 -40.82 -0.37 3.31 16 21 C 0.08 1.36 7.27 -83.97 -0.61 0.75 16 22 C -0.12 -1.88 10.06 -39.31 -0.40 -2.27 16 23 C -0.13 -2.16 9.97 -39.56 -0.39 -2.56 16 24 C 0.06 1.33 7.29 -38.94 -0.28 1.04 16 25 F -0.14 -3.09 16.82 2.25 0.04 -3.06 16 26 H 0.28 7.59 8.72 -40.82 -0.36 7.23 16 27 H 0.13 2.37 8.06 -52.49 -0.42 1.95 16 28 H 0.10 1.83 8.06 -52.49 -0.42 1.41 16 29 H 0.10 1.95 8.06 -52.49 -0.42 1.53 16 30 H 0.14 2.60 8.06 -52.49 -0.42 2.17 16 31 H 0.17 1.55 8.06 -52.49 -0.42 1.12 16 32 H 0.12 1.39 8.06 -52.49 -0.42 0.96 16 33 H 0.13 1.82 8.06 -52.49 -0.42 1.40 16 LS Contribution 293.43 15.07 4.42 4.42 Total: -1.00 -31.61 293.43 -7.95 -39.57 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: -2.88 Total: 1.95 kcal Atomic # 6 Polarization: -17.61 SS G_CDS: -5.83 Total: -23.44 kcal Atomic # 7 Polarization: -44.49 SS G_CDS: 0.64 Total: -43.84 kcal Atomic # 9 Polarization: -3.09 SS G_CDS: 0.04 Total: -3.06 kcal Atomic # 14 Polarization: 28.75 SS G_CDS: -4.35 Total: 24.40 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -31.61 -7.95 -39.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240219280.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.948 kcal (2) G-P(sol) polarization free energy of solvation -31.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds