Wall clock time and date at job start Tue Mar 31 2020 05:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30835 * 1 3 3 Si 1.86803 * 120.00046 * 2 1 4 4 H 1.48492 * 109.46992 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46868 * 300.00139 * 3 2 1 6 6 H 1.48497 * 109.47065 * 59.99999 * 3 2 1 7 7 C 1.39994 * 119.99906 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00069 * 164.38877 * 7 2 1 9 9 C 1.40830 * 120.00074 * 344.38409 * 7 2 1 10 10 C 1.40789 * 120.30195 * 332.94007 * 9 7 2 11 11 C 1.36333 * 120.01750 * 180.02562 * 10 9 7 12 12 C 1.39228 * 120.65308 * 359.97438 * 11 10 9 13 13 F 1.35096 * 119.69288 * 180.02562 * 12 11 10 14 14 C 1.38359 * 120.61250 * 359.76264 * 12 11 10 15 15 C 1.39071 * 119.95602 * 0.51283 * 14 12 11 16 16 C 1.47898 * 120.31659 * 179.74637 * 15 14 12 17 17 C 1.38542 * 119.74469 * 129.70435 * 16 15 14 18 18 N 1.33942 * 122.04354 * 180.02562 * 17 16 15 19 19 H 0.97002 * 119.63263 * 179.97438 * 18 17 16 20 20 C 1.37119 * 120.73611 * 359.95567 * 18 17 16 21 21 N 1.32110 * 134.46181 * 180.02562 * 20 18 17 22 22 C 1.33371 * 110.90968 * 180.02562 * 21 20 18 23 23 C 1.35834 * 110.88816 * 359.97438 * 22 21 20 24 24 C 1.41367 * 106.46186 * 0.02562 * 23 22 21 25 25 C 1.38882 * 135.63566 * 180.02562 * 24 23 22 26 26 H 0.97000 * 120.00301 * 359.97438 * 1 2 3 27 27 H 1.08005 * 119.99110 * 0.03826 * 10 9 7 28 28 H 1.07998 * 119.67068 * 179.97438 * 11 10 9 29 29 H 1.08004 * 120.01939 * 180.28777 * 14 12 11 30 30 H 1.08006 * 118.97507 * 0.02562 * 17 16 15 31 31 H 1.08001 * 124.55644 * 180.02562 * 22 21 20 32 32 H 1.07995 * 126.77008 * 180.26489 * 23 22 21 33 33 H 1.07995 * 120.72425 * 359.96967 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6178 0.0000 4 1 3.7023 1.3464 -0.0006 5 1 1.8836 2.3964 -1.2125 6 1 1.8836 2.3964 1.2125 7 6 2.0083 -1.2124 -0.0005 8 1 3.0585 -1.2296 -0.2523 9 6 1.3431 -2.4096 0.3272 10 6 0.2164 -2.3882 1.1711 11 6 -0.4228 -3.5508 1.4850 12 6 0.0267 -4.7672 0.9783 13 9 -0.6217 -5.9074 1.3016 14 6 1.1280 -4.8184 0.1424 15 6 1.8027 -3.6486 -0.1898 16 6 2.9842 -3.6948 -1.0782 17 6 3.0565 -2.8456 -2.1705 18 7 4.1042 -2.8489 -3.0050 19 1 4.1183 -2.2393 -3.7595 20 6 5.1572 -3.7040 -2.8046 21 7 6.2954 -3.9338 -3.4345 22 6 6.9923 -4.8930 -2.8236 23 6 6.3284 -5.3532 -1.7316 24 6 5.1213 -4.6211 -1.6586 25 6 4.0238 -4.5983 -0.8078 26 1 -0.4850 0.8400 0.0004 27 1 -0.1418 -1.4505 1.5697 28 1 -1.2863 -3.5279 2.1332 29 1 1.4656 -5.7667 -0.2490 30 1 2.2429 -2.1597 -2.3547 31 1 7.9554 -5.2545 -3.1525 32 1 6.6595 -6.1235 -1.0509 33 1 3.9712 -5.2616 0.0428 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240391821.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:46 Heat of formation + Delta-G solvation = 46.902645 kcal Electronic energy + Delta-G solvation = -20732.529046 eV Core-core repulsion = 17444.911208 eV Total energy + Delta-G solvation = -3287.617838 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -47.65582 -40.88464 -38.27193 -37.14536 -34.06205 -33.56102 -30.58779 -29.71030 -28.27572 -27.82675 -25.37084 -23.67044 -22.55381 -21.29397 -20.91053 -19.62387 -17.68125 -17.18997 -16.71511 -16.05972 -15.78164 -15.59628 -14.82156 -14.50058 -14.39813 -14.35428 -14.19032 -13.19539 -12.77167 -12.56007 -12.43552 -12.20214 -11.87094 -11.69290 -11.56529 -11.41350 -11.20684 -11.10601 -10.68215 -10.32663 -9.97111 -9.80704 -9.49791 -9.01880 -8.11002 -7.62999 -7.42944 -7.23520 -7.04774 -4.72037 0.71280 1.80213 2.40260 2.63017 2.86517 2.87465 2.90282 2.92428 3.63904 3.85689 4.01679 4.21791 4.72498 5.05725 5.18371 5.25424 5.46921 5.53839 5.68989 5.86054 5.90656 6.07654 6.14283 6.32560 6.52695 6.60362 6.69006 6.78536 6.81116 6.87504 7.11151 7.14225 7.34195 7.41040 7.57063 7.61205 7.65726 7.84301 8.18463 8.44907 8.51676 8.54753 9.78336 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.012352 B = 0.007221 C = 0.004801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2266.307517 B = 3876.558330 C = 5831.263454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.782 5.782 2 C 0.077 3.923 3 Si 0.904 3.096 4 H -0.258 1.258 5 H -0.272 1.272 6 H -0.268 1.268 7 C -0.456 4.456 8 H 0.085 0.915 9 C 0.123 3.877 10 C -0.132 4.132 11 C -0.123 4.123 12 C -0.039 4.039 13 F -0.172 7.172 14 C -0.096 4.096 15 C -0.155 4.155 16 C -0.084 4.084 17 C 0.164 3.836 18 N -0.493 5.493 19 H 0.419 0.581 20 C 0.232 3.768 21 N -0.553 5.553 22 C 0.044 3.956 23 C -0.246 4.246 24 C -0.170 4.170 25 C 0.032 3.968 26 H 0.286 0.714 27 H 0.128 0.872 28 H 0.102 0.898 29 H 0.105 0.895 30 H 0.188 0.812 31 H 0.149 0.851 32 H 0.128 0.872 33 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.365 -0.764 -1.932 3.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C -0.143 4.143 3 Si 0.728 3.272 4 H -0.182 1.182 5 H -0.197 1.197 6 H -0.193 1.193 7 C -0.485 4.485 8 H 0.103 0.897 9 C 0.120 3.880 10 C -0.151 4.151 11 C -0.143 4.143 12 C -0.058 4.058 13 F -0.151 7.151 14 C -0.115 4.115 15 C -0.157 4.157 16 C -0.089 4.089 17 C 0.023 3.977 18 N -0.085 5.085 19 H 0.255 0.745 20 C -0.014 4.014 21 N -0.274 5.274 22 C -0.101 4.101 23 C -0.270 4.270 24 C -0.178 4.178 25 C 0.008 3.992 26 H 0.098 0.902 27 H 0.146 0.854 28 H 0.121 0.879 29 H 0.123 0.877 30 H 0.205 0.795 31 H 0.166 0.834 32 H 0.146 0.854 33 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 2.569 -0.183 -2.834 3.829 hybrid contribution -0.085 0.428 0.584 0.729 sum 2.484 0.245 -2.250 3.360 Atomic orbital electron populations 1.69777 1.07578 1.29972 1.33268 1.25953 0.94769 1.01474 0.92107 0.86295 0.81138 0.80702 0.79104 1.18166 1.19685 1.19282 1.19584 0.97487 0.90621 1.40787 0.89713 1.17577 0.90852 0.91120 0.88416 1.20938 0.98103 0.96569 0.99464 1.20541 1.00361 0.91985 1.01370 1.17187 0.98455 0.81439 1.08765 1.91306 1.81483 1.49777 1.92527 1.20522 0.95143 0.97380 0.98431 1.17926 0.98995 0.93395 1.05378 1.18046 0.96520 0.98325 0.96050 1.22694 0.88600 0.97499 0.88877 1.40383 1.13710 1.29882 1.24484 0.74463 1.20411 0.90772 0.93980 0.96202 1.69464 1.04013 1.21517 1.32454 1.22089 0.98843 0.94998 0.94212 1.21187 0.96172 1.06245 1.03380 1.20068 0.97785 1.01843 0.98092 1.21620 0.89296 0.93253 0.95069 0.90238 0.85393 0.87949 0.87702 0.79532 0.83389 0.85416 0.85016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -16.75 10.99 55.55 0.61 -16.14 16 2 C 0.08 1.59 5.16 -17.32 -0.09 1.50 16 3 Si 0.90 15.92 29.59 -169.99 -5.03 10.89 16 4 H -0.26 -4.66 7.11 56.52 0.40 -4.26 16 5 H -0.27 -4.72 7.11 56.52 0.40 -4.32 16 6 H -0.27 -4.78 7.11 56.52 0.40 -4.37 16 7 C -0.46 -9.67 7.04 -37.94 -0.27 -9.93 16 8 H 0.08 1.77 6.65 -52.48 -0.35 1.42 16 9 C 0.12 2.68 5.53 -106.55 -0.59 2.09 16 10 C -0.13 -2.90 8.61 -39.30 -0.34 -3.23 16 11 C -0.12 -2.59 9.94 -39.90 -0.40 -2.99 16 12 C -0.04 -0.82 7.31 -39.17 -0.29 -1.10 16 13 F -0.17 -3.56 17.26 2.25 0.04 -3.52 16 14 C -0.10 -1.91 9.48 -39.23 -0.37 -2.29 16 15 C -0.15 -3.10 5.50 -104.23 -0.57 -3.67 16 16 C -0.08 -1.51 4.92 -105.03 -0.52 -2.02 16 17 C 0.16 2.59 9.08 -16.52 -0.15 2.44 16 18 N -0.49 -7.34 5.27 -10.36 -0.05 -7.39 16 19 H 0.42 4.80 8.91 -40.82 -0.36 4.44 16 20 C 0.23 4.22 8.63 -153.94 -1.33 2.89 16 21 N -0.55 -10.56 11.17 -11.10 -0.12 -10.68 16 22 C 0.04 0.76 11.69 -17.74 -0.21 0.56 16 23 C -0.25 -4.28 10.99 -39.25 -0.43 -4.71 16 24 C -0.17 -3.12 6.41 -105.00 -0.67 -3.80 16 25 C 0.03 0.56 9.65 -38.54 -0.37 0.19 16 26 H 0.29 5.61 8.30 -40.82 -0.34 5.27 16 27 H 0.13 2.89 6.26 -52.48 -0.33 2.56 16 28 H 0.10 1.95 8.06 -52.49 -0.42 1.53 16 29 H 0.10 1.91 8.04 -52.48 -0.42 1.49 16 30 H 0.19 2.75 7.20 -52.48 -0.38 2.37 16 31 H 0.15 2.12 8.06 -52.49 -0.42 1.69 16 32 H 0.13 1.91 8.06 -52.49 -0.42 1.49 16 33 H 0.13 2.11 8.06 -52.49 -0.42 1.69 16 LS Contribution 293.14 15.07 4.42 4.42 Total: -1.00 -26.10 293.14 -9.40 -35.50 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -2.67 Total: 11.01 kcal Atomic # 6 Polarization: -17.48 SS G_CDS: -6.59 Total: -24.07 kcal Atomic # 7 Polarization: -34.65 SS G_CDS: 0.43 Total: -34.22 kcal Atomic # 9 Polarization: -3.56 SS G_CDS: 0.04 Total: -3.52 kcal Atomic # 14 Polarization: 15.92 SS G_CDS: -5.03 Total: 10.89 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -26.10 -9.40 -35.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240391821.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.403 kcal (2) G-P(sol) polarization free energy of solvation -26.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds