Wall clock time and date at job start Tue Mar 31 2020 05:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30835 * 1 3 3 Si 1.86803 * 120.00046 * 2 1 4 4 H 1.48492 * 109.46992 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46868 * 300.00139 * 3 2 1 6 6 H 1.48497 * 109.47065 * 59.99999 * 3 2 1 7 7 C 1.39994 * 119.99906 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00069 * 164.38877 * 7 2 1 9 9 C 1.40830 * 120.00074 * 344.38409 * 7 2 1 10 10 C 1.40789 * 120.30195 * 332.94007 * 9 7 2 11 11 C 1.36333 * 120.01750 * 180.02562 * 10 9 7 12 12 C 1.39228 * 120.65308 * 359.97438 * 11 10 9 13 13 F 1.35096 * 119.69288 * 180.02562 * 12 11 10 14 14 C 1.38359 * 120.61250 * 359.76264 * 12 11 10 15 15 C 1.39071 * 119.95602 * 0.51283 * 14 12 11 16 16 C 1.47898 * 120.31659 * 179.74637 * 15 14 12 17 17 C 1.38542 * 119.74469 * 129.70435 * 16 15 14 18 18 N 1.33942 * 122.04354 * 180.02562 * 17 16 15 19 19 H 0.97002 * 119.63263 * 179.97438 * 18 17 16 20 20 C 1.37119 * 120.73611 * 359.95567 * 18 17 16 21 21 N 1.32110 * 134.46181 * 180.02562 * 20 18 17 22 22 C 1.33371 * 110.90968 * 180.02562 * 21 20 18 23 23 C 1.35834 * 110.88816 * 359.97438 * 22 21 20 24 24 C 1.41367 * 106.46186 * 0.02562 * 23 22 21 25 25 C 1.38882 * 135.63566 * 180.02562 * 24 23 22 26 26 H 0.97000 * 120.00301 * 359.97438 * 1 2 3 27 27 H 1.08005 * 119.99110 * 0.03826 * 10 9 7 28 28 H 1.07998 * 119.67068 * 179.97438 * 11 10 9 29 29 H 1.08004 * 120.01939 * 180.28777 * 14 12 11 30 30 H 1.08006 * 118.97507 * 0.02562 * 17 16 15 31 31 H 1.08001 * 124.55644 * 180.02562 * 22 21 20 32 32 H 1.07995 * 126.77008 * 180.26489 * 23 22 21 33 33 H 1.07995 * 120.72425 * 359.96967 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6178 0.0000 4 1 3.7023 1.3464 -0.0006 5 1 1.8836 2.3964 -1.2125 6 1 1.8836 2.3964 1.2125 7 6 2.0083 -1.2124 -0.0005 8 1 3.0585 -1.2296 -0.2523 9 6 1.3431 -2.4096 0.3272 10 6 0.2164 -2.3882 1.1711 11 6 -0.4228 -3.5508 1.4850 12 6 0.0267 -4.7672 0.9783 13 9 -0.6217 -5.9074 1.3016 14 6 1.1280 -4.8184 0.1424 15 6 1.8027 -3.6486 -0.1898 16 6 2.9842 -3.6948 -1.0782 17 6 3.0565 -2.8456 -2.1705 18 7 4.1042 -2.8489 -3.0050 19 1 4.1183 -2.2393 -3.7595 20 6 5.1572 -3.7040 -2.8046 21 7 6.2954 -3.9338 -3.4345 22 6 6.9923 -4.8930 -2.8236 23 6 6.3284 -5.3532 -1.7316 24 6 5.1213 -4.6211 -1.6586 25 6 4.0238 -4.5983 -0.8078 26 1 -0.4850 0.8400 0.0004 27 1 -0.1418 -1.4505 1.5697 28 1 -1.2863 -3.5279 2.1332 29 1 1.4656 -5.7667 -0.2490 30 1 2.2429 -2.1597 -2.3547 31 1 7.9554 -5.2545 -3.1525 32 1 6.6595 -6.1235 -1.0509 33 1 3.9712 -5.2616 0.0428 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240391821.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:45 Heat of formation + Delta-G solvation = 36.145433 kcal Electronic energy + Delta-G solvation = -20732.995514 eV Core-core repulsion = 17444.911208 eV Total energy + Delta-G solvation = -3288.084306 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.29355 -42.21187 -39.76312 -38.55621 -35.61030 -34.99599 -32.08052 -31.31114 -29.60670 -29.27417 -26.96895 -25.00802 -24.00955 -22.87994 -22.31338 -21.05605 -19.27641 -18.58233 -18.08552 -17.51510 -17.17965 -17.10471 -16.37277 -16.04140 -15.89289 -15.81455 -15.58077 -14.67766 -14.22611 -14.02735 -13.89104 -13.76618 -13.24701 -13.10589 -13.07219 -12.83140 -12.61536 -12.55800 -12.21781 -11.83044 -11.44104 -11.37626 -11.06388 -10.39667 -9.66900 -9.26407 -8.82893 -8.70760 -8.50124 -6.34897 -0.59637 0.36205 0.81536 1.10050 1.43712 1.47331 1.54665 1.60331 2.17499 2.51511 2.60407 2.68300 3.43988 3.57189 3.70390 3.95195 4.05726 4.12045 4.27256 4.32917 4.42750 4.70688 4.78571 4.99800 5.03865 5.10523 5.20686 5.26584 5.41301 5.44621 5.55468 5.74641 5.87411 5.92748 6.02771 6.05392 6.22644 6.33303 6.56333 6.83888 6.89639 7.20909 8.24457 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.012352 B = 0.007221 C = 0.004801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2266.307517 B = 3876.558330 C = 5831.263454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.051 3.949 3 Si 0.963 3.037 4 H -0.263 1.263 5 H -0.264 1.264 6 H -0.271 1.271 7 C -0.466 4.466 8 H 0.086 0.914 9 C 0.103 3.897 10 C -0.151 4.151 11 C -0.128 4.128 12 C -0.055 4.055 13 F -0.172 7.172 14 C -0.097 4.097 15 C -0.146 4.146 16 C -0.105 4.105 17 C 0.186 3.814 18 N -0.476 5.476 19 H 0.436 0.564 20 C 0.214 3.786 21 N -0.574 5.574 22 C 0.029 3.971 23 C -0.250 4.250 24 C -0.194 4.194 25 C 0.037 3.963 26 H 0.293 0.707 27 H 0.117 0.883 28 H 0.115 0.885 29 H 0.122 0.878 30 H 0.201 0.799 31 H 0.174 0.826 32 H 0.148 0.852 33 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.148 -0.420 -2.546 4.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.168 4.168 3 Si 0.786 3.214 4 H -0.187 1.187 5 H -0.189 1.189 6 H -0.196 1.196 7 C -0.494 4.494 8 H 0.104 0.896 9 C 0.101 3.899 10 C -0.170 4.170 11 C -0.147 4.147 12 C -0.075 4.075 13 F -0.151 7.151 14 C -0.116 4.116 15 C -0.149 4.149 16 C -0.110 4.110 17 C 0.043 3.957 18 N -0.069 5.069 19 H 0.276 0.724 20 C -0.032 4.032 21 N -0.295 5.295 22 C -0.116 4.116 23 C -0.273 4.273 24 C -0.202 4.202 25 C 0.013 3.987 26 H 0.104 0.896 27 H 0.135 0.865 28 H 0.133 0.867 29 H 0.140 0.860 30 H 0.217 0.783 31 H 0.191 0.809 32 H 0.166 0.834 33 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 3.359 0.158 -3.471 4.833 hybrid contribution -0.339 0.294 0.759 0.882 sum 3.020 0.452 -2.712 4.084 Atomic orbital electron populations 1.69811 1.08666 1.31043 1.33567 1.26515 0.95180 1.03642 0.91423 0.85402 0.79522 0.77476 0.79040 1.18685 1.18863 1.19600 1.19673 0.97483 0.90965 1.41305 0.89600 1.17844 0.91170 0.92149 0.88772 1.20899 0.99095 0.96425 1.00566 1.20672 1.00692 0.91838 1.01461 1.17353 0.99109 0.81462 1.09534 1.91298 1.81549 1.49668 1.92601 1.20733 0.94675 0.98211 0.97973 1.18056 0.99162 0.92773 1.04862 1.17971 0.96300 0.99809 0.96907 1.22772 0.88614 0.96292 0.87994 1.40340 1.12589 1.29345 1.24614 0.72423 1.20631 0.91281 0.94784 0.96499 1.69452 1.04560 1.22320 1.33175 1.22567 0.99873 0.94812 0.94332 1.21516 0.95780 1.06416 1.03637 1.20312 0.98517 1.02695 0.98665 1.21674 0.88869 0.93028 0.95165 0.89587 0.86514 0.86731 0.86017 0.78271 0.80857 0.83441 0.83985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -34.18 10.99 21.84 0.24 -33.94 16 2 C 0.05 2.04 5.16 85.27 0.44 2.48 16 3 Si 0.96 31.66 29.59 68.60 2.03 33.69 16 4 H -0.26 -8.80 7.11 99.48 0.71 -8.09 16 5 H -0.26 -8.31 7.11 99.48 0.71 -7.60 16 6 H -0.27 -9.00 7.11 99.48 0.71 -8.29 16 7 C -0.47 -19.37 7.04 23.33 0.16 -19.21 16 8 H 0.09 3.48 6.65 -2.91 -0.02 3.46 16 9 C 0.10 4.46 5.53 -21.12 -0.12 4.35 16 10 C -0.15 -6.66 8.61 22.45 0.19 -6.47 16 11 C -0.13 -5.35 9.94 22.06 0.22 -5.13 16 12 C -0.05 -2.28 7.31 22.54 0.16 -2.12 16 13 F -0.17 -7.00 17.26 44.97 0.78 -6.23 16 14 C -0.10 -3.79 9.48 22.50 0.21 -3.57 16 15 C -0.15 -5.73 5.50 -19.61 -0.11 -5.84 16 16 C -0.10 -3.60 4.92 -20.13 -0.10 -3.70 16 17 C 0.19 5.54 9.08 84.44 0.77 6.31 16 18 N -0.48 -13.26 5.27 -186.69 -0.98 -14.24 16 19 H 0.44 9.04 8.91 -92.71 -0.83 8.21 16 20 C 0.21 7.44 8.63 135.81 1.17 8.61 16 21 N -0.57 -21.03 11.17 -189.03 -2.11 -23.14 16 22 C 0.03 0.96 11.69 83.90 0.98 1.94 16 23 C -0.25 -8.26 10.99 22.48 0.25 -8.01 16 24 C -0.19 -6.83 6.41 -20.11 -0.13 -6.96 16 25 C 0.04 1.25 9.65 22.94 0.22 1.47 16 26 H 0.29 11.31 8.30 -92.71 -0.77 10.54 16 27 H 0.12 5.36 6.26 -2.91 -0.02 5.34 16 28 H 0.11 4.37 8.06 -2.91 -0.02 4.35 16 29 H 0.12 4.26 8.04 -2.91 -0.02 4.24 16 30 H 0.20 5.49 7.20 -2.91 -0.02 5.46 16 31 H 0.17 4.59 8.06 -2.91 -0.02 4.57 16 32 H 0.15 4.10 8.06 -2.91 -0.02 4.08 16 33 H 0.14 4.35 8.06 -2.91 -0.02 4.32 16 Total: -1.00 -53.77 293.14 4.63 -49.14 By element: Atomic # 1 Polarization: 30.23 SS G_CDS: 0.35 Total: 30.58 kcal Atomic # 6 Polarization: -40.20 SS G_CDS: 4.33 Total: -35.86 kcal Atomic # 7 Polarization: -68.47 SS G_CDS: -2.86 Total: -71.33 kcal Atomic # 9 Polarization: -7.00 SS G_CDS: 0.78 Total: -6.23 kcal Atomic # 14 Polarization: 31.66 SS G_CDS: 2.03 Total: 33.69 kcal Total: -53.77 4.63 -49.14 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240391821.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.288 kcal (2) G-P(sol) polarization free energy of solvation -53.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds