Wall clock time and date at job start Tue Mar 31 2020 05:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30861 * 1 3 3 Si 1.86801 * 119.99664 * 2 1 4 4 H 1.48504 * 109.47214 * 239.99867 * 3 2 1 5 5 H 1.48496 * 109.47289 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46912 * 120.00199 * 3 2 1 7 7 C 1.39901 * 120.00346 * 180.02562 * 2 1 3 8 8 H 1.07990 * 119.99974 * 162.95714 * 7 2 1 9 9 C 1.41341 * 119.99476 * 342.95851 * 7 2 1 10 10 C 1.40845 * 120.16019 * 334.62770 * 9 7 2 11 11 C 1.37560 * 120.01412 * 180.02562 * 10 9 7 12 12 C 1.38758 * 120.34543 * 0.02562 * 11 10 9 13 13 F 1.35096 * 119.84232 * 180.02562 * 12 11 10 14 14 C 1.39976 * 120.31718 * 359.97438 * 12 11 10 15 15 C 1.48450 * 120.01124 * 180.02562 * 14 12 11 16 16 C 1.38154 * 119.70152 * 129.97426 * 15 14 12 17 17 N 1.34100 * 122.08924 * 179.97438 * 16 15 14 18 18 H 0.97002 * 119.65492 * 180.02562 * 17 16 15 19 19 C 1.37062 * 120.68987 * 0.02562 * 17 16 15 20 20 N 1.32148 * 134.52365 * 179.97438 * 19 17 16 21 21 C 1.33336 * 110.89507 * 180.02562 * 20 19 17 22 22 C 1.35875 * 110.86920 * 0.02562 * 21 20 19 23 23 C 1.41278 * 106.48033 * 0.02562 * 22 21 20 24 24 C 1.39009 * 135.65808 * 179.97438 * 23 22 21 25 25 C 1.38628 * 119.97254 * 0.26939 * 14 12 11 26 26 H 0.96996 * 120.00166 * 0.02562 * 1 2 3 27 27 H 1.08003 * 119.99106 * 359.97438 * 10 9 7 28 28 H 1.08008 * 119.82870 * 180.02562 * 11 10 9 29 29 H 1.07997 * 118.95955 * 359.97438 * 16 15 14 30 30 H 1.08004 * 124.56919 * 179.97438 * 21 20 19 31 31 H 1.07997 * 126.76234 * 180.02562 * 22 21 20 32 32 H 1.07998 * 120.72105 * 0.25710 * 24 23 22 33 33 H 1.08004 * 120.16499 * 179.70564 * 25 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 3.0963 1.6965 -1.2125 5 1 1.2775 2.7465 0.0006 6 1 3.0963 1.6964 1.2125 7 6 2.0082 -1.2115 -0.0005 8 1 3.0525 -1.2319 -0.2747 9 6 1.3480 -2.4088 0.3577 10 6 0.2179 -2.3698 1.1974 11 6 -0.4220 -3.5370 1.5446 12 6 0.0400 -4.7571 1.0719 13 9 -0.5965 -5.8971 1.4189 14 6 1.1618 -4.8123 0.2366 15 6 1.6499 -6.1212 -0.2656 16 6 1.8974 -6.2878 -1.6145 17 7 2.3395 -7.4487 -2.1197 18 1 2.5020 -7.5264 -3.0728 19 6 2.5640 -8.5265 -1.3034 20 7 2.9849 -9.7640 -1.4973 21 6 3.0318 -10.4362 -0.3467 22 6 2.6324 -9.6521 0.6886 23 6 2.3113 -8.3920 0.1363 24 6 1.8524 -7.1771 0.6320 25 6 1.8198 -3.6446 -0.1175 26 1 -0.4850 0.8400 -0.0004 27 1 -0.1458 -1.4234 1.5695 28 1 -1.2886 -3.5036 2.1884 29 1 1.7296 -5.4567 -2.2835 30 1 3.3443 -11.4656 -0.2507 31 1 2.5723 -9.9361 1.7288 32 1 1.6625 -7.0481 1.6873 33 1 2.6885 -3.6841 -0.7580 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240393094.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:53 Heat of formation + Delta-G solvation = 49.223852 kcal Electronic energy + Delta-G solvation = -20385.141285 eV Core-core repulsion = 17097.624102 eV Total energy + Delta-G solvation = -3287.517183 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -47.66179 -41.10761 -38.21490 -37.29650 -34.43009 -33.30437 -30.59982 -29.84493 -28.52815 -27.67153 -25.29737 -23.92441 -22.74709 -21.22386 -20.98777 -19.94468 -17.75820 -17.10771 -16.72906 -16.25832 -16.13432 -15.48993 -14.98801 -14.75814 -14.57435 -14.30228 -13.97102 -13.17479 -12.96209 -12.63065 -12.24960 -12.11209 -12.07645 -11.91101 -11.55347 -11.52536 -11.27715 -10.99492 -10.59660 -10.35904 -10.13587 -9.74524 -9.33552 -9.22319 -8.17944 -7.70417 -7.56141 -7.21524 -7.01419 -4.60676 0.46299 1.56209 2.45022 2.54325 2.66169 2.94314 2.94981 3.00808 3.67165 3.74612 3.79267 4.29156 4.47716 4.79011 4.88675 5.15411 5.33773 5.36535 5.58361 5.61391 5.88862 5.96306 6.10787 6.21907 6.41935 6.55794 6.59198 6.66248 6.80034 6.89253 6.96569 7.12657 7.18356 7.38869 7.41241 7.62425 7.72228 7.91913 8.29899 8.33126 8.58880 8.61622 9.93457 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.028736 B = 0.004111 C = 0.003768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.158890 B = 6809.032075 C = 7429.142416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.076 3.924 3 Si 0.911 3.089 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.456 4.456 8 H 0.082 0.918 9 C 0.104 3.896 10 C -0.134 4.134 11 C -0.127 4.127 12 C -0.028 4.028 13 F -0.168 7.168 14 C -0.048 4.048 15 C -0.115 4.115 16 C 0.149 3.851 17 N -0.494 5.494 18 H 0.421 0.579 19 C 0.238 3.762 20 N -0.548 5.548 21 C 0.048 3.952 22 C -0.240 4.240 23 C -0.167 4.167 24 C 0.053 3.947 25 C -0.192 4.192 26 H 0.285 0.715 27 H 0.128 0.872 28 H 0.104 0.896 29 H 0.182 0.818 30 H 0.153 0.847 31 H 0.132 0.868 32 H 0.137 0.863 33 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.180 -5.155 -1.665 5.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.143 4.143 3 Si 0.735 3.265 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.485 4.485 8 H 0.100 0.900 9 C 0.101 3.899 10 C -0.153 4.153 11 C -0.146 4.146 12 C -0.048 4.048 13 F -0.147 7.147 14 C -0.050 4.050 15 C -0.121 4.121 16 C 0.009 3.991 17 N -0.086 5.086 18 H 0.258 0.742 19 C -0.009 4.009 20 N -0.269 5.269 21 C -0.097 4.097 22 C -0.263 4.263 23 C -0.175 4.175 24 C 0.029 3.971 25 C -0.212 4.212 26 H 0.096 0.904 27 H 0.146 0.854 28 H 0.123 0.877 29 H 0.199 0.801 30 H 0.170 0.830 31 H 0.150 0.850 32 H 0.155 0.845 33 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 2.250 -5.566 -2.580 6.534 hybrid contribution -0.031 0.928 0.467 1.039 sum 2.219 -4.638 -2.113 5.559 Atomic orbital electron populations 1.69783 1.07629 1.29894 1.34058 1.25938 0.94789 1.01569 0.92034 0.86305 0.80143 0.79853 0.80182 1.18866 1.20196 1.18637 1.19553 0.97973 0.90902 1.40065 0.90004 1.17553 0.91322 0.91973 0.89002 1.21310 0.98307 0.96456 0.99254 1.20661 1.00517 0.91657 1.01788 1.17235 0.97653 0.81420 1.08479 1.91304 1.81886 1.49759 1.91733 1.17906 0.96096 0.90498 1.00451 1.18293 1.07259 0.95547 0.91002 1.22333 0.93256 0.86866 0.96626 1.40284 1.48909 1.07899 1.11508 0.74197 1.20427 1.02665 0.89399 0.88363 1.69508 1.25742 1.01829 1.29840 1.22185 1.00729 0.98781 0.87961 1.21258 1.12304 0.93070 0.99639 1.20129 1.08704 0.95759 0.92928 1.21552 0.85972 0.89477 1.00103 1.20898 1.02983 0.91059 1.06248 0.90383 0.85444 0.87750 0.80113 0.82969 0.85008 0.84529 0.87718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -18.21 10.96 55.54 0.61 -17.60 16 2 C 0.08 1.69 5.15 -17.34 -0.09 1.60 16 3 Si 0.91 16.75 29.59 -169.99 -5.03 11.72 16 4 H -0.26 -4.81 7.11 56.52 0.40 -4.41 16 5 H -0.28 -5.01 7.11 56.52 0.40 -4.61 16 6 H -0.26 -4.83 7.11 56.52 0.40 -4.42 16 7 C -0.46 -10.58 9.04 -37.78 -0.34 -10.92 16 8 H 0.08 1.81 7.90 -52.49 -0.41 1.39 16 9 C 0.10 2.41 5.56 -106.86 -0.59 1.81 16 10 C -0.13 -3.07 8.68 -38.84 -0.34 -3.41 16 11 C -0.13 -2.72 9.99 -39.64 -0.40 -3.12 16 12 C -0.03 -0.58 7.18 -38.74 -0.28 -0.86 16 13 F -0.17 -3.45 15.85 2.25 0.04 -3.41 16 14 C -0.05 -0.94 5.45 -104.89 -0.57 -1.51 16 15 C -0.12 -1.93 5.30 -105.04 -0.56 -2.49 16 16 C 0.15 2.00 10.54 -16.59 -0.17 1.82 16 17 N -0.49 -6.33 5.28 -10.44 -0.06 -6.38 16 18 H 0.42 3.85 8.91 -40.82 -0.36 3.49 16 19 C 0.24 3.98 8.64 -153.98 -1.33 2.65 16 20 N -0.55 -9.68 11.17 -11.11 -0.12 -9.80 16 21 C 0.05 0.78 11.70 -17.75 -0.21 0.57 16 22 C -0.24 -3.91 10.98 -39.27 -0.43 -4.34 16 23 C -0.17 -2.91 6.41 -105.00 -0.67 -3.58 16 24 C 0.05 0.91 8.95 -38.62 -0.35 0.56 16 25 C -0.19 -3.95 9.17 -38.57 -0.35 -4.30 16 26 H 0.29 6.02 8.30 -40.82 -0.34 5.68 16 27 H 0.13 3.01 6.18 -52.48 -0.32 2.69 16 28 H 0.10 2.03 8.06 -52.48 -0.42 1.61 16 29 H 0.18 1.89 7.97 -52.49 -0.42 1.47 16 30 H 0.15 1.98 8.06 -52.48 -0.42 1.55 16 31 H 0.13 1.85 8.06 -52.49 -0.42 1.43 16 32 H 0.14 2.26 7.80 -52.49 -0.41 1.85 16 33 H 0.10 1.95 8.02 -52.48 -0.42 1.53 16 LS Contribution 296.18 15.07 4.46 4.46 Total: -1.00 -27.75 296.18 -9.54 -37.28 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -2.75 Total: 9.25 kcal Atomic # 6 Polarization: -18.83 SS G_CDS: -6.68 Total: -25.52 kcal Atomic # 7 Polarization: -34.21 SS G_CDS: 0.43 Total: -33.78 kcal Atomic # 9 Polarization: -3.45 SS G_CDS: 0.04 Total: -3.41 kcal Atomic # 14 Polarization: 16.75 SS G_CDS: -5.03 Total: 11.72 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -27.75 -9.54 -37.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240393094.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.507 kcal (2) G-P(sol) polarization free energy of solvation -27.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds