Wall clock time and date at job start Tue Mar 31 2020 05:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30835 * 1 3 3 Si 1.86797 * 119.99990 * 2 1 4 4 H 1.48507 * 109.47276 * 240.00006 * 3 2 1 5 5 H 1.48494 * 109.47215 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47275 * 119.99911 * 3 2 1 7 7 C 1.39928 * 120.00415 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00595 * 162.80491 * 7 2 1 9 9 C 1.41426 * 119.99456 * 342.81328 * 7 2 1 10 10 C 1.40752 * 120.17686 * 334.75172 * 9 7 2 11 11 C 1.37899 * 119.96380 * 180.02562 * 10 9 7 12 12 F 1.35100 * 119.84068 * 180.02562 * 11 10 9 13 13 C 1.38678 * 120.32036 * 0.02562 * 11 10 9 14 14 C 1.39636 * 120.35449 * 359.97438 * 13 11 10 15 15 C 1.48460 * 119.97997 * 179.97438 * 14 13 11 16 16 C 1.38152 * 119.69900 * 180.02562 * 15 14 13 17 17 N 1.34088 * 122.09482 * 179.97438 * 16 15 14 18 18 H 0.97003 * 119.66015 * 179.97438 * 17 16 15 19 19 C 1.37065 * 120.68182 * 359.95806 * 17 16 15 20 20 N 1.32151 * 134.51124 * 180.35970 * 19 17 16 21 21 C 1.33341 * 110.88914 * 180.10712 * 20 19 17 22 22 C 1.35878 * 110.87255 * 359.58569 * 21 20 19 23 23 C 1.41278 * 106.47624 * 0.23943 * 22 21 20 24 24 C 1.39007 * 135.66412 * 180.02562 * 23 22 21 25 25 C 1.38750 * 120.03024 * 0.25408 * 14 13 11 26 26 H 0.96994 * 120.00020 * 359.97438 * 1 2 3 27 27 H 1.08000 * 120.01703 * 0.02741 * 10 9 7 28 28 H 1.07997 * 119.82007 * 180.02562 * 13 11 10 29 29 H 1.08005 * 118.95111 * 359.97438 * 16 15 14 30 30 H 1.08003 * 124.56355 * 179.84507 * 21 20 19 31 31 H 1.07993 * 126.75888 * 180.26926 * 22 21 20 32 32 H 1.08000 * 120.72021 * 359.95049 * 24 23 22 33 33 H 1.07997 * 120.15954 * 179.74683 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0961 1.6964 -1.2125 5 1 1.2774 2.7464 -0.0006 6 1 3.0961 1.6964 1.2125 7 6 2.0081 -1.2118 0.0005 8 1 3.0519 -1.2328 -0.2759 9 6 1.3483 -2.4090 0.3630 10 6 0.2192 -2.3684 1.2024 11 6 -0.4204 -3.5386 1.5535 12 9 -1.5043 -3.4967 2.3590 13 6 0.0434 -4.7581 1.0838 14 6 1.1624 -4.8139 0.2503 15 6 1.6522 -6.1241 -0.2473 16 6 2.7601 -6.1725 -1.0712 17 7 3.2436 -7.3289 -1.5476 18 1 4.0237 -7.3219 -2.1241 19 6 2.6470 -8.5209 -1.2283 20 7 2.8858 -9.7858 -1.5272 21 6 1.9888 -10.5877 -0.9525 22 6 1.0970 -9.8703 -0.2202 23 6 1.4670 -8.5135 -0.3553 24 6 0.9876 -7.2998 0.1234 25 6 1.8200 -3.6460 -0.1083 26 1 -0.4850 0.8400 0.0004 27 1 -0.1460 -1.4214 1.5714 28 1 -0.4639 -5.6695 1.3635 29 1 3.2524 -5.2496 -1.3402 30 1 1.9755 -11.6631 -1.0521 31 1 0.2688 -10.2604 0.3526 32 1 0.1210 -7.2641 0.7671 33 1 2.6880 -3.6870 -0.7496 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240394989.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:00 Heat of formation + Delta-G solvation = 49.912629 kcal Electronic energy + Delta-G solvation = -20186.405562 eV Core-core repulsion = 16898.918247 eV Total energy + Delta-G solvation = -3287.487316 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -47.79189 -41.19195 -38.38641 -37.27925 -34.60492 -33.21920 -30.49451 -29.97662 -28.54784 -27.54391 -25.81060 -23.92450 -22.89395 -21.19247 -20.83983 -20.00821 -17.86187 -17.09248 -16.79426 -16.35855 -15.99410 -15.19533 -14.95543 -14.85176 -14.58050 -14.45297 -14.20279 -13.37301 -13.04053 -12.89843 -12.33103 -12.17012 -12.02817 -11.78021 -11.70747 -11.42620 -11.24166 -10.93431 -10.69752 -10.31772 -10.16881 -9.90038 -9.38482 -9.26234 -8.29187 -7.69977 -7.61883 -7.09597 -6.97414 -4.69403 0.39946 1.36391 2.48051 2.53526 2.73770 2.93773 2.94674 3.01981 3.63007 3.73131 3.78898 4.36450 4.38199 4.72370 4.81012 5.07679 5.26458 5.31881 5.45922 5.68547 5.79112 6.01711 6.10679 6.22578 6.29165 6.33547 6.53678 6.65667 6.77293 6.83719 6.95718 7.07526 7.25551 7.34464 7.41374 7.51184 7.65959 7.94101 8.28162 8.28733 8.56624 8.57203 9.91908 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.025531 B = 0.004121 C = 0.003587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.432630 B = 6792.077552 C = 7804.690219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.075 3.925 3 Si 0.912 3.088 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.456 4.456 8 H 0.084 0.916 9 C 0.132 3.868 10 C -0.195 4.195 11 C 0.112 3.888 12 F -0.164 7.164 13 C -0.267 4.267 14 C 0.008 3.992 15 C -0.113 4.113 16 C 0.143 3.857 17 N -0.491 5.491 18 H 0.422 0.578 19 C 0.237 3.763 20 N -0.548 5.548 21 C 0.050 3.950 22 C -0.241 4.241 23 C -0.166 4.166 24 C 0.040 3.960 25 C -0.224 4.224 26 H 0.286 0.714 27 H 0.130 0.870 28 H 0.105 0.895 29 H 0.185 0.815 30 H 0.153 0.847 31 H 0.132 0.868 32 H 0.141 0.859 33 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.851 -6.056 -1.416 7.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.145 4.145 3 Si 0.736 3.264 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.186 1.186 7 C -0.485 4.485 8 H 0.102 0.898 9 C 0.129 3.871 10 C -0.215 4.215 11 C 0.093 3.907 12 F -0.143 7.143 13 C -0.287 4.287 14 C 0.007 3.993 15 C -0.119 4.119 16 C 0.003 3.997 17 N -0.083 5.083 18 H 0.259 0.741 19 C -0.010 4.010 20 N -0.269 5.269 21 C -0.095 4.095 22 C -0.264 4.264 23 C -0.174 4.174 24 C 0.016 3.984 25 C -0.244 4.244 26 H 0.097 0.903 27 H 0.148 0.852 28 H 0.123 0.877 29 H 0.202 0.798 30 H 0.171 0.829 31 H 0.150 0.850 32 H 0.158 0.842 33 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 4.374 -6.366 -2.024 7.985 hybrid contribution -0.350 1.049 0.383 1.170 sum 4.024 -5.317 -1.641 6.867 Atomic orbital electron populations 1.69787 1.07727 1.30053 1.33093 1.25980 0.94791 1.01706 0.91979 0.86287 0.80146 0.79778 0.80171 1.18804 1.20144 1.18579 1.19574 0.98054 0.90867 1.39975 0.89768 1.17232 0.90064 0.92077 0.87709 1.21384 1.00812 0.96077 1.03223 1.17525 0.85231 0.94939 0.93051 1.91354 1.53540 1.97552 1.71890 1.20194 1.02852 0.95438 1.10195 1.17631 0.95190 0.89355 0.97138 1.18394 0.96871 0.94343 1.02255 1.22398 0.95440 0.88004 0.93900 1.40298 1.26031 1.03478 1.38505 0.74119 1.20455 0.94117 0.87165 0.99218 1.69522 1.29949 0.97654 1.29754 1.22207 0.92384 0.98306 0.96577 1.21264 1.04857 0.91142 1.09183 1.20144 0.98781 0.94627 1.03800 1.21595 0.95602 0.89791 0.91406 1.20961 1.03974 0.91816 1.07630 0.90251 0.85191 0.87722 0.79835 0.82937 0.84966 0.84177 0.88086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.59 10.96 55.55 0.61 -17.98 16 2 C 0.08 1.70 5.14 -17.34 -0.09 1.61 16 3 Si 0.91 16.81 29.59 -169.99 -5.03 11.78 16 4 H -0.26 -4.77 7.11 56.52 0.40 -4.36 16 5 H -0.28 -5.04 7.11 56.52 0.40 -4.64 16 6 H -0.26 -4.80 7.11 56.52 0.40 -4.40 16 7 C -0.46 -10.59 9.05 -37.74 -0.34 -10.93 16 8 H 0.08 1.82 7.90 -52.49 -0.41 1.40 16 9 C 0.13 3.08 5.56 -106.87 -0.59 2.49 16 10 C -0.19 -4.69 8.66 -38.76 -0.34 -5.03 16 11 C 0.11 2.53 7.28 -39.54 -0.29 2.24 16 12 F -0.16 -3.65 17.26 2.25 0.04 -3.61 16 13 C -0.27 -5.42 9.41 -38.90 -0.37 -5.79 16 14 C 0.01 0.15 5.87 -104.97 -0.62 -0.47 16 15 C -0.11 -1.78 5.86 -105.04 -0.62 -2.40 16 16 C 0.14 1.80 10.53 -16.60 -0.17 1.62 16 17 N -0.49 -5.95 5.28 -10.44 -0.06 -6.00 16 18 H 0.42 3.59 8.91 -40.82 -0.36 3.23 16 19 C 0.24 3.79 8.64 -153.97 -1.33 2.46 16 20 N -0.55 -9.33 11.17 -11.11 -0.12 -9.45 16 21 C 0.05 0.78 11.70 -17.74 -0.21 0.57 16 22 C -0.24 -3.74 10.98 -39.27 -0.43 -4.17 16 23 C -0.17 -2.72 6.41 -105.00 -0.67 -3.39 16 24 C 0.04 0.63 9.53 -38.62 -0.37 0.26 16 25 C -0.22 -4.51 9.15 -38.53 -0.35 -4.86 16 26 H 0.29 6.21 8.30 -40.82 -0.34 5.87 16 27 H 0.13 3.29 6.18 -52.49 -0.32 2.97 16 28 H 0.10 1.90 6.17 -52.49 -0.32 1.58 16 29 H 0.18 1.80 6.04 -52.48 -0.32 1.49 16 30 H 0.15 1.90 8.06 -52.48 -0.42 1.48 16 31 H 0.13 1.75 8.06 -52.49 -0.42 1.32 16 32 H 0.14 2.04 6.21 -52.49 -0.33 1.71 16 33 H 0.10 1.72 6.11 -52.49 -0.32 1.40 16 LS Contribution 291.27 15.07 4.39 4.39 Total: -1.00 -28.29 291.27 -9.33 -37.61 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -2.37 Total: 9.04 kcal Atomic # 6 Polarization: -19.00 SS G_CDS: -6.78 Total: -25.78 kcal Atomic # 7 Polarization: -33.86 SS G_CDS: 0.43 Total: -33.43 kcal Atomic # 9 Polarization: -3.65 SS G_CDS: 0.04 Total: -3.61 kcal Atomic # 14 Polarization: 16.81 SS G_CDS: -5.03 Total: 11.78 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -28.29 -9.33 -37.61 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240394989.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.524 kcal (2) G-P(sol) polarization free energy of solvation -28.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds