Wall clock time and date at job start Tue Mar 31 2020 05:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30835 * 1 3 3 Si 1.86797 * 119.99990 * 2 1 4 4 H 1.48507 * 109.47276 * 240.00006 * 3 2 1 5 5 H 1.48494 * 109.47215 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47275 * 119.99911 * 3 2 1 7 7 C 1.39928 * 120.00415 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00595 * 162.80491 * 7 2 1 9 9 C 1.41426 * 119.99456 * 342.81328 * 7 2 1 10 10 C 1.40752 * 120.17686 * 334.75172 * 9 7 2 11 11 C 1.37899 * 119.96380 * 180.02562 * 10 9 7 12 12 F 1.35100 * 119.84068 * 180.02562 * 11 10 9 13 13 C 1.38678 * 120.32036 * 0.02562 * 11 10 9 14 14 C 1.39636 * 120.35449 * 359.97438 * 13 11 10 15 15 C 1.48460 * 119.97997 * 179.97438 * 14 13 11 16 16 C 1.38152 * 119.69900 * 180.02562 * 15 14 13 17 17 N 1.34088 * 122.09482 * 179.97438 * 16 15 14 18 18 H 0.97003 * 119.66015 * 179.97438 * 17 16 15 19 19 C 1.37065 * 120.68182 * 359.95806 * 17 16 15 20 20 N 1.32151 * 134.51124 * 180.35970 * 19 17 16 21 21 C 1.33341 * 110.88914 * 180.10712 * 20 19 17 22 22 C 1.35878 * 110.87255 * 359.58569 * 21 20 19 23 23 C 1.41278 * 106.47624 * 0.23943 * 22 21 20 24 24 C 1.39007 * 135.66412 * 180.02562 * 23 22 21 25 25 C 1.38750 * 120.03024 * 0.25408 * 14 13 11 26 26 H 0.96994 * 120.00020 * 359.97438 * 1 2 3 27 27 H 1.08000 * 120.01703 * 0.02741 * 10 9 7 28 28 H 1.07997 * 119.82007 * 180.02562 * 13 11 10 29 29 H 1.08005 * 118.95111 * 359.97438 * 16 15 14 30 30 H 1.08003 * 124.56355 * 179.84507 * 21 20 19 31 31 H 1.07993 * 126.75888 * 180.26926 * 22 21 20 32 32 H 1.08000 * 120.72021 * 359.95049 * 24 23 22 33 33 H 1.07997 * 120.15954 * 179.74683 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0961 1.6964 -1.2125 5 1 1.2774 2.7464 -0.0006 6 1 3.0961 1.6964 1.2125 7 6 2.0081 -1.2118 0.0005 8 1 3.0519 -1.2328 -0.2759 9 6 1.3483 -2.4090 0.3630 10 6 0.2192 -2.3684 1.2024 11 6 -0.4204 -3.5386 1.5535 12 9 -1.5043 -3.4967 2.3590 13 6 0.0434 -4.7581 1.0838 14 6 1.1624 -4.8139 0.2503 15 6 1.6522 -6.1241 -0.2473 16 6 2.7601 -6.1725 -1.0712 17 7 3.2436 -7.3289 -1.5476 18 1 4.0237 -7.3219 -2.1241 19 6 2.6470 -8.5209 -1.2283 20 7 2.8858 -9.7858 -1.5272 21 6 1.9888 -10.5877 -0.9525 22 6 1.0970 -9.8703 -0.2202 23 6 1.4670 -8.5135 -0.3553 24 6 0.9876 -7.2998 0.1234 25 6 1.8200 -3.6460 -0.1083 26 1 -0.4850 0.8400 0.0004 27 1 -0.1460 -1.4214 1.5714 28 1 -0.4639 -5.6695 1.3635 29 1 3.2524 -5.2496 -1.3402 30 1 1.9755 -11.6631 -1.0521 31 1 0.2688 -10.2604 0.3526 32 1 0.1210 -7.2641 0.7671 33 1 2.6880 -3.6870 -0.7496 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240394989.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:00 Heat of formation + Delta-G solvation = 36.234680 kcal Electronic energy + Delta-G solvation = -20186.998683 eV Core-core repulsion = 16898.918247 eV Total energy + Delta-G solvation = -3288.080436 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.55568 -42.33725 -39.75377 -38.64921 -36.07326 -34.65495 -31.88902 -31.62083 -29.72504 -28.93317 -27.44660 -25.15059 -24.25126 -22.55166 -22.37138 -21.36095 -19.35476 -18.36854 -18.04213 -17.67025 -17.52280 -16.63644 -16.39168 -16.26546 -16.22401 -16.04891 -15.56026 -14.78009 -14.50886 -14.08013 -13.82046 -13.61398 -13.41071 -13.16895 -13.04566 -12.80361 -12.71246 -12.41817 -12.15384 -11.89787 -11.63392 -11.51747 -11.00779 -10.47324 -9.74940 -9.37000 -8.81745 -8.68751 -8.41847 -6.43005 -0.71352 0.07137 0.81732 1.21942 1.43585 1.48625 1.53658 1.57278 2.20477 2.42915 2.50646 2.79662 3.32154 3.44701 3.62920 3.74240 3.87473 3.94896 4.15736 4.34020 4.49856 4.72327 4.78313 4.87843 4.93977 5.04385 5.10517 5.21495 5.31791 5.37350 5.64809 5.74879 5.77641 5.86212 5.94340 5.97549 6.22836 6.25395 6.58577 6.85090 6.89942 7.11873 8.28274 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.025531 B = 0.004121 C = 0.003587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.432630 B = 6792.077552 C = 7804.690219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.035 3.965 3 Si 0.981 3.019 4 H -0.252 1.252 5 H -0.277 1.277 6 H -0.260 1.260 7 C -0.483 4.483 8 H 0.098 0.902 9 C 0.107 3.893 10 C -0.229 4.229 11 C 0.096 3.904 12 F -0.169 7.169 13 C -0.271 4.271 14 C 0.023 3.977 15 C -0.141 4.141 16 C 0.183 3.817 17 N -0.471 5.471 18 H 0.442 0.558 19 C 0.219 3.781 20 N -0.567 5.567 21 C 0.031 3.969 22 C -0.247 4.247 23 C -0.194 4.194 24 C 0.045 3.955 25 C -0.223 4.223 26 H 0.289 0.711 27 H 0.105 0.895 28 H 0.124 0.876 29 H 0.222 0.778 30 H 0.176 0.824 31 H 0.148 0.852 32 H 0.145 0.855 33 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.793 -6.640 -2.551 9.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.181 4.181 3 Si 0.802 3.198 4 H -0.176 1.176 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.512 4.512 8 H 0.116 0.884 9 C 0.105 3.895 10 C -0.249 4.249 11 C 0.077 3.923 12 F -0.148 7.148 13 C -0.291 4.291 14 C 0.022 3.978 15 C -0.147 4.147 16 C 0.040 3.960 17 N -0.064 5.064 18 H 0.283 0.717 19 C -0.028 4.028 20 N -0.288 5.288 21 C -0.113 4.113 22 C -0.270 4.270 23 C -0.202 4.202 24 C 0.021 3.979 25 C -0.242 4.242 26 H 0.100 0.900 27 H 0.123 0.877 28 H 0.142 0.858 29 H 0.238 0.762 30 H 0.193 0.807 31 H 0.166 0.834 32 H 0.162 0.838 33 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 6.335 -6.995 -3.175 9.957 hybrid contribution -0.946 1.091 0.717 1.612 sum 5.390 -5.904 -2.458 8.363 Atomic orbital electron populations 1.69877 1.09337 1.30937 1.34506 1.26828 0.95326 1.04905 0.91079 0.85245 0.78707 0.75478 0.80359 1.17606 1.20164 1.18471 1.19931 0.98788 0.91514 1.40932 0.88439 1.17591 0.90167 0.93792 0.87984 1.21303 1.02617 0.95612 1.05403 1.17776 0.85372 0.95628 0.93551 1.91330 1.53750 1.97624 1.72057 1.20496 1.03441 0.95136 1.10059 1.17800 0.93926 0.90620 0.95479 1.18173 0.98998 0.92670 1.04827 1.22799 0.93412 0.89040 0.90725 1.40331 1.26043 1.02298 1.37756 0.71688 1.20647 0.94631 0.87803 0.99719 1.69499 1.30636 0.98341 1.30310 1.22641 0.92347 0.99510 0.96773 1.21576 1.05223 0.91109 1.09042 1.20328 0.99768 0.95080 1.05038 1.21639 0.95560 0.89701 0.91007 1.21301 1.04761 0.90809 1.07369 0.90028 0.87686 0.85814 0.76223 0.80677 0.83385 0.83771 0.84546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -40.27 10.96 21.82 0.24 -40.03 16 2 C 0.03 1.58 5.14 85.25 0.44 2.02 16 3 Si 0.98 34.22 29.59 68.60 2.03 36.25 16 4 H -0.25 -8.27 7.11 99.48 0.71 -7.56 16 5 H -0.28 -9.52 7.11 99.48 0.71 -8.82 16 6 H -0.26 -8.94 7.11 99.48 0.71 -8.23 16 7 C -0.48 -22.33 9.05 23.46 0.21 -22.12 16 8 H 0.10 4.07 7.90 -2.91 -0.02 4.05 16 9 C 0.11 5.03 5.56 -21.32 -0.12 4.91 16 10 C -0.23 -11.42 8.66 22.80 0.20 -11.23 16 11 C 0.10 4.43 7.28 22.29 0.16 4.59 16 12 F -0.17 -7.71 17.26 44.97 0.78 -6.93 16 13 C -0.27 -10.85 9.41 22.71 0.21 -10.64 16 14 C 0.02 0.82 5.87 -20.09 -0.12 0.70 16 15 C -0.14 -4.03 5.86 -20.13 -0.12 -4.15 16 16 C 0.18 3.81 10.53 84.33 0.89 4.70 16 17 N -0.47 -9.60 5.28 -186.94 -0.99 -10.58 16 18 H 0.44 5.62 8.91 -92.71 -0.83 4.79 16 19 C 0.22 6.43 8.64 135.81 1.17 7.60 16 20 N -0.57 -18.21 11.17 -189.07 -2.11 -20.33 16 21 C 0.03 0.93 11.70 83.92 0.98 1.91 16 22 C -0.25 -7.27 10.98 22.47 0.25 -7.02 16 23 C -0.19 -6.00 6.41 -20.11 -0.13 -6.13 16 24 C 0.04 1.32 9.53 22.89 0.22 1.54 16 25 C -0.22 -8.50 9.15 22.95 0.21 -8.29 16 26 H 0.29 12.99 8.30 -92.71 -0.77 12.23 16 27 H 0.11 5.66 6.18 -2.91 -0.02 5.64 16 28 H 0.12 4.37 6.17 -2.91 -0.02 4.35 16 29 H 0.22 2.99 6.04 -2.91 -0.02 2.98 16 30 H 0.18 4.05 8.06 -2.91 -0.02 4.03 16 31 H 0.15 3.68 8.06 -2.91 -0.02 3.66 16 32 H 0.14 3.97 6.21 -2.91 -0.02 3.96 16 33 H 0.14 4.07 6.11 -2.91 -0.02 4.05 16 Total: -1.00 -62.88 291.27 4.77 -58.11 By element: Atomic # 1 Polarization: 24.75 SS G_CDS: 0.37 Total: 25.12 kcal Atomic # 6 Polarization: -46.07 SS G_CDS: 4.46 Total: -41.61 kcal Atomic # 7 Polarization: -68.08 SS G_CDS: -2.86 Total: -70.94 kcal Atomic # 9 Polarization: -7.71 SS G_CDS: 0.78 Total: -6.93 kcal Atomic # 14 Polarization: 34.22 SS G_CDS: 2.03 Total: 36.25 kcal Total: -62.88 4.77 -58.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240394989.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.348 kcal (2) G-P(sol) polarization free energy of solvation -62.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds