Wall clock time and date at job start Tue Mar 31 2020 05:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30848 * 1 3 3 Si 1.86801 * 119.99785 * 2 1 4 4 H 1.48508 * 109.47277 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47581 * 299.99791 * 3 2 1 6 6 H 1.48501 * 109.47273 * 60.00395 * 3 2 1 7 7 C 1.39931 * 120.00307 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99861 * 163.06014 * 7 2 1 9 9 C 1.41321 * 119.99891 * 343.06154 * 7 2 1 10 10 C 1.40780 * 120.20260 * 334.56457 * 9 7 2 11 11 C 1.37642 * 120.04705 * 180.02562 * 10 9 7 12 12 C 1.38473 * 120.46494 * 359.70108 * 11 10 9 13 13 C 1.39665 * 120.41060 * 0.55558 * 12 11 10 14 14 C 1.48140 * 120.02688 * 179.74087 * 13 12 11 15 15 C 1.39511 * 121.09930 * 64.70891 * 14 13 12 16 16 C 1.38308 * 119.24428 * 180.02562 * 15 14 13 17 17 N 1.31694 * 121.73547 * 359.61531 * 16 15 14 18 18 C 1.32687 * 121.96502 * 0.60690 * 17 16 15 19 19 N 1.37451 * 133.13669 * 179.25161 * 18 17 16 20 20 H 0.97006 * 125.00093 * 0.02562 * 19 18 17 21 21 C 1.36901 * 109.99310 * 180.02562 * 19 18 17 22 22 C 1.34337 * 109.86430 * 359.97438 * 21 19 18 23 23 C 1.40690 * 121.10237 * 244.72174 * 14 13 12 24 24 C 1.39228 * 119.94111 * 359.46989 * 13 12 11 25 25 F 1.35093 * 120.22924 * 180.27175 * 24 13 12 26 26 H 0.96998 * 119.99733 * 359.97438 * 1 2 3 27 27 H 1.08000 * 119.97558 * 359.97438 * 10 9 7 28 28 H 1.07995 * 119.76907 * 179.97438 * 11 10 9 29 29 H 1.07995 * 119.79118 * 180.27748 * 12 11 10 30 30 H 1.07995 * 120.37556 * 0.03440 * 15 14 13 31 31 H 1.08000 * 119.13073 * 180.02562 * 16 15 14 32 32 H 1.07999 * 125.06654 * 179.97438 * 21 19 18 33 33 H 1.08002 * 126.56508 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2424 1.6178 0.0000 4 1 3.7025 1.3465 0.0006 5 1 1.8838 2.3965 -1.2125 6 1 1.8837 2.3965 1.2125 7 6 2.0082 -1.2118 -0.0005 8 1 3.0530 -1.2319 -0.2731 9 6 1.3476 -2.4093 0.3555 10 6 0.2175 -2.3723 1.1942 11 6 -0.4231 -3.5407 1.5393 12 6 0.0320 -4.7583 1.0621 13 6 1.1545 -4.8179 0.2333 14 6 1.6374 -6.1257 -0.2678 15 6 0.8592 -6.8993 -1.1292 16 6 1.3476 -8.1148 -1.5731 17 7 2.5329 -8.5593 -1.2101 18 6 3.3193 -7.8738 -0.3903 19 7 4.5640 -8.1168 0.1398 20 1 5.0968 -8.9091 -0.0314 21 6 4.9411 -7.0758 0.9451 22 6 3.9762 -6.1414 0.9651 23 6 2.8960 -6.6287 0.1096 24 6 1.8158 -3.6466 -0.1263 25 9 2.8989 -3.6970 -0.9322 26 1 -0.4850 0.8401 0.0004 27 1 -0.1466 -1.4266 1.5676 28 1 -1.2894 -3.5071 2.1833 29 1 -0.4816 -5.6679 1.3362 30 1 -0.1135 -6.5530 -1.4459 31 1 0.7437 -8.7120 -2.2403 32 1 5.8750 -7.0150 1.4841 33 1 3.9930 -5.2107 1.5128 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240412702.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:45 Heat of formation + Delta-G solvation = 39.381630 kcal Electronic energy + Delta-G solvation = -20895.215772 eV Core-core repulsion = 17607.271798 eV Total energy + Delta-G solvation = -3287.943974 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -47.24447 -41.12118 -37.79362 -37.03967 -34.17047 -32.68833 -30.07023 -29.59269 -29.28437 -27.98453 -25.39007 -23.50104 -22.23905 -21.09275 -20.73655 -20.06719 -18.08919 -17.02193 -16.22170 -16.03409 -15.37610 -15.35427 -14.74399 -14.56224 -14.31452 -13.94416 -13.88934 -12.96645 -12.90198 -12.77420 -12.54831 -12.02525 -11.84448 -11.72034 -11.66956 -11.27295 -11.14574 -10.83600 -10.49464 -9.98003 -9.90722 -9.58083 -9.30472 -9.04648 -8.13251 -7.83651 -7.53237 -7.29934 -6.87709 -4.48098 1.27428 1.74213 2.59250 2.62979 3.00525 3.02951 3.03717 3.08439 3.11007 3.86278 4.25097 4.45902 4.81314 5.00704 5.08934 5.28591 5.45714 5.53745 5.67028 5.83201 5.98791 6.10944 6.15822 6.24347 6.49886 6.66627 6.72335 6.84371 6.85773 7.03797 7.09346 7.27231 7.40901 7.52036 7.54435 7.82907 7.89906 7.99931 8.32498 8.44968 8.66612 8.74695 10.05747 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.024407 B = 0.005105 C = 0.004642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.919254 B = 5483.660727 C = 6030.979845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.076 3.924 3 Si 0.912 3.088 4 H -0.259 1.259 5 H -0.273 1.273 6 H -0.270 1.270 7 C -0.453 4.453 8 H 0.083 0.917 9 C 0.084 3.916 10 C -0.139 4.139 11 C -0.112 4.112 12 C -0.195 4.195 13 C -0.072 4.072 14 C 0.079 3.921 15 C -0.200 4.200 16 C 0.136 3.864 17 N -0.516 5.516 18 C 0.282 3.718 19 N -0.587 5.587 20 H 0.414 0.586 21 C 0.040 3.960 22 C -0.169 4.169 23 C -0.140 4.140 24 C 0.000 4.000 25 F -0.155 7.155 26 H 0.283 0.717 27 H 0.126 0.874 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.136 0.864 31 H 0.157 0.843 32 H 0.175 0.825 33 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.835 -8.822 1.752 9.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.142 4.142 3 Si 0.736 3.264 4 H -0.182 1.182 5 H -0.198 1.198 6 H -0.195 1.195 7 C -0.482 4.482 8 H 0.101 0.899 9 C 0.081 3.919 10 C -0.158 4.158 11 C -0.131 4.131 12 C -0.215 4.215 13 C -0.073 4.073 14 C 0.070 3.930 15 C -0.222 4.222 16 C -0.028 4.028 17 N -0.230 5.230 18 C 0.049 3.951 19 N -0.195 5.195 20 H 0.251 0.749 21 C -0.084 4.084 22 C -0.194 4.194 23 C -0.146 4.146 24 C -0.020 4.020 25 F -0.134 7.134 26 H 0.094 0.906 27 H 0.144 0.856 28 H 0.116 0.884 29 H 0.117 0.883 30 H 0.154 0.846 31 H 0.174 0.826 32 H 0.192 0.808 33 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 4.128 -9.536 1.420 10.487 hybrid contribution 0.386 1.215 0.003 1.275 sum 4.514 -8.321 1.423 9.573 Atomic orbital electron populations 1.69812 1.07606 1.29499 1.34608 1.25901 0.94772 1.01471 0.92058 0.86191 0.81070 0.80483 0.78669 1.18235 1.19825 1.19540 1.19530 0.98127 0.90742 1.39787 0.89868 1.17556 0.92783 0.90656 0.90920 1.21257 0.97928 0.97332 0.99308 1.20642 0.99244 0.92769 1.00419 1.20205 0.98730 0.96893 1.05643 1.18177 0.97970 0.89133 1.01994 1.18729 0.90393 0.92599 0.91264 1.21971 1.02133 0.96468 1.01640 1.22226 0.90079 0.93684 0.96801 1.66385 1.05804 1.35952 1.14863 1.18319 0.87889 0.92440 0.96445 1.41438 1.14918 1.20595 1.42525 0.74889 1.21772 1.00482 0.88257 0.97913 1.21713 0.93166 1.00700 1.03842 1.19843 0.95987 0.96071 1.02733 1.17797 0.90249 0.93562 1.00394 1.91295 1.53139 1.97220 1.71781 0.90626 0.85583 0.88417 0.88337 0.84580 0.82595 0.80829 0.83318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.63 10.96 55.55 0.61 -19.02 16 2 C 0.08 1.86 5.15 -17.34 -0.09 1.77 16 3 Si 0.91 18.26 29.59 -169.99 -5.03 13.23 16 4 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 5 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 6 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 7 C -0.45 -11.90 8.77 -37.78 -0.33 -12.23 16 8 H 0.08 2.18 7.74 -52.49 -0.41 1.77 16 9 C 0.08 2.20 5.57 -106.80 -0.59 1.60 16 10 C -0.14 -3.41 8.68 -38.84 -0.34 -3.75 16 11 C -0.11 -2.46 10.00 -39.71 -0.40 -2.86 16 12 C -0.20 -4.18 9.75 -38.96 -0.38 -4.56 16 13 C -0.07 -1.62 5.33 -104.93 -0.56 -2.18 16 14 C 0.08 1.61 5.03 -104.43 -0.53 1.08 16 15 C -0.20 -3.53 9.85 -39.08 -0.38 -3.91 16 16 C 0.14 2.15 11.13 -17.58 -0.20 1.95 16 17 N -0.52 -8.91 10.37 -12.35 -0.13 -9.03 16 18 C 0.28 4.96 8.43 -155.67 -1.31 3.64 16 19 N -0.59 -8.02 6.05 -12.14 -0.07 -8.10 16 20 H 0.41 4.22 8.96 -40.82 -0.37 3.85 16 21 C 0.04 0.53 11.83 -16.66 -0.20 0.33 16 22 C -0.17 -2.90 11.00 -37.78 -0.42 -3.32 16 23 C -0.14 -2.71 6.05 -104.87 -0.63 -3.34 16 24 C 0.00 0.01 7.26 -38.25 -0.28 -0.27 16 25 F -0.16 -3.97 16.16 2.25 0.04 -3.94 16 26 H 0.28 6.33 8.30 -40.82 -0.34 5.99 16 27 H 0.13 3.16 6.18 -52.49 -0.32 2.83 16 28 H 0.10 1.87 8.06 -52.49 -0.42 1.44 16 29 H 0.10 1.89 8.06 -52.49 -0.42 1.46 16 30 H 0.14 2.17 8.06 -52.49 -0.42 1.74 16 31 H 0.16 1.83 8.06 -52.49 -0.42 1.41 16 32 H 0.17 1.49 8.06 -52.49 -0.42 1.07 16 33 H 0.15 2.59 8.06 -52.49 -0.42 2.17 16 LS Contribution 297.81 15.07 4.49 4.49 Total: -1.00 -29.79 297.81 -9.50 -39.29 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -2.77 Total: 9.11 kcal Atomic # 6 Polarization: -19.39 SS G_CDS: -6.63 Total: -26.02 kcal Atomic # 7 Polarization: -36.56 SS G_CDS: 0.41 Total: -36.15 kcal Atomic # 9 Polarization: -3.97 SS G_CDS: 0.04 Total: -3.94 kcal Atomic # 14 Polarization: 18.26 SS G_CDS: -5.03 Total: 13.23 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -29.79 -9.50 -39.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240412702.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.668 kcal (2) G-P(sol) polarization free energy of solvation -29.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds