Wall clock time and date at job start Tue Mar 31 2020 05:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30662 * 1 3 3 Si 1.86808 * 119.99769 * 2 1 4 4 H 1.48501 * 109.46711 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47030 * 299.99619 * 3 2 1 6 6 H 1.48497 * 109.47180 * 59.99888 * 3 2 1 7 7 C 1.40210 * 120.00411 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00303 * 197.93515 * 7 2 1 9 9 C 1.40916 * 119.99402 * 17.94212 * 7 2 1 10 10 C 1.41067 * 120.07573 * 204.71150 * 9 7 2 11 11 C 1.36116 * 119.95565 * 179.75789 * 10 9 7 12 12 C 1.40210 * 120.12659 * 0.51462 * 11 10 9 13 13 C 1.47382 * 119.91783 * 179.75819 * 12 11 10 14 14 C 1.40614 * 120.76973 * 64.71163 * 13 12 11 15 15 C 1.35636 * 120.19923 * 180.02562 * 14 13 12 16 16 N 1.34598 * 121.95213 * 359.97438 * 15 14 13 17 17 H 0.96994 * 119.49349 * 180.02562 * 16 15 14 18 18 C 1.37337 * 121.01209 * 0.02562 * 16 15 14 19 19 N 1.32392 * 133.51972 * 180.02562 * 18 16 15 20 20 C 1.33313 * 110.57204 * 179.97438 * 19 18 16 21 21 C 1.36247 * 109.74203 * 0.02562 * 20 19 18 22 22 C 1.40787 * 106.35037 * 359.97438 * 21 20 19 23 23 C 1.40390 * 120.15593 * 359.48198 * 12 11 10 24 24 F 1.35101 * 119.97175 * 180.27597 * 23 12 11 25 25 C 1.36458 * 120.04523 * 0.25807 * 23 12 11 26 26 H 0.96999 * 120.00533 * 0.02562 * 1 2 3 27 27 H 1.08002 * 120.02071 * 0.03556 * 10 9 7 28 28 H 1.08002 * 119.93415 * 180.27198 * 11 10 9 29 29 H 1.08000 * 119.89851 * 0.03577 * 14 13 12 30 30 H 1.08001 * 119.02389 * 180.28092 * 15 14 13 31 31 H 1.08001 * 125.12905 * 179.97438 * 20 19 18 32 32 H 1.08000 * 126.82490 * 180.02562 * 21 20 19 33 33 H 1.08002 * 120.06207 * 179.97438 * 25 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 3.7006 1.3464 0.0006 5 1 1.8819 2.3965 -1.2126 6 1 1.8818 2.3965 1.2125 7 6 2.0078 -1.2142 0.0005 8 1 3.0484 -1.2368 0.2886 9 6 1.3545 -2.4050 -0.3749 10 6 1.8277 -3.6488 0.0933 11 6 1.1919 -4.7972 -0.2668 12 6 0.0737 -4.7473 -1.1113 13 6 -0.6080 -5.9940 -1.5027 14 6 -1.2572 -6.7907 -0.5430 15 6 -1.8805 -7.9362 -0.9159 16 7 -1.9037 -8.3501 -2.1965 17 1 -2.3605 -9.1751 -2.4235 18 6 -1.2905 -7.6222 -3.1866 19 7 -1.1608 -7.7891 -4.4935 20 6 -0.4630 -6.7862 -5.0269 21 6 -0.1039 -5.9055 -4.0514 22 6 -0.6235 -6.4154 -2.8463 23 6 -0.4015 -3.5123 -1.5802 24 9 -1.4826 -3.4683 -2.3892 25 6 0.2276 -2.3565 -1.2190 26 1 -0.4851 0.8400 -0.0004 27 1 2.6912 -3.6894 0.7408 28 1 1.5518 -5.7488 0.0954 29 1 -1.2596 -6.4896 0.4942 30 1 -2.3772 -8.5313 -0.1638 31 1 -0.2185 -6.6873 -6.0742 32 1 0.4653 -4.9964 -4.1776 33 1 -0.1375 -1.4063 -1.5799 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240413013.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:53 Heat of formation + Delta-G solvation = 54.907030 kcal Electronic energy + Delta-G solvation = -20765.409822 eV Core-core repulsion = 17478.139080 eV Total energy + Delta-G solvation = -3287.270742 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -47.70386 -41.08576 -37.81177 -37.50055 -34.59334 -33.13086 -29.94212 -29.33579 -28.89861 -28.06666 -25.99041 -23.20598 -22.14569 -21.19946 -20.80569 -19.94545 -17.81646 -17.18962 -16.72370 -16.07769 -15.86904 -15.08722 -14.95000 -14.82010 -14.49398 -14.29998 -13.53322 -13.26075 -12.86408 -12.75393 -12.31296 -11.98016 -11.92616 -11.77220 -11.52813 -11.30390 -11.11252 -10.89488 -10.64697 -10.18295 -9.97726 -9.73790 -9.41933 -8.96795 -7.84058 -7.66568 -7.54313 -7.13629 -7.04174 -4.69226 0.56631 1.95551 2.41589 2.76767 2.78450 2.91806 2.95857 2.98454 3.69778 3.96062 4.02666 4.26437 4.53456 4.96648 5.23107 5.30880 5.44941 5.53742 5.56312 5.83890 6.03157 6.19043 6.45201 6.47199 6.54468 6.60368 6.72022 6.79288 6.94911 7.03820 7.07591 7.36188 7.43198 7.48336 7.59047 7.70749 7.71421 7.96384 8.28810 8.51601 8.59447 8.61690 9.81242 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.030344 B = 0.004500 C = 0.004285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.535910 B = 6220.683805 C = 6533.091852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.073 3.927 3 Si 0.914 3.086 4 H -0.256 1.256 5 H -0.268 1.268 6 H -0.271 1.271 7 C -0.438 4.438 8 H 0.089 0.911 9 C 0.137 3.863 10 C -0.234 4.234 11 C -0.033 4.033 12 C -0.266 4.266 13 C 0.175 3.825 14 C -0.227 4.227 15 C 0.142 3.858 16 N -0.514 5.514 17 H 0.415 0.585 18 C 0.233 3.767 19 N -0.553 5.553 20 C 0.030 3.970 21 C -0.217 4.217 22 C -0.165 4.165 23 C 0.150 3.850 24 F -0.158 7.158 25 C -0.212 4.212 26 H 0.288 0.712 27 H 0.103 0.897 28 H 0.100 0.900 29 H 0.150 0.850 30 H 0.172 0.828 31 H 0.151 0.849 32 H 0.127 0.873 33 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.281 -8.310 2.067 8.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.390 5.390 2 C -0.149 4.149 3 Si 0.737 3.263 4 H -0.179 1.179 5 H -0.193 1.193 6 H -0.196 1.196 7 C -0.465 4.465 8 H 0.107 0.893 9 C 0.134 3.866 10 C -0.254 4.254 11 C -0.051 4.051 12 C -0.268 4.268 13 C 0.169 3.831 14 C -0.252 4.252 15 C 0.004 3.996 16 N -0.109 5.109 17 H 0.250 0.750 18 C -0.011 4.011 19 N -0.274 5.274 20 C -0.115 4.115 21 C -0.241 4.241 22 C -0.173 4.173 23 C 0.130 3.870 24 F -0.137 7.137 25 C -0.233 4.233 26 H 0.100 0.900 27 H 0.121 0.879 28 H 0.118 0.882 29 H 0.168 0.832 30 H 0.189 0.811 31 H 0.169 0.831 32 H 0.145 0.855 33 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -2.878 -8.909 1.363 9.461 hybrid contribution 0.206 1.203 0.288 1.254 sum -2.672 -7.705 1.652 8.321 Atomic orbital electron populations 1.69742 1.08004 1.30290 1.30963 1.26138 0.94816 1.02088 0.91824 0.86152 0.81093 0.80061 0.78983 1.17939 1.19269 1.19581 1.19815 0.98531 0.91023 1.37105 0.89306 1.17464 0.89624 0.92441 0.87063 1.20701 1.04659 0.92438 1.07575 1.20104 0.93458 0.97188 0.94372 1.17871 1.05222 0.89280 1.14427 1.19251 0.83426 0.89831 0.90636 1.20872 1.06209 0.96634 1.01452 1.21720 0.97101 0.96672 0.84133 1.40402 1.43022 1.22390 1.05123 0.74966 1.19223 0.99544 0.92459 0.89907 1.69574 1.24825 1.29342 1.03665 1.22181 0.98934 0.91879 0.98456 1.21294 1.08602 1.02584 0.91583 1.19267 1.06554 0.97224 0.94234 1.17294 0.84747 0.93765 0.91180 1.91383 1.53446 1.97464 1.71405 1.20934 1.01494 0.96137 1.04684 0.90029 0.87915 0.88203 0.83193 0.81120 0.83134 0.85490 0.85202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.34 10.96 55.56 0.61 -17.73 16 2 C 0.07 1.68 5.13 -17.31 -0.09 1.59 16 3 Si 0.91 16.94 29.60 -169.99 -5.03 11.91 16 4 H -0.26 -4.68 7.11 56.52 0.40 -4.28 16 5 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16 6 H -0.27 -4.93 7.11 56.52 0.40 -4.53 16 7 C -0.44 -10.51 9.03 -37.83 -0.34 -10.85 16 8 H 0.09 2.01 7.91 -52.49 -0.42 1.60 16 9 C 0.14 3.38 5.57 -106.81 -0.60 2.78 16 10 C -0.23 -5.19 9.73 -39.27 -0.38 -5.58 16 11 C -0.03 -0.67 9.67 -39.60 -0.38 -1.06 16 12 C -0.27 -5.78 5.30 -104.63 -0.56 -6.33 16 13 C 0.18 3.39 5.03 -104.30 -0.53 2.86 16 14 C -0.23 -3.29 9.71 -39.62 -0.38 -3.67 16 15 C 0.14 1.52 11.08 -17.27 -0.19 1.33 16 16 N -0.51 -6.52 5.29 -12.12 -0.06 -6.58 16 17 H 0.41 3.70 8.91 -40.82 -0.36 3.34 16 18 C 0.23 4.29 8.46 -155.51 -1.32 2.98 16 19 N -0.55 -11.03 11.20 -12.24 -0.14 -11.17 16 20 C 0.03 0.58 11.79 -17.63 -0.21 0.38 16 21 C -0.22 -4.59 10.87 -39.34 -0.43 -5.01 16 22 C -0.17 -3.39 5.89 -106.51 -0.63 -4.02 16 23 C 0.15 3.60 7.20 -39.41 -0.28 3.31 16 24 F -0.16 -3.85 16.68 2.25 0.04 -3.81 16 25 C -0.21 -5.34 8.60 -39.22 -0.34 -5.68 16 26 H 0.29 6.20 8.29 -40.82 -0.34 5.86 16 27 H 0.10 2.08 8.06 -52.49 -0.42 1.66 16 28 H 0.10 1.78 8.06 -52.49 -0.42 1.35 16 29 H 0.15 1.89 8.06 -52.49 -0.42 1.47 16 30 H 0.17 0.84 8.06 -52.49 -0.42 0.41 16 31 H 0.15 2.49 8.06 -52.49 -0.42 2.07 16 32 H 0.13 2.70 8.06 -52.49 -0.42 2.28 16 33 H 0.13 3.41 6.16 -52.49 -0.32 3.08 16 LS Contribution 297.75 15.07 4.49 4.49 Total: -1.00 -30.59 297.75 -9.52 -40.11 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -2.77 Total: 9.76 kcal Atomic # 6 Polarization: -20.33 SS G_CDS: -6.65 Total: -26.97 kcal Atomic # 7 Polarization: -35.89 SS G_CDS: 0.41 Total: -35.48 kcal Atomic # 9 Polarization: -3.85 SS G_CDS: 0.04 Total: -3.81 kcal Atomic # 14 Polarization: 16.94 SS G_CDS: -5.03 Total: 11.91 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -30.59 -9.52 -40.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240413013.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.019 kcal (2) G-P(sol) polarization free energy of solvation -30.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds