Wall clock time and date at job start Tue Mar 31 2020 05:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30780 * 1 3 3 Si 1.86792 * 119.99677 * 2 1 4 4 H 1.48505 * 109.47181 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47266 * 299.99674 * 3 2 1 6 6 H 1.48504 * 109.47514 * 60.00038 * 3 2 1 7 7 C 1.40075 * 119.99976 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00025 * 197.32765 * 7 2 1 9 9 C 1.40725 * 120.00308 * 17.33676 * 7 2 1 10 10 C 1.40816 * 120.30927 * 25.24065 * 9 7 2 11 11 C 1.36319 * 120.02531 * 180.02562 * 10 9 7 12 12 C 1.39267 * 120.68928 * 0.02562 * 11 10 9 13 13 F 1.35097 * 119.68356 * 180.02562 * 12 11 10 14 14 C 1.38306 * 120.62857 * 359.74598 * 12 11 10 15 15 C 1.39228 * 119.94589 * 0.49022 * 14 12 11 16 16 C 1.47562 * 120.33575 * 179.79015 * 15 14 12 17 17 C 1.39894 * 121.13890 * 64.70187 * 16 15 14 18 18 C 1.38162 * 119.20621 * 180.02562 * 17 16 15 19 19 N 1.31764 * 121.78727 * 359.62827 * 18 17 16 20 20 C 1.32611 * 122.06048 * 0.59416 * 19 18 17 21 21 N 1.37501 * 133.13528 * 179.31671 * 20 19 18 22 22 H 0.96999 * 125.00487 * 359.97438 * 21 20 19 23 23 C 1.36786 * 109.98610 * 179.97438 * 21 20 19 24 24 C 1.34522 * 109.85668 * 0.02562 * 23 21 20 25 25 C 1.40753 * 119.90820 * 359.57366 * 20 19 18 26 26 H 0.96996 * 120.00295 * 0.02562 * 1 2 3 27 27 H 1.08000 * 119.98495 * 0.02562 * 10 9 7 28 28 H 1.08000 * 119.65767 * 180.02562 * 11 10 9 29 29 H 1.08006 * 120.02987 * 180.27767 * 14 12 11 30 30 H 1.08003 * 120.39409 * 0.04382 * 17 16 15 31 31 H 1.08001 * 119.10445 * 180.02562 * 18 17 16 32 32 H 1.08004 * 125.07551 * 179.97438 * 23 21 20 33 33 H 1.07996 * 126.56267 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3078 0.0000 0.0000 3 14 2.2417 1.6177 0.0000 4 1 3.7017 1.3465 0.0006 5 1 1.8830 2.3964 -1.2125 6 1 1.8829 2.3965 1.2125 7 6 2.0082 -1.2131 0.0005 8 1 3.0514 -1.2342 0.2791 9 6 1.3526 -2.4043 -0.3621 10 6 0.2246 -2.3667 -1.2042 11 6 -0.4064 -3.5241 -1.5513 12 6 0.0520 -4.7522 -1.0810 13 9 -0.5885 -5.8868 -1.4383 14 6 1.1600 -4.8219 -0.2563 15 6 1.8216 -3.6556 0.1189 16 6 3.0019 -3.7196 1.0022 17 6 4.1819 -4.3469 0.5886 18 6 5.2628 -4.3840 1.4483 19 7 5.2157 -3.8378 2.6465 20 6 4.1275 -3.2318 3.1016 21 7 3.8255 -2.6090 4.2897 22 1 4.4332 -2.5176 5.0402 23 6 2.5420 -2.1374 4.2573 24 6 1.9768 -2.4315 3.0725 25 6 2.9788 -3.1509 2.2922 26 1 -0.4850 0.8400 -0.0004 27 1 -0.1408 -1.4205 -1.5751 28 1 -1.2708 -3.4884 -2.1979 29 1 1.5098 -5.7798 0.0993 30 1 4.2472 -4.7965 -0.3912 31 1 6.1731 -4.8684 1.1271 32 1 2.0545 -1.6085 5.0631 33 1 0.9726 -2.1860 2.7601 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240413633.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:56 Heat of formation + Delta-G solvation = 38.486484 kcal Electronic energy + Delta-G solvation = -21184.850895 eV Core-core repulsion = 17896.868104 eV Total energy + Delta-G solvation = -3287.982790 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -47.50300 -40.84309 -37.82877 -36.87796 -33.79246 -32.80454 -29.83683 -29.58014 -29.11546 -28.08343 -25.24189 -23.27017 -21.99627 -21.10523 -20.75801 -19.72430 -17.71416 -17.37562 -16.25226 -15.74831 -15.51126 -14.90745 -14.62491 -14.34416 -14.26429 -14.09170 -14.04729 -12.93345 -12.68569 -12.43916 -12.29084 -12.09593 -12.03742 -11.67509 -11.50734 -11.32002 -11.13399 -10.90275 -10.44610 -10.15323 -9.74105 -9.37116 -9.31078 -8.78276 -7.86731 -7.79639 -7.48223 -7.25436 -6.97270 -4.51058 1.56405 2.01312 2.53259 2.71929 2.97712 3.02273 3.04897 3.29546 3.33825 3.79280 4.36220 4.55095 5.06336 5.28934 5.35685 5.39475 5.67986 5.76732 5.89614 5.96822 6.02722 6.16529 6.29705 6.49613 6.61210 6.80138 6.91042 6.96583 7.04194 7.09282 7.24639 7.31745 7.49611 7.63324 7.73951 7.81555 7.83579 8.03507 8.38257 8.59968 8.63094 8.71476 9.93147 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.011003 B = 0.009472 C = 0.006052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2544.067595 B = 2955.496467 C = 4625.710171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.779 5.779 2 C 0.080 3.920 3 Si 0.904 3.096 4 H -0.259 1.259 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.428 4.428 8 H 0.081 0.919 9 C 0.128 3.872 10 C -0.138 4.138 11 C -0.121 4.121 12 C -0.050 4.050 13 F -0.174 7.174 14 C -0.088 4.088 15 C -0.177 4.177 16 C 0.116 3.884 17 C -0.219 4.219 18 C 0.133 3.867 19 N -0.525 5.525 20 C 0.277 3.723 21 N -0.589 5.589 22 H 0.411 0.589 23 C 0.022 3.978 24 C -0.145 4.145 25 C -0.132 4.132 26 H 0.285 0.715 27 H 0.128 0.872 28 H 0.100 0.900 29 H 0.102 0.898 30 H 0.130 0.870 31 H 0.150 0.850 32 H 0.169 0.831 33 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.892 -0.648 4.422 5.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.403 5.403 2 C -0.141 4.141 3 Si 0.728 3.272 4 H -0.182 1.182 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.456 4.456 8 H 0.099 0.901 9 C 0.125 3.875 10 C -0.157 4.157 11 C -0.141 4.141 12 C -0.070 4.070 13 F -0.153 7.153 14 C -0.107 4.107 15 C -0.179 4.179 16 C 0.107 3.893 17 C -0.241 4.241 18 C -0.030 4.030 19 N -0.240 5.240 20 C 0.045 3.955 21 N -0.197 5.197 22 H 0.247 0.753 23 C -0.102 4.102 24 C -0.171 4.171 25 C -0.139 4.139 26 H 0.096 0.904 27 H 0.146 0.854 28 H 0.118 0.882 29 H 0.120 0.880 30 H 0.148 0.852 31 H 0.168 0.832 32 H 0.186 0.814 33 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 4.403 -0.482 5.131 6.778 hybrid contribution -0.280 0.752 -0.222 0.832 sum 4.124 0.270 4.909 6.417 Atomic orbital electron populations 1.69779 1.07620 1.29749 1.33158 1.25945 0.94685 1.01465 0.91956 0.86292 0.81304 0.80773 0.78801 1.18246 1.19464 1.19715 1.19518 0.98105 0.90661 1.37316 0.90080 1.17494 0.90534 0.90907 0.88563 1.20939 0.98406 0.96642 0.99760 1.20493 1.00241 0.91916 1.01412 1.17110 0.98874 0.81394 1.09638 1.91286 1.81938 1.50347 1.91752 1.20465 0.95157 0.97089 0.98011 1.18173 1.00349 0.93199 1.06181 1.18500 0.92439 0.88505 0.89810 1.22011 0.93926 1.06519 1.01624 1.22083 0.97760 0.95400 0.87792 1.66309 1.26457 1.14038 1.17174 1.18368 0.91522 0.97895 0.87733 1.41373 1.13345 1.51171 1.13802 0.75313 1.21742 0.84212 1.03933 1.00285 1.21729 1.00164 1.02700 0.92479 1.19865 0.95055 1.04268 0.94723 0.90435 0.85416 0.88163 0.87983 0.85249 0.83248 0.81382 0.83202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.04 10.97 55.55 0.61 -17.43 16 2 C 0.08 1.81 5.14 -17.31 -0.09 1.73 16 3 Si 0.90 17.64 29.59 -169.99 -5.03 12.61 16 4 H -0.26 -5.20 7.11 56.52 0.40 -4.79 16 5 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 6 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 7 C -0.43 -10.33 7.64 -37.95 -0.29 -10.62 16 8 H 0.08 2.03 7.10 -52.49 -0.37 1.65 16 9 C 0.13 3.12 5.59 -106.53 -0.60 2.52 16 10 C -0.14 -3.31 8.62 -39.30 -0.34 -3.65 16 11 C -0.12 -2.76 9.94 -39.89 -0.40 -3.16 16 12 C -0.05 -1.16 7.30 -39.17 -0.29 -1.44 16 13 F -0.17 -3.87 17.26 2.25 0.04 -3.83 16 14 C -0.09 -1.97 9.72 -39.19 -0.38 -2.35 16 15 C -0.18 -4.07 5.38 -104.28 -0.56 -4.63 16 16 C 0.12 2.47 4.40 -104.43 -0.46 2.01 16 17 C -0.22 -4.07 9.86 -38.99 -0.38 -4.46 16 18 C 0.13 2.28 11.12 -17.61 -0.20 2.09 16 19 N -0.52 -9.82 10.37 -12.36 -0.13 -9.95 16 20 C 0.28 5.30 8.43 -155.67 -1.31 3.99 16 21 N -0.59 -9.11 6.05 -12.11 -0.07 -9.19 16 22 H 0.41 4.93 8.96 -40.82 -0.37 4.56 16 23 C 0.02 0.34 11.83 -16.66 -0.20 0.14 16 24 C -0.15 -2.79 10.59 -37.81 -0.40 -3.19 16 25 C -0.13 -2.75 5.43 -104.81 -0.57 -3.32 16 26 H 0.28 5.99 8.29 -40.82 -0.34 5.65 16 27 H 0.13 3.09 6.19 -52.49 -0.32 2.77 16 28 H 0.10 2.06 8.06 -52.49 -0.42 1.64 16 29 H 0.10 2.11 8.06 -52.48 -0.42 1.68 16 30 H 0.13 2.17 8.06 -52.48 -0.42 1.75 16 31 H 0.15 1.97 8.06 -52.49 -0.42 1.54 16 32 H 0.17 1.86 8.06 -52.48 -0.42 1.43 16 33 H 0.15 3.07 8.06 -52.49 -0.42 2.65 16 LS Contribution 295.45 15.07 4.45 4.45 Total: -1.00 -27.38 295.45 -9.32 -36.70 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -2.73 Total: 10.97 kcal Atomic # 6 Polarization: -17.88 SS G_CDS: -6.46 Total: -24.34 kcal Atomic # 7 Polarization: -36.97 SS G_CDS: 0.41 Total: -36.56 kcal Atomic # 9 Polarization: -3.87 SS G_CDS: 0.04 Total: -3.83 kcal Atomic # 14 Polarization: 17.64 SS G_CDS: -5.03 Total: 12.61 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -27.38 -9.32 -36.70 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240413633.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.191 kcal (2) G-P(sol) polarization free energy of solvation -27.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds