Wall clock time and date at job start Tue Mar 31 2020 05:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30780 * 1 3 3 Si 1.86792 * 119.99677 * 2 1 4 4 H 1.48505 * 109.47181 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47266 * 299.99674 * 3 2 1 6 6 H 1.48504 * 109.47514 * 60.00038 * 3 2 1 7 7 C 1.40075 * 119.99976 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00025 * 197.32765 * 7 2 1 9 9 C 1.40725 * 120.00308 * 17.33676 * 7 2 1 10 10 C 1.40816 * 120.30927 * 25.24065 * 9 7 2 11 11 C 1.36319 * 120.02531 * 180.02562 * 10 9 7 12 12 C 1.39267 * 120.68928 * 0.02562 * 11 10 9 13 13 F 1.35097 * 119.68356 * 180.02562 * 12 11 10 14 14 C 1.38306 * 120.62857 * 359.74598 * 12 11 10 15 15 C 1.39228 * 119.94589 * 0.49022 * 14 12 11 16 16 C 1.47562 * 120.33575 * 179.79015 * 15 14 12 17 17 C 1.39894 * 121.13890 * 64.70187 * 16 15 14 18 18 C 1.38162 * 119.20621 * 180.02562 * 17 16 15 19 19 N 1.31764 * 121.78727 * 359.62827 * 18 17 16 20 20 C 1.32611 * 122.06048 * 0.59416 * 19 18 17 21 21 N 1.37501 * 133.13528 * 179.31671 * 20 19 18 22 22 H 0.96999 * 125.00487 * 359.97438 * 21 20 19 23 23 C 1.36786 * 109.98610 * 179.97438 * 21 20 19 24 24 C 1.34522 * 109.85668 * 0.02562 * 23 21 20 25 25 C 1.40753 * 119.90820 * 359.57366 * 20 19 18 26 26 H 0.96996 * 120.00295 * 0.02562 * 1 2 3 27 27 H 1.08000 * 119.98495 * 0.02562 * 10 9 7 28 28 H 1.08000 * 119.65767 * 180.02562 * 11 10 9 29 29 H 1.08006 * 120.02987 * 180.27767 * 14 12 11 30 30 H 1.08003 * 120.39409 * 0.04382 * 17 16 15 31 31 H 1.08001 * 119.10445 * 180.02562 * 18 17 16 32 32 H 1.08004 * 125.07551 * 179.97438 * 23 21 20 33 33 H 1.07996 * 126.56267 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3078 0.0000 0.0000 3 14 2.2417 1.6177 0.0000 4 1 3.7017 1.3465 0.0006 5 1 1.8830 2.3964 -1.2125 6 1 1.8829 2.3965 1.2125 7 6 2.0082 -1.2131 0.0005 8 1 3.0514 -1.2342 0.2791 9 6 1.3526 -2.4043 -0.3621 10 6 0.2246 -2.3667 -1.2042 11 6 -0.4064 -3.5241 -1.5513 12 6 0.0520 -4.7522 -1.0810 13 9 -0.5885 -5.8868 -1.4383 14 6 1.1600 -4.8219 -0.2563 15 6 1.8216 -3.6556 0.1189 16 6 3.0019 -3.7196 1.0022 17 6 4.1819 -4.3469 0.5886 18 6 5.2628 -4.3840 1.4483 19 7 5.2157 -3.8378 2.6465 20 6 4.1275 -3.2318 3.1016 21 7 3.8255 -2.6090 4.2897 22 1 4.4332 -2.5176 5.0402 23 6 2.5420 -2.1374 4.2573 24 6 1.9768 -2.4315 3.0725 25 6 2.9788 -3.1509 2.2922 26 1 -0.4850 0.8400 -0.0004 27 1 -0.1408 -1.4205 -1.5751 28 1 -1.2708 -3.4884 -2.1979 29 1 1.5098 -5.7798 0.0993 30 1 4.2472 -4.7965 -0.3912 31 1 6.1731 -4.8684 1.1271 32 1 2.0545 -1.6085 5.0631 33 1 0.9726 -2.1860 2.7601 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240413633.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:55 Heat of formation + Delta-G solvation = 25.756612 kcal Electronic energy + Delta-G solvation = -21185.402903 eV Core-core repulsion = 17896.868104 eV Total energy + Delta-G solvation = -3288.534799 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.30149 -42.23105 -39.50354 -38.33880 -35.55506 -34.35376 -31.42300 -31.27940 -30.60032 -29.56856 -27.01461 -24.82324 -23.45554 -22.81013 -22.36019 -21.17130 -19.36969 -19.01909 -17.73847 -17.33822 -17.11954 -16.53416 -16.23880 -16.05914 -15.79637 -15.70780 -15.45500 -14.62355 -14.07132 -14.05225 -13.88400 -13.79337 -13.63974 -13.12102 -13.06590 -12.85536 -12.74653 -12.56175 -12.19767 -11.84622 -11.48937 -11.05260 -10.89217 -10.24816 -9.54017 -9.31870 -9.20672 -8.78252 -8.63048 -6.32771 0.09323 0.56699 0.78957 0.95376 1.37497 1.43992 1.49685 1.94774 2.02947 2.17284 2.60026 3.08442 3.54991 3.73689 3.90397 4.08563 4.10530 4.25121 4.27571 4.40763 4.49633 4.67165 4.88544 5.00331 5.05521 5.10819 5.16760 5.25838 5.46329 5.55586 5.64287 5.77934 5.80862 5.90506 6.03390 6.17630 6.24515 6.56110 6.60261 6.82965 6.91359 7.22178 8.22920 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.011003 B = 0.009472 C = 0.006052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2544.067595 B = 2955.496467 C = 4625.710171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.050 3.950 3 Si 0.966 3.034 4 H -0.269 1.269 5 H -0.260 1.260 6 H -0.262 1.262 7 C -0.441 4.441 8 H 0.065 0.935 9 C 0.107 3.893 10 C -0.157 4.157 11 C -0.124 4.124 12 C -0.063 4.063 13 F -0.171 7.171 14 C -0.093 4.093 15 C -0.175 4.175 16 C 0.078 3.922 17 C -0.218 4.218 18 C 0.134 3.866 19 N -0.526 5.526 20 C 0.259 3.741 21 N -0.573 5.573 22 H 0.431 0.569 23 C 0.066 3.934 24 C -0.197 4.197 25 C -0.154 4.154 26 H 0.294 0.706 27 H 0.120 0.880 28 H 0.118 0.882 29 H 0.116 0.884 30 H 0.143 0.857 31 H 0.193 0.807 32 H 0.219 0.781 33 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.235 -0.084 5.806 7.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.168 4.168 3 Si 0.787 3.213 4 H -0.193 1.193 5 H -0.185 1.185 6 H -0.186 1.186 7 C -0.469 4.469 8 H 0.083 0.917 9 C 0.104 3.896 10 C -0.176 4.176 11 C -0.143 4.143 12 C -0.083 4.083 13 F -0.150 7.150 14 C -0.112 4.112 15 C -0.176 4.176 16 C 0.070 3.930 17 C -0.240 4.240 18 C -0.030 4.030 19 N -0.241 5.241 20 C 0.026 3.974 21 N -0.182 5.182 22 H 0.271 0.729 23 C -0.060 4.060 24 C -0.223 4.223 25 C -0.161 4.161 26 H 0.105 0.895 27 H 0.138 0.862 28 H 0.136 0.864 29 H 0.134 0.866 30 H 0.160 0.840 31 H 0.209 0.791 32 H 0.235 0.765 33 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 5.751 0.070 6.531 8.703 hybrid contribution -0.679 0.526 -0.573 1.033 sum 5.072 0.597 5.958 7.847 Atomic orbital electron populations 1.69794 1.08592 1.31044 1.33043 1.26549 0.95291 1.03748 0.91246 0.85385 0.79266 0.77240 0.79385 1.19322 1.18473 1.18649 1.19442 0.97413 0.91575 1.38451 0.91664 1.17771 0.91020 0.91810 0.88976 1.20907 0.99212 0.96724 1.00752 1.20649 1.00617 0.91572 1.01427 1.17241 0.99286 0.81578 1.10156 1.91284 1.81891 1.50077 1.91765 1.20663 0.95006 0.97706 0.97874 1.18425 1.00783 0.92819 1.05609 1.18650 0.92941 0.90960 0.90452 1.22239 0.93557 1.05722 1.02492 1.22719 0.98639 0.94660 0.86957 1.66444 1.26072 1.13873 1.17714 1.18610 0.91249 0.98749 0.88820 1.41415 1.13655 1.49746 1.13351 0.72945 1.22357 0.83380 1.00589 0.99627 1.21614 0.99772 1.06204 0.94695 1.20128 0.96332 1.04583 0.95052 0.89493 0.86220 0.86383 0.86568 0.83964 0.79060 0.76486 0.85690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -37.60 10.97 21.85 0.24 -37.36 16 2 C 0.05 2.31 5.14 85.30 0.44 2.74 16 3 Si 0.97 36.02 29.59 68.60 2.03 38.05 16 4 H -0.27 -10.39 7.11 99.48 0.71 -9.69 16 5 H -0.26 -9.26 7.11 99.48 0.71 -8.55 16 6 H -0.26 -9.29 7.11 99.48 0.71 -8.58 16 7 C -0.44 -21.92 7.64 23.32 0.18 -21.74 16 8 H 0.07 3.38 7.10 -2.91 -0.02 3.36 16 9 C 0.11 5.40 5.59 -21.10 -0.12 5.28 16 10 C -0.16 -7.75 8.62 22.45 0.19 -7.55 16 11 C -0.12 -5.73 9.94 22.07 0.22 -5.51 16 12 C -0.06 -2.92 7.30 22.53 0.16 -2.75 16 13 F -0.17 -7.58 17.26 44.97 0.78 -6.81 16 14 C -0.09 -4.25 9.72 22.52 0.22 -4.03 16 15 C -0.17 -8.24 5.38 -19.64 -0.11 -8.35 16 16 C 0.08 3.39 4.40 -19.74 -0.09 3.31 16 17 C -0.22 -8.00 9.86 22.65 0.22 -7.78 16 18 C 0.13 4.32 11.12 84.68 0.94 5.26 16 19 N -0.53 -18.66 10.37 -193.02 -2.00 -20.66 16 20 C 0.26 9.52 8.43 133.90 1.13 10.65 16 21 N -0.57 -16.19 6.05 -192.22 -1.16 -17.35 16 22 H 0.43 8.80 8.96 -92.71 -0.83 7.97 16 23 C 0.07 1.85 11.83 83.07 0.98 2.83 16 24 C -0.20 -7.63 10.59 23.42 0.25 -7.38 16 25 C -0.15 -6.43 5.43 -19.99 -0.11 -6.53 16 26 H 0.29 12.39 8.29 -92.71 -0.77 11.62 16 27 H 0.12 6.01 6.19 -2.91 -0.02 5.99 16 28 H 0.12 4.90 8.06 -2.91 -0.02 4.87 16 29 H 0.12 4.83 8.06 -2.91 -0.02 4.81 16 30 H 0.14 4.68 8.06 -2.91 -0.02 4.65 16 31 H 0.19 4.38 8.06 -2.91 -0.02 4.36 16 32 H 0.22 3.82 8.06 -2.91 -0.02 3.80 16 33 H 0.13 5.38 8.06 -2.91 -0.02 5.36 16 Total: -1.00 -60.47 295.45 4.74 -55.73 By element: Atomic # 1 Polarization: 29.62 SS G_CDS: 0.34 Total: 29.96 kcal Atomic # 6 Polarization: -46.08 SS G_CDS: 4.52 Total: -41.56 kcal Atomic # 7 Polarization: -72.45 SS G_CDS: -2.92 Total: -75.37 kcal Atomic # 9 Polarization: -7.58 SS G_CDS: 0.78 Total: -6.81 kcal Atomic # 14 Polarization: 36.02 SS G_CDS: 2.03 Total: 38.05 kcal Total: -60.47 4.74 -55.73 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240413633.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.490 kcal (2) G-P(sol) polarization free energy of solvation -60.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds