Wall clock time and date at job start Tue Mar 31 2020 05:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30641 * 1 3 3 Si 1.86805 * 120.00004 * 2 1 4 4 H 1.48497 * 109.47279 * 274.54051 * 3 2 1 5 5 H 1.48502 * 109.46694 * 34.54192 * 3 2 1 6 6 H 1.48503 * 109.46996 * 154.53953 * 3 2 1 7 7 C 1.40274 * 119.99978 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99919 * 197.42586 * 7 2 1 9 9 C 1.40722 * 120.00171 * 17.42220 * 7 2 1 10 10 C 1.40818 * 120.60250 * 25.27880 * 9 7 2 11 11 C 1.37625 * 119.81623 * 179.97438 * 10 9 7 12 12 F 1.35095 * 119.42588 * 179.97438 * 11 10 9 13 13 C 1.39055 * 121.14093 * 0.02562 * 11 10 9 14 14 C 1.37842 * 121.27559 * 359.74342 * 13 11 10 15 15 C 1.39548 * 120.07322 * 0.51221 * 14 13 11 16 16 C 1.47247 * 120.54805 * 179.76987 * 15 14 13 17 17 C 1.40670 * 120.77095 * 64.76940 * 16 15 14 18 18 C 1.35607 * 120.19494 * 180.02562 * 17 16 15 19 19 N 1.34616 * 121.95322 * 359.97438 * 18 17 16 20 20 H 0.97000 * 119.48877 * 179.97438 * 19 18 17 21 21 C 1.37370 * 121.02212 * 359.97438 * 19 18 17 22 22 N 1.32396 * 133.51277 * 180.02562 * 21 19 18 23 23 C 1.33316 * 110.56977 * 179.97438 * 22 21 19 24 24 C 1.36252 * 109.73143 * 359.97438 * 23 22 21 25 25 C 1.40778 * 106.34815 * 0.02562 * 24 23 22 26 26 H 0.97000 * 119.99627 * 359.97438 * 1 2 3 27 27 H 1.08006 * 120.08700 * 359.95799 * 10 9 7 28 28 H 1.08000 * 119.36614 * 179.97438 * 13 11 10 29 29 H 1.07995 * 119.96477 * 180.28637 * 14 13 11 30 30 H 1.08006 * 119.90072 * 0.02562 * 17 16 15 31 31 H 1.08000 * 119.02372 * 180.25957 * 18 17 16 32 32 H 1.08001 * 125.13706 * 179.97438 * 23 22 21 33 33 H 1.08004 * 126.82195 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 2.3920 2.1019 -1.3956 5 1 1.4891 2.6230 0.7939 6 1 3.5827 1.4144 0.6019 7 6 2.0078 -1.2148 -0.0005 8 1 3.0506 -1.2364 0.2796 9 6 1.3526 -2.4054 -0.3660 10 6 0.2257 -2.3736 -1.2097 11 6 -0.4023 -3.5479 -1.5573 12 9 -1.4831 -3.5082 -2.3668 13 6 0.0558 -4.7744 -1.0887 14 6 1.1572 -4.8594 -0.2643 15 6 1.8303 -3.7006 0.1251 16 6 3.0050 -3.7789 1.0094 17 6 4.1852 -4.4152 0.5837 18 6 5.2600 -4.4810 1.4080 19 7 5.2429 -3.9496 2.6447 20 1 6.0321 -4.0176 3.2046 21 6 4.1252 -3.3125 3.1262 22 7 3.8392 -2.7149 4.2725 23 6 2.5938 -2.2397 4.2550 24 6 2.0104 -2.5220 3.0565 25 6 2.9739 -3.2165 2.3007 26 1 -0.4849 0.8401 0.0004 27 1 -0.1449 -1.4302 -1.5829 28 1 -0.4592 -5.6781 -1.3792 29 1 1.4975 -5.8235 0.0835 30 1 4.2354 -4.8526 -0.4025 31 1 6.1578 -4.9702 1.0603 32 1 2.1188 -1.7108 5.0681 33 1 1.0078 -2.2648 2.7480 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240413764.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:41 Heat of formation + Delta-G solvation = 56.157826 kcal Electronic energy + Delta-G solvation = -21163.159985 eV Core-core repulsion = 17875.943481 eV Total energy + Delta-G solvation = -3287.216503 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -47.74977 -40.89095 -37.57416 -37.25043 -34.02922 -33.36461 -30.00501 -29.37292 -28.34981 -27.73648 -25.74690 -23.37615 -21.96246 -21.24280 -20.61075 -19.64385 -17.73279 -16.96467 -16.50624 -16.06833 -15.71651 -15.01467 -14.83746 -14.75315 -14.39499 -14.37209 -13.37707 -13.05698 -12.82837 -12.67136 -12.20697 -11.90080 -11.79015 -11.74068 -11.35786 -11.28778 -11.03740 -10.70001 -10.50638 -10.17684 -10.04661 -9.48837 -9.40927 -8.75681 -7.77940 -7.56867 -7.36347 -7.06901 -6.79828 -4.64481 0.77067 2.12895 2.46731 2.68510 2.95390 2.96776 3.01545 3.06408 3.75748 4.21022 4.23069 4.34272 4.66495 5.15569 5.25180 5.44074 5.56412 5.66150 5.74850 5.98771 6.07572 6.25157 6.42032 6.65205 6.67635 6.76506 6.79799 6.88888 6.98622 7.26513 7.28543 7.34323 7.50885 7.60610 7.67335 7.74065 7.94965 7.95308 8.31006 8.50929 8.60778 8.83940 9.83966 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.012684 B = 0.008412 C = 0.005984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2207.019984 B = 3327.601160 C = 4677.896396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.763 5.763 2 C 0.078 3.922 3 Si 0.910 3.090 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.258 1.258 7 C -0.415 4.415 8 H 0.085 0.915 9 C 0.158 3.842 10 C -0.209 4.209 11 C 0.123 3.877 12 F -0.167 7.167 13 C -0.292 4.292 14 C -0.028 4.028 15 C -0.230 4.230 16 C 0.186 3.814 17 C -0.233 4.233 18 C 0.139 3.861 19 N -0.516 5.516 20 H 0.413 0.587 21 C 0.226 3.774 22 N -0.554 5.554 23 C 0.018 3.982 24 C -0.193 4.193 25 C -0.154 4.154 26 H 0.289 0.711 27 H 0.131 0.869 28 H 0.101 0.899 29 H 0.100 0.900 30 H 0.147 0.853 31 H 0.168 0.832 32 H 0.147 0.853 33 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.053 -4.878 -0.097 9.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.385 5.385 2 C -0.145 4.145 3 Si 0.734 3.266 4 H -0.190 1.190 5 H -0.197 1.197 6 H -0.181 1.181 7 C -0.442 4.442 8 H 0.103 0.897 9 C 0.154 3.846 10 C -0.229 4.229 11 C 0.103 3.897 12 F -0.146 7.146 13 C -0.312 4.312 14 C -0.047 4.047 15 C -0.231 4.231 16 C 0.180 3.820 17 C -0.258 4.258 18 C 0.000 4.000 19 N -0.111 5.111 20 H 0.248 0.752 21 C -0.019 4.019 22 N -0.275 5.275 23 C -0.126 4.126 24 C -0.216 4.216 25 C -0.162 4.162 26 H 0.100 0.900 27 H 0.148 0.852 28 H 0.119 0.881 29 H 0.119 0.881 30 H 0.164 0.836 31 H 0.185 0.815 32 H 0.165 0.835 33 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 8.346 -4.531 0.817 9.531 hybrid contribution -0.239 0.706 -0.578 0.943 sum 8.107 -3.825 0.239 8.967 Atomic orbital electron populations 1.69723 1.07894 1.30369 1.30480 1.26063 0.94758 1.01885 0.91748 0.86218 0.81011 0.79991 0.79391 1.18955 1.19707 1.18120 1.19596 0.98274 0.90591 1.35739 0.89714 1.18151 0.89028 0.90189 0.87196 1.21177 1.01382 0.95959 1.04425 1.17738 0.84705 0.95149 0.92080 1.91341 1.53952 1.97614 1.71698 1.19988 1.04416 0.95054 1.11700 1.20269 0.94112 0.95550 0.94724 1.19456 1.01750 0.93860 1.08055 1.19154 0.91218 0.82002 0.89617 1.20834 0.93003 1.10252 1.01712 1.21630 1.00279 0.94663 0.83387 1.40374 1.13729 1.43644 1.13397 0.75230 1.19247 0.86608 1.00968 0.95035 1.69539 1.17930 1.19432 1.20621 1.22150 0.90585 1.02278 0.97566 1.21336 1.00097 1.05403 0.94793 1.19153 0.95530 1.07356 0.94165 0.89969 0.85171 0.88128 0.88149 0.83571 0.81497 0.83520 0.85135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -18.40 11.00 55.56 0.61 -17.79 16 2 C 0.08 1.84 5.15 -17.29 -0.09 1.75 16 3 Si 0.91 18.03 29.60 -169.99 -5.03 13.00 16 4 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 5 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 6 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 7 C -0.42 -10.16 7.83 -37.88 -0.30 -10.45 16 8 H 0.08 2.10 7.28 -52.48 -0.38 1.72 16 9 C 0.16 3.87 5.73 -104.65 -0.60 3.27 16 10 C -0.21 -5.20 8.66 -38.83 -0.34 -5.54 16 11 C 0.12 2.89 7.26 -39.50 -0.29 2.60 16 12 F -0.17 -3.82 17.24 2.25 0.04 -3.79 16 13 C -0.29 -6.30 9.95 -39.42 -0.39 -6.69 16 14 C -0.03 -0.58 9.75 -39.24 -0.38 -0.96 16 15 C -0.23 -5.08 5.47 -102.41 -0.56 -5.64 16 16 C 0.19 3.72 4.54 -104.32 -0.47 3.24 16 17 C -0.23 -3.48 9.72 -39.60 -0.38 -3.87 16 18 C 0.14 1.58 11.08 -17.27 -0.19 1.39 16 19 N -0.52 -7.02 5.29 -12.12 -0.06 -7.09 16 20 H 0.41 4.09 8.91 -40.82 -0.36 3.73 16 21 C 0.23 4.41 8.46 -155.49 -1.32 3.09 16 22 N -0.55 -11.76 11.20 -12.24 -0.14 -11.90 16 23 C 0.02 0.38 11.79 -17.62 -0.21 0.17 16 24 C -0.19 -4.40 10.53 -39.34 -0.41 -4.82 16 25 C -0.15 -3.32 5.43 -106.50 -0.58 -3.90 16 26 H 0.29 6.33 8.29 -40.82 -0.34 5.99 16 27 H 0.13 3.35 6.23 -52.48 -0.33 3.02 16 28 H 0.10 1.96 8.06 -52.49 -0.42 1.53 16 29 H 0.10 1.79 8.06 -52.49 -0.42 1.37 16 30 H 0.15 1.87 8.06 -52.48 -0.42 1.45 16 31 H 0.17 0.94 8.06 -52.49 -0.42 0.52 16 32 H 0.15 2.73 8.06 -52.49 -0.42 2.30 16 33 H 0.13 3.16 8.06 -52.48 -0.42 2.73 16 LS Contribution 296.06 15.07 4.46 4.46 Total: -1.00 -30.15 296.06 -9.37 -39.52 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -2.74 Total: 9.94 kcal Atomic # 6 Polarization: -19.85 SS G_CDS: -6.51 Total: -26.36 kcal Atomic # 7 Polarization: -37.19 SS G_CDS: 0.41 Total: -36.78 kcal Atomic # 9 Polarization: -3.82 SS G_CDS: 0.04 Total: -3.79 kcal Atomic # 14 Polarization: 18.03 SS G_CDS: -5.03 Total: 13.00 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -30.15 -9.37 -39.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240413764.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.679 kcal (2) G-P(sol) polarization free energy of solvation -30.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds