Wall clock time and date at job start Tue Mar 31 2020 05:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86805 * 120.00269 * 2 1 4 4 H 1.48502 * 109.47039 * 270.00086 * 3 2 1 5 5 H 1.48499 * 109.46979 * 29.99793 * 3 2 1 6 6 H 1.48497 * 109.47276 * 150.00070 * 3 2 1 7 7 C 1.39989 * 119.99930 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99946 * 164.00740 * 7 2 1 9 9 C 1.40699 * 120.00154 * 344.00638 * 7 2 1 10 10 C 1.40825 * 120.31202 * 333.10649 * 9 7 2 11 11 C 1.36282 * 120.03082 * 179.97438 * 10 9 7 12 12 C 1.39313 * 120.69394 * 359.97438 * 11 10 9 13 13 F 1.35102 * 119.67321 * 179.97438 * 12 11 10 14 14 C 1.38198 * 120.64647 * 359.78533 * 12 11 10 15 15 C 1.39329 * 119.93974 * 0.47217 * 14 12 11 16 16 C 1.47483 * 120.33915 * 179.78800 * 15 14 12 17 17 C 1.41782 * 120.38699 * 129.69717 * 16 15 14 18 18 C 1.34481 * 120.12462 * 180.02562 * 17 16 15 19 19 N 1.36766 * 120.97710 * 0.04060 * 18 17 16 20 20 C 1.36782 * 132.26402 * 179.97438 * 19 18 17 21 21 C 1.35382 * 107.20609 * 179.97438 * 20 19 18 22 22 N 1.33268 * 108.65489 * 359.97438 * 21 20 19 23 23 C 1.32788 * 109.15695 * 359.97438 * 22 21 20 24 24 C 1.38802 * 120.39320 * 309.71877 * 16 15 14 25 25 H 0.97001 * 119.99686 * 0.02562 * 1 2 3 26 26 H 1.08003 * 119.98444 * 0.02562 * 10 9 7 27 27 H 1.07994 * 119.65078 * 180.02562 * 11 10 9 28 28 H 1.08002 * 120.03134 * 180.23844 * 14 12 11 29 29 H 1.07993 * 119.93814 * 0.02562 * 17 16 15 30 30 H 1.08000 * 119.50805 * 180.02562 * 18 17 16 31 31 H 1.07992 * 126.39793 * 359.71518 * 20 19 18 32 32 H 1.07998 * 125.67577 * 179.97438 * 21 20 19 33 33 H 1.08004 * 120.46405 * 359.96345 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.4899 2.0464 -1.4001 5 1 1.4398 2.6527 0.7000 6 1 3.5399 1.4401 0.7000 7 6 2.0082 -1.2123 0.0005 8 1 3.0569 -1.2306 -0.2571 9 6 1.3456 -2.4071 0.3368 10 6 0.2212 -2.3820 1.1844 11 6 -0.4165 -3.5426 1.5059 12 6 0.0310 -4.7627 1.0039 13 9 -0.6165 -5.9008 1.3365 14 6 1.1284 -4.8196 0.1659 15 6 1.8038 -3.6499 -0.1759 16 6 2.9789 -3.7010 -1.0658 17 6 3.0632 -2.8443 -2.1923 18 6 4.1368 -2.8957 -3.0006 19 7 5.1610 -3.7684 -2.7558 20 6 6.3372 -4.0131 -3.4097 21 6 6.9798 -4.9892 -2.7262 22 7 6.2314 -5.3416 -1.6814 23 6 5.1207 -4.6139 -1.6758 24 6 4.0150 -4.5887 -0.8105 25 1 -0.4850 0.8401 -0.0004 26 1 -0.1363 -1.4424 1.5791 27 1 -1.2784 -3.5162 2.1561 28 1 1.4645 -5.7704 -0.2207 29 1 2.2637 -2.1491 -2.4018 30 1 4.1909 -2.2383 -3.8557 31 1 6.6859 -3.5226 -4.3063 32 1 7.9394 -5.4120 -2.9847 33 1 3.9717 -5.2503 0.0421 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240508657.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:54 Heat of formation + Delta-G solvation = 54.485185 kcal Electronic energy + Delta-G solvation = -20759.263211 eV Core-core repulsion = 17471.974177 eV Total energy + Delta-G solvation = -3287.289035 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -47.60167 -42.24355 -38.22258 -36.34780 -33.96351 -33.24892 -30.47261 -29.85572 -29.38598 -27.60042 -25.32585 -23.52181 -22.43859 -21.35825 -21.22866 -20.03793 -17.65041 -17.32223 -16.68592 -15.88681 -15.65564 -15.35048 -14.85223 -14.51937 -14.35422 -14.14618 -13.99742 -13.57031 -13.18413 -12.89201 -12.39273 -12.17104 -11.91144 -11.60532 -11.38396 -11.35546 -11.14746 -11.05998 -10.64708 -10.38332 -9.99295 -9.76527 -9.73192 -9.44703 -8.44646 -7.95162 -7.60316 -7.23145 -7.03383 -4.67068 1.19628 1.67751 2.43520 2.62824 2.89066 2.90139 2.97257 3.04105 3.27859 3.66801 4.04776 4.25813 4.70626 4.85667 5.08958 5.25409 5.35765 5.61766 5.68947 5.73506 5.83175 5.93272 6.05666 6.15626 6.40705 6.49088 6.65103 6.78011 6.86837 6.90422 6.96082 7.06459 7.17527 7.40299 7.52564 7.60690 7.69138 7.88760 8.22175 8.27748 8.47387 8.55566 9.79758 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.012429 B = 0.007195 C = 0.004792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.168044 B = 3890.660091 C = 5841.963281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.778 5.778 2 C 0.076 3.924 3 Si 0.907 3.093 4 H -0.266 1.266 5 H -0.273 1.273 6 H -0.258 1.258 7 C -0.441 4.441 8 H 0.086 0.914 9 C 0.127 3.873 10 C -0.132 4.132 11 C -0.121 4.121 12 C -0.042 4.042 13 F -0.171 7.171 14 C -0.088 4.088 15 C -0.176 4.176 16 C 0.048 3.952 17 C -0.095 4.095 18 C 0.025 3.975 19 N -0.361 5.361 20 C -0.125 4.125 21 C 0.025 3.975 22 N -0.515 5.515 23 C 0.240 3.760 24 C -0.122 4.122 25 H 0.288 0.712 26 H 0.128 0.872 27 H 0.103 0.897 28 H 0.106 0.894 29 H 0.160 0.840 30 H 0.156 0.844 31 H 0.173 0.827 32 H 0.172 0.828 33 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.731 0.522 -4.995 6.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.402 5.402 2 C -0.144 4.144 3 Si 0.731 3.269 4 H -0.191 1.191 5 H -0.197 1.197 6 H -0.181 1.181 7 C -0.469 4.469 8 H 0.104 0.896 9 C 0.124 3.876 10 C -0.151 4.151 11 C -0.140 4.140 12 C -0.062 4.062 13 F -0.151 7.151 14 C -0.108 4.108 15 C -0.178 4.178 16 C 0.042 3.958 17 C -0.116 4.116 18 C -0.096 4.096 19 N -0.033 5.033 20 C -0.256 4.256 21 C -0.128 4.128 22 N -0.235 5.235 23 C -0.002 4.002 24 C -0.142 4.142 25 H 0.099 0.901 26 H 0.146 0.854 27 H 0.121 0.879 28 H 0.124 0.876 29 H 0.177 0.823 30 H 0.174 0.826 31 H 0.190 0.810 32 H 0.189 0.811 33 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 4.737 0.084 -4.491 6.528 hybrid contribution 0.021 1.296 -0.688 1.468 sum 4.758 1.380 -5.179 7.167 Atomic orbital electron populations 1.69780 1.07683 1.30163 1.32534 1.25998 0.94782 1.01643 0.92023 0.86289 0.80843 0.80121 0.79654 1.19123 1.19731 1.18136 1.19577 0.97825 0.90641 1.38885 0.89569 1.17541 0.90625 0.90999 0.88443 1.20941 0.98116 0.96615 0.99438 1.20542 1.00279 0.91951 1.01253 1.17149 0.98730 0.81493 1.08816 1.91305 1.81545 1.49930 1.92311 1.20575 0.95073 0.97276 0.97827 1.18101 1.00030 0.93435 1.06273 1.18750 0.92758 0.91738 0.92558 1.21202 0.97378 0.99548 0.93452 1.21406 0.88685 0.96639 1.02894 1.42855 1.14250 1.25711 1.20453 1.22497 0.89349 1.08889 1.04909 1.22350 1.00250 0.97058 0.93141 1.70728 1.03234 1.26636 1.22882 1.20883 0.96851 0.92200 0.90256 1.20594 0.90372 1.03297 0.99936 0.90131 0.85382 0.87910 0.87584 0.82267 0.82639 0.80988 0.81090 0.83807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -17.23 11.00 55.55 0.61 -16.62 16 2 C 0.08 1.63 5.16 -17.32 -0.09 1.54 16 3 Si 0.91 16.36 29.59 -169.99 -5.03 11.33 16 4 H -0.27 -4.71 7.11 56.52 0.40 -4.31 16 5 H -0.27 -4.86 7.11 56.52 0.40 -4.46 16 6 H -0.26 -4.76 7.11 56.52 0.40 -4.36 16 7 C -0.44 -9.88 7.12 -38.00 -0.27 -10.15 16 8 H 0.09 1.90 6.65 -52.49 -0.35 1.56 16 9 C 0.13 2.93 5.55 -106.53 -0.59 2.33 16 10 C -0.13 -3.02 8.61 -39.31 -0.34 -3.36 16 11 C -0.12 -2.64 9.94 -39.89 -0.40 -3.04 16 12 C -0.04 -0.93 7.30 -39.20 -0.29 -1.22 16 13 F -0.17 -3.71 17.26 2.25 0.04 -3.67 16 14 C -0.09 -1.89 9.50 -39.19 -0.37 -2.26 16 15 C -0.18 -3.82 5.54 -104.27 -0.58 -4.40 16 16 C 0.05 0.95 4.94 -104.57 -0.52 0.43 16 17 C -0.10 -1.67 7.97 -39.56 -0.32 -1.99 16 18 C 0.02 0.38 10.91 -16.68 -0.18 0.20 16 19 N -0.36 -6.08 2.95 -62.71 -0.19 -6.27 16 20 C -0.12 -1.80 11.76 -16.36 -0.19 -1.99 16 21 C 0.02 0.38 11.83 -17.95 -0.21 0.17 16 22 N -0.51 -9.75 11.32 -12.82 -0.15 -9.90 16 23 C 0.24 4.59 7.79 -155.91 -1.21 3.38 16 24 C -0.12 -2.34 9.65 -38.55 -0.37 -2.71 16 25 H 0.29 5.80 8.30 -40.82 -0.34 5.46 16 26 H 0.13 2.97 6.26 -52.48 -0.33 2.64 16 27 H 0.10 2.03 8.06 -52.49 -0.42 1.60 16 28 H 0.11 2.09 8.05 -52.49 -0.42 1.66 16 29 H 0.16 2.78 7.35 -52.49 -0.39 2.39 16 30 H 0.16 1.81 8.06 -52.49 -0.42 1.39 16 31 H 0.17 1.79 8.06 -52.49 -0.42 1.37 16 32 H 0.17 1.95 8.06 -52.49 -0.42 1.53 16 33 H 0.14 2.68 8.06 -52.48 -0.42 2.26 16 LS Contribution 293.87 15.07 4.43 4.43 Total: -1.00 -26.07 293.87 -8.94 -35.01 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -2.73 Total: 8.74 kcal Atomic # 6 Polarization: -17.13 SS G_CDS: -5.93 Total: -23.06 kcal Atomic # 7 Polarization: -33.06 SS G_CDS: 0.28 Total: -32.78 kcal Atomic # 9 Polarization: -3.71 SS G_CDS: 0.04 Total: -3.67 kcal Atomic # 14 Polarization: 16.36 SS G_CDS: -5.03 Total: 11.33 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -26.07 -8.94 -35.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240508657.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.500 kcal (2) G-P(sol) polarization free energy of solvation -26.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds