Wall clock time and date at job start Tue Mar 31 2020 05:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30854 * 1 3 3 Si 1.86791 * 120.00230 * 2 1 4 4 H 1.48497 * 109.47370 * 269.99887 * 3 2 1 5 5 H 1.48504 * 109.47191 * 30.00293 * 3 2 1 6 6 H 1.48503 * 109.47146 * 150.00327 * 3 2 1 7 7 C 1.39925 * 119.99423 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99518 * 197.99749 * 7 2 1 9 9 C 1.40959 * 120.00512 * 17.99832 * 7 2 1 10 10 C 1.41010 * 120.09728 * 204.73454 * 9 7 2 11 11 C 1.36162 * 119.93589 * 179.74035 * 10 9 7 12 12 C 1.40049 * 120.13352 * 0.52735 * 11 10 9 13 13 C 1.47749 * 119.90449 * 179.75885 * 12 11 10 14 14 C 1.40931 * 119.34907 * 129.92425 * 13 12 11 15 15 C 1.35233 * 121.57910 * 180.26898 * 14 13 12 16 16 C 1.41355 * 119.90221 * 359.78125 * 15 14 13 17 17 C 1.38102 * 134.47863 * 179.97438 * 16 15 14 18 18 N 1.34151 * 107.96660 * 180.02562 * 17 16 15 19 19 H 0.96999 * 125.03211 * 179.97438 * 18 17 16 20 20 N 1.39952 * 109.94101 * 0.02562 * 18 17 16 21 21 C 1.32257 * 108.88917 * 359.97438 * 20 18 17 22 22 C 1.38292 * 119.35497 * 309.73053 * 13 12 11 23 23 C 1.40259 * 120.18982 * 359.49293 * 12 11 10 24 24 F 1.35102 * 119.97150 * 180.25051 * 23 12 11 25 25 C 1.36411 * 120.06240 * 0.22328 * 23 12 11 26 26 H 0.96996 * 119.99669 * 359.97438 * 1 2 3 27 27 H 1.07996 * 120.02796 * 0.03585 * 10 9 7 28 28 H 1.08005 * 119.93210 * 180.27107 * 11 10 9 29 29 H 1.08000 * 119.20491 * 0.04617 * 14 13 12 30 30 H 1.08004 * 120.04538 * 179.80805 * 15 14 13 31 31 H 1.07990 * 126.01556 * 0.04859 * 17 16 15 32 32 H 1.08001 * 120.30792 * 0.02562 * 22 13 12 33 33 H 1.08002 * 120.07172 * 180.02562 * 25 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2426 1.6176 0.0000 4 1 2.4901 2.0463 -1.4000 5 1 1.4401 2.6526 0.7001 6 1 3.5402 1.4400 0.7000 7 6 2.0080 -1.2119 -0.0005 8 1 3.0485 -1.2349 0.2885 9 6 1.3550 -2.4026 -0.3783 10 6 1.8269 -3.6466 0.0887 11 6 1.1903 -4.7944 -0.2740 12 6 0.0745 -4.7427 -1.1187 13 6 -0.6092 -5.9917 -1.5133 14 6 -2.0084 -6.0867 -1.3747 15 6 -2.6793 -7.2099 -1.7167 16 6 -1.9750 -8.3223 -2.2312 17 6 -2.3391 -9.5821 -2.6642 18 7 -1.2266 -10.2241 -3.0515 19 1 -1.1986 -11.1292 -3.3994 20 7 -0.1124 -9.3952 -2.8783 21 6 -0.5139 -8.2355 -2.3853 22 6 0.1361 -7.0430 -2.0151 23 6 -0.3993 -3.5083 -1.5867 24 9 -1.4792 -3.4632 -2.3973 25 6 0.2289 -2.3531 -1.2237 26 1 -0.4849 0.8400 0.0004 27 1 2.6894 -3.6886 0.7371 28 1 1.5492 -5.7469 0.0873 29 1 -2.5576 -5.2434 -0.9826 30 1 -3.7517 -7.2568 -1.5973 31 1 -3.3427 -9.9802 -2.6874 32 1 1.2074 -6.9519 -2.1171 33 1 -0.1360 -1.4025 -1.5837 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240557002.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:41 Heat of formation + Delta-G solvation = 56.909986 kcal Electronic energy + Delta-G solvation = -20295.922309 eV Core-core repulsion = 17008.738421 eV Total energy + Delta-G solvation = -3287.183887 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -47.66836 -40.90275 -37.88195 -36.43075 -33.87882 -31.86093 -31.22766 -29.22202 -28.94530 -28.31476 -25.76478 -23.43099 -21.70877 -21.21876 -20.42295 -19.99194 -17.85878 -17.67561 -16.53483 -15.95694 -15.48526 -14.93208 -14.71514 -14.58163 -14.37758 -13.85238 -13.69263 -13.49473 -12.98031 -12.68725 -12.15494 -11.98527 -11.75883 -11.48515 -11.44812 -11.18996 -10.98199 -10.67358 -10.43540 -10.06835 -10.05120 -9.94791 -9.72666 -9.37615 -8.40497 -7.57428 -7.46873 -7.16718 -6.97246 -4.57979 0.87394 2.03149 2.60103 2.75052 2.86388 2.86798 2.97523 3.00802 3.07920 3.76931 4.20617 4.43866 4.56702 4.79532 5.30140 5.42206 5.46962 5.60298 5.68491 5.79578 5.98669 6.10237 6.18610 6.54944 6.63300 6.78816 6.79611 6.82940 6.94306 7.03253 7.19893 7.23221 7.25404 7.47422 7.61455 7.75035 7.81897 7.86153 8.07504 8.38664 8.62389 8.70111 9.92014 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.042937 B = 0.003750 C = 0.003552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.957257 B = 7465.296274 C = 7879.915480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.773 5.773 2 C 0.073 3.927 3 Si 0.915 3.085 4 H -0.265 1.265 5 H -0.275 1.275 6 H -0.259 1.259 7 C -0.443 4.443 8 H 0.087 0.913 9 C 0.136 3.864 10 C -0.235 4.235 11 C -0.039 4.039 12 C -0.242 4.242 13 C 0.057 3.943 14 C -0.124 4.124 15 C -0.063 4.063 16 C -0.208 4.208 17 C 0.068 3.932 18 N -0.438 5.438 19 H 0.438 0.562 20 N -0.322 5.322 21 C 0.119 3.881 22 C -0.135 4.135 23 C 0.137 3.863 24 F -0.161 7.161 25 C -0.210 4.210 26 H 0.287 0.713 27 H 0.101 0.899 28 H 0.101 0.899 29 H 0.122 0.878 30 H 0.118 0.882 31 H 0.181 0.819 32 H 0.125 0.875 33 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.763 -10.670 -2.711 11.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.148 4.148 3 Si 0.738 3.262 4 H -0.189 1.189 5 H -0.200 1.200 6 H -0.183 1.183 7 C -0.470 4.470 8 H 0.105 0.895 9 C 0.132 3.868 10 C -0.255 4.255 11 C -0.057 4.057 12 C -0.244 4.244 13 C 0.053 3.947 14 C -0.144 4.144 15 C -0.083 4.083 16 C -0.218 4.218 17 C -0.088 4.088 18 N -0.139 5.139 19 H 0.281 0.719 20 N -0.152 5.152 21 C -0.034 4.034 22 C -0.156 4.156 23 C 0.117 3.883 24 F -0.140 7.140 25 C -0.230 4.230 26 H 0.098 0.902 27 H 0.119 0.881 28 H 0.119 0.881 29 H 0.140 0.860 30 H 0.136 0.864 31 H 0.198 0.802 32 H 0.143 0.857 33 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -3.972 -11.208 -3.121 12.294 hybrid contribution -0.695 0.710 -0.011 0.994 sum -4.667 -10.498 -3.131 11.908 Atomic orbital electron populations 1.69831 1.07816 1.30063 1.31926 1.26070 0.94831 1.01917 0.91987 0.86194 0.80494 0.79851 0.79644 1.18948 1.20048 1.18295 1.19694 0.98521 0.91132 1.37690 0.89517 1.17449 0.89737 0.92412 0.87167 1.20710 1.04462 0.92614 1.07665 1.20218 0.93022 0.97187 0.95306 1.17982 1.03921 0.89456 1.13083 1.18558 0.92096 0.92217 0.91880 1.20821 0.94014 0.97817 1.01701 1.20045 0.98466 0.91496 0.98288 1.19655 0.94220 0.95555 1.12324 1.22539 0.92717 0.93342 1.00192 1.46249 1.04782 1.15178 1.47658 0.71911 1.77719 1.05274 1.02955 1.29210 1.20883 0.92654 0.93082 0.96758 1.20154 0.99387 0.90224 1.05863 1.17340 0.84867 0.94016 0.92051 1.91347 1.53661 1.97468 1.71526 1.20933 1.01645 0.96092 1.04360 0.90215 0.88099 0.88119 0.86036 0.86370 0.80165 0.85666 0.85280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.89 10.96 55.55 0.61 -18.29 16 2 C 0.07 1.71 5.12 -17.34 -0.09 1.62 16 3 Si 0.91 17.43 29.60 -169.99 -5.03 12.40 16 4 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 5 H -0.28 -5.15 7.11 56.52 0.40 -4.74 16 6 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 7 C -0.44 -10.95 9.02 -37.92 -0.34 -11.29 16 8 H 0.09 2.03 7.91 -52.48 -0.42 1.61 16 9 C 0.14 3.43 5.57 -106.81 -0.60 2.83 16 10 C -0.24 -5.43 9.73 -39.28 -0.38 -5.81 16 11 C -0.04 -0.84 9.38 -39.65 -0.37 -1.22 16 12 C -0.24 -5.42 5.46 -104.57 -0.57 -5.99 16 13 C 0.06 1.15 5.31 -104.97 -0.56 0.59 16 14 C -0.12 -2.26 8.67 -39.63 -0.34 -2.60 16 15 C -0.06 -0.96 10.06 -39.47 -0.40 -1.36 16 16 C -0.21 -3.21 6.32 -105.14 -0.66 -3.87 16 17 C 0.07 0.76 12.07 -16.59 -0.20 0.56 16 18 N -0.44 -5.05 7.19 30.84 0.22 -4.83 16 19 H 0.44 3.09 8.96 -182.71 -1.64 1.45 16 20 N -0.32 -5.34 12.71 33.22 0.42 -4.92 16 21 C 0.12 2.14 7.47 -83.10 -0.62 1.52 16 22 C -0.13 -2.60 9.52 -38.60 -0.37 -2.96 16 23 C 0.14 3.29 7.06 -39.48 -0.28 3.01 16 24 F -0.16 -3.75 15.77 2.25 0.04 -3.72 16 25 C -0.21 -5.36 8.60 -39.23 -0.34 -5.70 16 26 H 0.29 6.33 8.30 -40.82 -0.34 5.99 16 27 H 0.10 2.15 8.06 -52.49 -0.42 1.72 16 28 H 0.10 1.94 8.01 -52.48 -0.42 1.52 16 29 H 0.12 2.21 7.66 -52.49 -0.40 1.81 16 30 H 0.12 1.42 8.06 -52.48 -0.42 0.99 16 31 H 0.18 1.11 8.06 -52.49 -0.42 0.69 16 32 H 0.13 2.35 8.00 -52.49 -0.42 1.93 16 33 H 0.13 3.41 6.16 -52.49 -0.32 3.08 16 LS Contribution 296.09 15.07 4.46 4.46 Total: -1.00 -29.16 296.09 -9.42 -38.58 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -4.02 Total: 6.98 kcal Atomic # 6 Polarization: -24.56 SS G_CDS: -6.12 Total: -30.68 kcal Atomic # 7 Polarization: -29.29 SS G_CDS: 1.25 Total: -28.03 kcal Atomic # 9 Polarization: -3.75 SS G_CDS: 0.04 Total: -3.72 kcal Atomic # 14 Polarization: 17.43 SS G_CDS: -5.03 Total: 12.40 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -29.16 -9.42 -38.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240557002.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.491 kcal (2) G-P(sol) polarization free energy of solvation -29.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds