Wall clock time and date at job start Tue Mar 31 2020 05:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.36230 * 120.06081 * 2 1 4 4 C 1.39978 * 120.11630 * 180.24853 * 3 2 1 5 5 C 1.47878 * 119.88692 * 179.71241 * 4 3 2 6 6 C 1.39693 * 120.07867 * 0.02863 * 5 4 3 7 7 C 1.37835 * 120.00071 * 179.97438 * 6 5 4 8 8 C 1.38823 * 120.21185 * 359.97168 * 7 6 5 9 9 C 1.39553 * 120.05887 * 0.02562 * 8 7 6 10 10 C 1.38179 * 119.97271 * 359.75562 * 9 8 7 11 11 O 1.36522 * 108.59779 * 179.97438 * 9 8 7 12 12 C 1.43975 * 105.47176 * 342.67946 * 11 9 8 13 13 O 1.36456 * 131.36617 * 180.02562 * 8 7 6 14 14 C 1.40024 * 120.22667 * 359.74027 * 4 3 2 15 15 C 1.36200 * 120.11397 * 0.02562 * 14 4 3 16 16 C 1.40928 * 120.05493 * 179.75388 * 2 1 3 17 17 C 1.40999 * 120.11395 * 0.03042 * 16 2 1 18 18 H 1.07997 * 120.00038 * 26.47286 * 17 16 2 19 19 C 1.39971 * 119.99871 * 206.47643 * 17 16 2 20 20 N 1.30821 * 119.99912 * 16.22801 * 19 17 16 21 21 Si 1.86798 * 119.99887 * 196.22696 * 19 17 16 22 22 H 1.48503 * 109.47319 * 265.18678 * 21 19 17 23 23 H 1.48506 * 109.47050 * 25.18970 * 21 19 17 24 24 H 1.48505 * 109.46932 * 145.18907 * 21 19 17 25 25 H 1.08995 * 109.47383 * 270.24918 * 1 2 3 26 26 H 1.09011 * 109.46675 * 30.24401 * 1 2 3 27 27 H 1.08994 * 109.47146 * 150.23926 * 1 2 3 28 28 H 1.07997 * 119.94392 * 0.02562 * 3 2 1 29 29 H 1.07993 * 119.99850 * 359.96564 * 6 5 4 30 30 H 1.08001 * 119.89388 * 179.97438 * 7 6 5 31 31 H 1.07996 * 120.04386 * 180.25354 * 10 9 8 32 32 H 1.09002 * 110.56824 * 268.63539 * 12 11 9 33 33 H 1.09005 * 110.56425 * 145.77384 * 12 11 9 34 34 H 1.07993 * 119.94135 * 179.97438 * 14 4 3 35 35 H 1.08003 * 120.05577 * 179.97438 * 15 14 4 36 36 H 0.97004 * 119.99707 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1894 1.1791 0.0000 4 6 3.5892 1.1804 -0.0053 5 6 4.3248 2.4632 -0.0117 6 6 3.6244 3.6719 -0.0119 7 6 4.3117 4.8667 -0.0173 8 6 5.6999 4.8740 -0.0220 9 6 6.4053 3.6699 -0.0218 10 6 5.7214 2.4692 -0.0118 11 8 7.7418 3.9482 -0.0275 12 6 7.8462 5.3224 -0.4443 13 8 6.5963 5.9029 -0.0273 14 6 4.2953 -0.0288 -0.0050 15 6 3.6225 -1.2130 -0.0003 16 6 2.2128 -1.2198 0.0052 17 6 1.5115 -2.4429 0.0098 18 1 0.5168 -2.4966 -0.4073 19 6 2.1044 -3.5876 0.5552 20 7 3.1497 -3.4751 1.3336 21 14 1.4030 -5.2758 0.1714 22 1 0.4621 -5.6774 1.2478 23 1 0.6806 -5.2286 -1.1253 24 1 2.5086 -6.2636 0.0864 25 1 -0.3634 0.0045 1.0276 26 1 -0.3633 0.8879 -0.5177 27 1 -0.3633 -0.8921 -0.5101 28 1 1.6495 2.1144 0.0004 29 1 2.5445 3.6702 -0.0079 30 1 3.7685 5.8001 -0.0179 31 1 6.2662 1.5367 -0.0074 32 1 7.9564 5.3869 -1.5268 33 1 8.6814 5.8120 0.0566 34 1 5.3752 -0.0223 -0.0095 35 1 4.1681 -2.1451 -0.0005 36 1 3.5604 -4.2684 1.7119 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240901114.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:16 Heat of formation + Delta-G solvation = -26.515700 kcal Electronic energy + Delta-G solvation = -20678.575948 eV Core-core repulsion = 17478.942005 eV Total energy + Delta-G solvation = -3199.633943 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.104 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.79936 -38.51248 -36.93998 -36.00944 -33.92114 -32.09568 -30.54699 -30.09356 -28.51726 -26.44427 -25.58244 -24.71521 -22.60228 -22.50067 -20.66097 -19.47023 -17.82310 -17.42771 -17.06248 -16.94096 -15.98941 -15.45088 -14.63308 -14.25970 -14.06762 -13.67607 -13.43774 -13.21386 -13.00472 -12.83877 -12.72397 -12.53066 -12.24917 -11.90553 -11.57826 -11.27147 -11.21652 -11.19418 -10.95004 -10.75363 -10.57349 -10.25977 -9.66228 -9.45863 -9.32954 -8.56730 -8.01861 -7.53424 -7.05693 -6.89928 -4.47840 1.34868 1.64068 2.66249 2.95936 2.96738 2.98415 3.01561 3.15812 3.67764 3.76539 4.07073 4.58918 4.76750 4.85682 4.95709 5.41114 5.44982 5.50930 5.61772 5.62433 5.85932 6.11667 6.12331 6.28619 6.40700 6.48005 6.58311 6.61833 6.68185 6.75975 6.78370 6.88732 6.98094 7.12106 7.29509 7.47883 7.50940 7.77526 7.87293 7.98300 8.10942 8.43052 8.66116 8.78079 9.94271 Molecular weight = 282.10amu Principal moments of inertia in cm(-1) A = 0.032915 B = 0.003726 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.470532 B = 7513.825383 C = 8267.783742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.201 4.201 3 C -0.057 4.057 4 C -0.204 4.204 5 C 0.040 3.960 6 C -0.141 4.141 7 C -0.084 4.084 8 C -0.022 4.022 9 C 0.042 3.958 10 C -0.128 4.128 11 O -0.315 6.315 12 C 0.214 3.786 13 O -0.316 6.316 14 C -0.076 4.076 15 C -0.169 4.169 16 C 0.126 3.874 17 C -0.442 4.442 18 H 0.086 0.914 19 C 0.073 3.927 20 N -0.777 5.777 21 Si 0.910 3.090 22 H -0.268 1.268 23 H -0.258 1.258 24 H -0.273 1.273 25 H 0.046 0.954 26 H 0.038 0.962 27 H 0.058 0.942 28 H 0.095 0.905 29 H 0.134 0.866 30 H 0.126 0.874 31 H 0.132 0.868 32 H 0.076 0.924 33 H 0.123 0.877 34 H 0.093 0.907 35 H 0.118 0.882 36 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.059 8.555 -2.722 9.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.202 4.202 3 C -0.075 4.075 4 C -0.205 4.205 5 C 0.040 3.960 6 C -0.160 4.160 7 C -0.103 4.103 8 C -0.066 4.066 9 C -0.002 4.002 10 C -0.147 4.147 11 O -0.231 6.231 12 C 0.102 3.898 13 O -0.233 6.233 14 C -0.094 4.094 15 C -0.188 4.188 16 C 0.123 3.877 17 C -0.469 4.469 18 H 0.104 0.896 19 C -0.147 4.147 20 N -0.401 5.401 21 Si 0.734 3.266 22 H -0.193 1.193 23 H -0.182 1.182 24 H -0.198 1.198 25 H 0.065 0.935 26 H 0.057 0.943 27 H 0.077 0.923 28 H 0.113 0.887 29 H 0.152 0.848 30 H 0.143 0.857 31 H 0.150 0.850 32 H 0.094 0.906 33 H 0.141 0.859 34 H 0.111 0.889 35 H 0.136 0.864 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.394 8.495 -2.463 9.473 hybrid contribution 0.158 -0.647 -0.045 0.667 sum 3.552 7.848 -2.507 8.972 Atomic orbital electron populations 1.20409 0.93299 1.00262 1.00146 1.19445 0.94567 0.92990 1.13234 1.20249 0.92606 0.96210 0.98448 1.17902 0.92444 0.90027 1.20100 1.18701 0.90710 0.93558 0.93030 1.20960 1.00024 0.90401 1.04567 1.19867 0.88751 0.98991 1.02658 1.19686 0.91961 0.84802 1.10125 1.19669 0.81697 0.95011 1.03787 1.20110 0.93225 0.94684 1.06642 1.87318 1.21750 1.29104 1.84974 1.25449 0.87811 0.77099 0.99422 1.87257 1.18868 1.31770 1.85440 1.20537 0.97447 0.92444 0.98983 1.20960 0.94450 0.96619 1.06785 1.17605 0.91918 0.91746 0.86458 1.19757 1.02301 0.92649 1.32221 0.89557 1.26034 0.94144 1.01805 0.92749 1.69821 1.17542 1.32431 1.20274 0.86250 0.79602 0.80472 0.80267 1.19327 1.18177 1.19820 0.93510 0.94300 0.92337 0.88709 0.84782 0.85654 0.85024 0.90642 0.85943 0.88930 0.86401 0.90395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.62 9.61 36.01 0.35 -1.28 16 2 C -0.20 -4.54 5.90 -104.33 -0.62 -5.16 16 3 C -0.06 -1.21 8.99 -39.65 -0.36 -1.56 16 4 C -0.20 -4.37 5.90 -104.63 -0.62 -4.99 16 5 C 0.04 0.77 5.88 -104.88 -0.62 0.16 16 6 C -0.14 -2.38 9.42 -39.19 -0.37 -2.75 16 7 C -0.08 -1.32 10.04 -39.51 -0.40 -1.72 16 8 C -0.02 -0.38 7.16 -38.87 -0.28 -0.66 16 9 C 0.04 0.75 7.14 -39.11 -0.28 0.47 16 10 C -0.13 -2.37 9.44 -39.07 -0.37 -2.74 16 11 O -0.31 -5.06 11.40 -45.76 -0.52 -5.58 16 12 C 0.21 2.61 8.88 101.05 0.90 3.51 16 13 O -0.32 -4.83 11.40 -45.54 -0.52 -5.35 16 14 C -0.08 -1.71 9.36 -39.65 -0.37 -2.08 16 15 C -0.17 -4.15 8.61 -39.28 -0.34 -4.49 16 16 C 0.13 3.11 5.55 -106.80 -0.59 2.52 16 17 C -0.44 -10.73 8.43 -37.89 -0.32 -11.05 16 18 H 0.09 1.99 6.25 -52.49 -0.33 1.66 16 19 C 0.07 1.69 5.15 -17.33 -0.09 1.60 16 20 N -0.78 -18.79 11.00 55.55 0.61 -18.18 16 21 Si 0.91 17.29 29.59 -169.99 -5.03 12.26 16 22 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 23 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 24 H -0.27 -5.12 7.11 56.52 0.40 -4.71 16 25 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.04 0.65 8.08 -51.92 -0.42 0.23 16 27 H 0.06 1.11 6.25 -51.93 -0.32 0.79 16 28 H 0.09 1.74 6.17 -52.49 -0.32 1.42 16 29 H 0.13 2.03 6.17 -52.49 -0.32 1.70 16 30 H 0.13 1.62 8.06 -52.49 -0.42 1.20 16 31 H 0.13 2.37 6.17 -52.49 -0.32 2.04 16 32 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.12 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.09 1.90 6.17 -52.49 -0.32 1.57 16 35 H 0.12 2.97 6.25 -52.48 -0.33 2.65 16 36 H 0.28 6.25 8.30 -40.82 -0.34 5.91 16 LS Contribution 302.47 15.07 4.56 4.56 Total: -1.00 -26.96 302.47 -8.79 -35.75 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -3.52 Total: 6.76 kcal Atomic # 6 Polarization: -25.85 SS G_CDS: -4.37 Total: -30.21 kcal Atomic # 7 Polarization: -18.79 SS G_CDS: 0.61 Total: -18.18 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: -1.04 Total: -10.94 kcal Atomic # 14 Polarization: 17.29 SS G_CDS: -5.03 Total: 12.26 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -26.96 -8.79 -35.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240901114.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.234 kcal (2) G-P(sol) polarization free energy of solvation -26.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds